Wall clock time and date at job start Tue Mar 31 2020 23:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49696 * 2 1 4 4 C 1.53039 * 109.52672 * 120.08227 * 2 1 3 5 5 C 1.53037 * 109.54126 * 181.33561 * 4 2 1 6 6 C 1.53628 * 109.23713 * 298.50862 * 5 4 2 7 7 N 1.46927 * 108.54616 * 54.86012 * 6 5 4 8 8 C 1.34771 * 120.63556 * 126.36839 * 7 6 5 9 9 O 1.21348 * 120.00501 * 184.77849 * 8 7 6 10 10 C 1.49458 * 119.99917 * 4.77550 * 8 7 6 11 11 O 1.21351 * 119.99899 * 274.71908 * 10 8 7 12 12 N 1.34772 * 120.00011 * 94.71535 * 10 8 7 13 13 C 1.47147 * 120.98072 * 174.92088 * 12 10 8 14 14 C 1.53304 * 108.38042 * 129.49147 * 13 12 10 15 15 O 1.42961 * 109.22460 * 52.30539 * 14 13 12 16 16 C 1.42973 * 114.19754 * 297.43452 * 15 14 13 17 17 H 1.09003 * 109.48542 * 302.62328 * 16 15 14 18 18 C 1.53002 * 109.54856 * 182.46567 * 16 15 14 19 19 N 1.46494 * 109.46989 * 65.24159 * 18 16 15 20 20 C 1.36937 * 119.99826 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00134 * 0.02562 * 20 19 18 22 22 C 1.38810 * 119.99967 * 179.97438 * 20 19 18 23 23 N 1.31617 * 120.00222 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00194 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47241 * 59.99972 * 24 22 20 26 26 H 1.48497 * 109.47762 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47006 * 300.00226 * 24 22 20 28 28 C 1.47148 * 120.98219 * 354.95288 * 12 10 8 29 29 C 1.46926 * 118.73349 * 306.09433 * 7 6 5 30 30 H 1.08998 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47075 * 300.06654 * 1 2 3 32 32 H 1.09004 * 109.46806 * 60.06559 * 1 2 3 33 33 H 1.09004 * 109.45511 * 301.35235 * 4 2 1 34 34 H 1.08997 * 109.46092 * 61.30627 * 4 2 1 35 35 H 1.09004 * 109.50142 * 58.57859 * 5 4 2 36 36 H 1.08999 * 109.49700 * 178.65345 * 5 4 2 37 37 H 1.08997 * 109.74352 * 295.11759 * 6 5 4 38 38 H 1.08999 * 109.66287 * 174.54970 * 6 5 4 39 39 H 1.09002 * 109.68743 * 249.21347 * 13 12 10 40 40 H 1.09000 * 109.68559 * 9.73083 * 13 12 10 41 41 H 1.08999 * 109.50692 * 172.22609 * 14 13 12 42 42 H 1.08997 * 109.51205 * 292.37397 * 14 13 12 43 43 H 1.09001 * 109.46979 * 185.24362 * 18 16 15 44 44 H 1.09006 * 109.46597 * 305.23893 * 18 16 15 45 45 H 0.96993 * 120.00200 * 359.97438 * 19 18 16 46 46 H 0.96996 * 120.00362 * 179.97438 * 23 22 20 47 47 H 1.09008 * 109.68075 * 350.22811 * 28 12 10 48 48 H 1.08996 * 109.68572 * 110.74694 * 28 12 10 49 49 H 1.09002 * 109.58830 * 173.65005 * 29 7 6 50 50 H 1.09009 * 109.58881 * 294.06692 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 3.5715 -0.6941 1.2654 6 6 4.1057 -1.4306 0.0275 7 7 3.5047 -0.8281 -1.1703 8 6 4.2807 -0.3850 -2.1791 9 8 3.7791 0.1887 -3.1236 10 6 5.7590 -0.6000 -2.1348 11 8 6.4695 0.1889 -1.5470 12 7 6.3030 -1.6701 -2.7474 13 6 7.7626 -1.8446 -2.8127 14 6 8.1022 -3.2600 -2.3314 15 8 7.3165 -4.2062 -3.0602 16 6 5.9066 -4.0721 -2.8638 17 1 5.6773 -4.1613 -1.8019 18 6 5.1750 -5.1694 -3.6395 19 7 5.5164 -6.4772 -3.0747 20 6 4.9773 -7.6162 -3.6105 21 1 4.3007 -7.5504 -4.4497 22 6 5.3011 -8.8555 -3.0757 23 7 6.1269 -8.9359 -2.0539 24 14 4.5662 -10.4094 -3.8069 25 1 4.9619 -10.5201 -5.2340 26 1 5.0662 -11.5921 -3.0611 27 1 3.0857 -10.3513 -3.7069 28 6 5.4549 -2.6979 -3.3715 29 6 2.0413 -0.7234 -1.2498 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5148 0.8893 32 1 -0.3633 0.5128 -0.8906 33 1 1.6589 -0.2246 2.1388 34 1 1.6978 -1.7573 1.2351 35 1 3.9161 0.3399 1.2534 36 1 3.9345 -1.1883 2.1666 37 1 3.8350 -2.4851 0.0811 38 1 5.1902 -1.3315 -0.0187 39 1 8.1024 -1.7149 -3.8402 40 1 8.2493 -1.1111 -2.1699 41 1 9.1605 -3.4581 -2.5011 42 1 7.8811 -3.3456 -1.2675 43 1 4.0991 -5.0111 -3.5653 44 1 5.4758 -5.1360 -4.6868 45 1 6.1250 -6.5364 -2.3217 46 1 6.3529 -9.8019 -1.6799 47 1 4.4131 -2.5299 -3.0981 48 1 5.5617 -2.6537 -4.4553 49 1 1.7632 -0.1576 -2.1390 50 1 1.6056 -1.7214 -1.2983 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280647892.