Wall clock time and date at job start Tue Mar 31 2020 23:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.52289 * 2 1 4 4 C 1.53044 * 109.49636 * 120.07386 * 2 1 3 5 5 C 1.53031 * 109.54057 * 181.31759 * 4 2 1 6 6 C 1.53191 * 109.31543 * 298.63715 * 5 4 2 7 7 N 1.46928 * 108.77374 * 54.63322 * 6 5 4 8 8 C 1.34781 * 120.63293 * 126.36861 * 7 6 5 9 9 O 1.21346 * 120.00142 * 185.06024 * 8 7 6 10 10 C 1.49456 * 119.99584 * 5.05979 * 8 7 6 11 11 O 1.21345 * 120.00098 * 274.70225 * 10 8 7 12 12 N 1.34778 * 119.99856 * 94.70610 * 10 8 7 13 13 C 1.47149 * 120.98318 * 354.94482 * 12 10 8 14 14 C 1.53297 * 108.38278 * 230.51203 * 13 12 10 15 15 O 1.42955 * 109.22608 * 307.69779 * 14 13 12 16 16 C 1.42963 * 114.16532 * 62.57704 * 15 14 13 17 17 H 1.08994 * 109.51064 * 57.34696 * 16 15 14 18 18 C 1.53003 * 109.51025 * 177.49742 * 16 15 14 19 19 N 1.46496 * 109.47229 * 300.00323 * 18 16 15 20 20 C 1.36941 * 120.00145 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99639 * 359.97438 * 20 19 18 22 22 C 1.38808 * 119.99942 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00093 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99738 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47232 * 89.99814 * 24 22 20 26 26 H 1.48498 * 109.46865 * 209.99875 * 24 22 20 27 27 H 1.48504 * 109.46784 * 329.99388 * 24 22 20 28 28 C 1.47149 * 120.98106 * 174.91979 * 12 10 8 29 29 C 1.46929 * 118.74179 * 306.64542 * 7 6 5 30 30 H 1.08996 * 109.47523 * 299.92263 * 1 2 3 31 31 H 1.09003 * 109.46869 * 59.92272 * 1 2 3 32 32 H 1.09002 * 109.46924 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.45551 * 61.29654 * 4 2 1 34 34 H 1.09004 * 109.46173 * 301.34390 * 4 2 1 35 35 H 1.09001 * 109.50066 * 178.68752 * 5 4 2 36 36 H 1.09007 * 109.49789 * 58.59039 * 5 4 2 37 37 H 1.08995 * 109.58606 * 294.85174 * 6 5 4 38 38 H 1.09000 * 109.59202 * 174.42011 * 6 5 4 39 39 H 1.09000 * 109.68359 * 110.78973 * 13 12 10 40 40 H 1.09002 * 109.68112 * 350.23110 * 13 12 10 41 41 H 1.08999 * 109.51024 * 67.62197 * 14 13 12 42 42 H 1.09001 * 109.51112 * 187.77145 * 14 13 12 43 43 H 1.08996 * 109.46991 * 60.00387 * 18 16 15 44 44 H 1.08999 * 109.46928 * 180.02562 * 18 16 15 45 45 H 0.97005 * 120.00244 * 0.02562 * 19 18 16 46 46 H 0.97001 * 119.99708 * 180.02562 * 23 22 20 47 47 H 1.09002 * 109.68102 * 9.76481 * 28 12 10 48 48 H 1.09001 * 109.71433 * 249.22985 * 28 12 10 49 49 H 1.08990 * 109.58874 * 173.14405 * 29 7 6 50 50 H 1.09005 * 109.58109 * 293.57136 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7230 1.2485 5 6 3.5707 -0.6949 1.2662 6 6 4.1053 -1.4267 0.0311 7 7 3.5047 -0.8292 -1.1693 8 6 4.2813 -0.3857 -2.1777 9 8 3.7802 0.1884 -3.1221 10 6 5.7596 -0.6009 -2.1326 11 8 6.4699 0.1877 -1.5444 12 7 6.3037 -1.6709 -2.7453 13 6 5.4558 -2.6986 -3.3699 14 6 5.9074 -4.0725 -2.8615 15 8 7.3170 -4.2071 -3.0580 16 6 8.1025 -3.2611 -2.3287 17 1 7.8808 -3.3470 -1.2650 18 6 9.5882 -3.5394 -2.5663 19 7 9.9100 -4.8944 -2.1118 20 6 11.1898 -5.3685 -2.2243 21 1 11.9617 -4.7436 -2.6484 22 6 11.4945 -6.6526 -1.7941 23 7 10.5536 -7.4143 -1.2777 24 14 13.2405 -7.2990 -1.9469 25 1 13.9989 -6.9729 -0.7126 26 1 13.2084 -8.7718 -2.1337 27 1 13.9021 -6.6660 -3.1162 28 6 7.7634 -1.8457 -2.8098 29 6 2.0416 -0.7187 -1.2471 30 1 -0.3634 0.5126 0.8906 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6966 -1.7571 1.2355 34 1 1.6580 -0.2243 2.1390 35 1 3.9333 -1.1896 2.1673 36 1 3.9158 0.3390 1.2543 37 1 3.8375 -2.4817 0.0871 38 1 5.1896 -1.3246 -0.0134 39 1 5.5637 -2.6546 -4.4537 40 1 4.4140 -2.5305 -3.0970 41 1 5.6777 -4.1613 -1.7997 42 1 5.3865 -4.8544 -3.4141 43 1 9.8088 -3.4510 -3.6300 44 1 10.1864 -2.8181 -2.0096 45 1 9.2165 -5.4558 -1.7312 46 1 10.7667 -8.3115 -0.9767 47 1 8.2497 -1.1128 -2.1661 48 1 8.1042 -1.7156 -3.8370 49 1 1.7648 -0.