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:05 Heat of formation + Delta-G solvation = -120.122536 kcal Electronic energy + Delta-G solvation = -31283.295396 eV Core-core repulsion = 27117.009801 eV Total energy + Delta-G solvation = -4166.285595 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.37059 -40.76262 -39.57298 -38.73853 -36.62887 -36.01315 -35.00326 -33.92921 -32.91109 -31.97112 -29.96062 -28.21812 -27.31070 -27.10835 -25.26469 -24.75397 -23.39822 -23.09262 -22.21033 -21.09179 -20.01405 -19.22742 -19.09582 -18.31041 -17.95913 -17.50849 -16.78818 -16.52229 -16.35309 -16.22080 -16.03035 -15.75516 -15.64536 -15.42215 -15.08427 -14.99708 -14.63395 -14.45652 -14.39686 -14.16875 -14.04345 -13.60709 -13.52307 -13.09684 -13.04353 -12.89331 -12.76405 -12.67377 -12.66316 -12.31698 -12.10482 -12.09882 -11.89071 -11.85989 -11.70717 -11.61293 -11.36460 -11.26743 -10.92765 -10.84782 -9.95022 -9.89278 -8.97892 -7.91197 -5.20280 0.78081 0.79258 1.26476 1.50895 1.53702 1.59607 1.97843 2.58736 2.69054 2.82886 3.40581 3.43188 3.62689 3.71890 3.77978 3.82390 3.89133 3.92258 3.95419 4.09312 4.19143 4.24760 4.30367 4.32778 4.41022 4.44154 4.54500 4.61871 4.65287 4.69342 4.72265 4.78782 4.80812 4.88413 4.92468 5.00304 5.03305 5.08961 5.11509 5.19804 5.23786 5.33934 5.47365 5.52112 5.75179 5.87374 6.18018 6.29812 6.42333 6.51364 7.37089 8.10569 8.34743 9.32021 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.003267 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.838324 B = 8569.224913 C =10140.447080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.062 0.938 4 C -0.113 4.113 5 C -0.129 4.129 6 C 0.096 3.904 7 N -0.587 5.587 8 C 0.515 3.485 9 O -0.545 6.545 10 C 0.521 3.479 11 O -0.541 6.541 12 N -0.591 5.591 13 C 0.077 3.923 14 C 0.048 3.952 15 O -0.384 6.384 16 C 0.089 3.911 17 H 0.064 0.936 18 C 0.160 3.840 19 N -0.739 5.739 20 C -0.247 4.247 21 H 0.078 0.922 22 C -0.072 4.072 23 N -0.968 5.968 24 Si 0.973 3.027 25 H -0.280 1.280 26 H -0.296 1.296 27 H -0.275 1.275 28 C 0.089 3.911 29 C 0.107 3.893 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.130 0.870 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.028 0.972 45 H 0.376 0.624 46 H 0.251 0.749 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 19.146 6.619 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.081 0.919 4 C -0.151 4.151 5 C -0.167 4.167 6 C -0.026 4.026 7 N -0.320 5.320 8 C 0.298 3.702 9 O -0.422 6.422 10 C 0.304 3.696 11 O -0.418 6.418 12 N -0.325 5.325 13 C -0.045 4.045 14 C -0.029 4.029 15 O -0.302 6.302 16 C 0.030 3.970 17 H 0.082 0.918 18 C 0.033 3.967 19 N -0.382 5.382 20 C -0.379 4.379 21 H 0.096 0.904 22 C -0.265 4.265 23 N -0.618 5.618 24 Si 0.801 3.199 25 H -0.206 1.206 26 H -0.223 1.223 27 H -0.201 1.201 28 C -0.034 4.034 29 C -0.014 4.014 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.147 0.853 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.208 0.792 46 H 0.060 0.940 47 H 0.115 0.885 48 H 0.113 0.887 49 H 0.101 0.899 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.387 19.643 6.192 21.564 hybrid contribution 0.140 -0.649 -0.051 0.666 sum -6.247 18.994 6.141 20.917 Atomic orbital electron populations 1.21736 0.92674 1.02901 1.02592 1.21472 0.97250 0.99242 0.94175 0.91935 1.21622 0.94103 1.01687 0.97642 1.21958 0.96983 1.00760 0.96992 1.22168 0.97856 0.98560 0.83977 1.48270 1.07893 1.58024 1.17781 1.20206 0.87197 0.79496 0.83322 1.90782 1.73790 1.42573 1.35093 1.20290 0.88984 0.81555 0.78737 1.90775 1.62092 1.45207 1.43709 1.48210 1.08696 1.21197 1.54406 1.22616 0.78272 0.99094 1.04470 1.23140 0.97633 0.86418 0.95754 1.88131 1.16740 1.55790 1.69571 1.22506 0.82076 0.93027 0.99425 0.91847 1.20765 0.96473 0.83710 0.95713 1.42376 1.55808 1.01062 1.38924 1.19599 1.20926 0.85921 1.11408 0.90409 1.25539 1.01005 1.00647 0.99292 1.69813 1.40211 1.24143 1.27640 0.85232 0.78145 0.78974 0.77512 1.20632 1.22277 1.20114 1.22452 0.94860 0.86387 0.99710 1.22046 0.76737 1.02559 1.00036 0.91535 0.91231 0.92472 0.89970 0.90514 0.92251 0.88470 0.88839 0.91011 0.88775 0.87234 0.85263 0.92463 0.93161 0.95371 0.79225 0.94042 0.88539 0.88658 0.89913 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.20 71.98 0.66 -0.80 16 2 C -0.10 -1.39 2.87 -10.72 -0.03 -1.42 16 3 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.11 -1.30 5.17 30.62 0.16 -1.14 16 5 C -0.13 -1.78 6.10 30.82 0.19 -1.59 16 6 C 0.10 1.70 6.35 86.51 0.55 2.25 16 7 N -0.59 -12.48 2.97 -819.63 -2.43 -14.91 16 8 C 0.52 14.19 5.56 87.27 0.48 14.68 16 9 O -0.54 -17.92 16.51 -3.24 -0.05 -17.97 16 10 C 0.52 14.61 5.61 87.27 0.49 15.10 16 11 O -0.54 -17.32 16.37 -3.25 -0.05 -17.37 16 12 N -0.59 -14.82 3.02 -818.90 -2.47 -17.29 16 13 C 0.08 1.67 6.65 86.36 0.57 2.24 16 14 C 0.05 1.11 6.99 72.08 0.50 1.61 16 15 O -0.38 -12.37 10.34 -148.98 -1.54 -13.91 16 16 C 0.09 2.69 2.81 30.70 0.09 2.77 16 17 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 18 C 0.16 6.01 5.93 86.38 0.51 6.53 16 19 N -0.74 -36.62 5.55 -343.45 -1.91 -38.53 16 20 C -0.25 -13.48 9.99 84.03 0.84 -12.64 16 21 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 22 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 23 N -0.97 -58.34 13.06 21.65 0.28 -58.06 16 24 Si 0.97 45.18 29.55 68.60 2.03 47.21 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 27 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 28 C 0.09 2.23 5.80 86.36 0.50 2.73 16 29 C 0.11 1.88 5.72 86.36 0.49 2.37 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.46 6.23 -2.39 -0.01 1.45 16 39 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.11 2.28 7.06 -2.39 -0.02 2.26 16 41 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.38 20.09 7.67 -92.71 -0.71 19.38 16 46 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 47 H 0.10 2.28 6.48 -2.38 -0.02 2.26 16 48 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.08 1.70 7.00 -2.39 -0.02 1.68 16 50 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -72.25 397.93 0.55 -71.69 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.22 Total: 30.06 kcal Atomic # 6 Polarization: 22.60 SS G_CDS: 6.48 Total: 29.08 kcal Atomic # 7 Polarization: -122.26 SS G_CDS: -6.53 Total: -128.79 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -1.65 Total: -49.25 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -72.25 0.55 -71.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280647892.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.431 kcal (2) G-P(sol) polarization free energy of solvation -72.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds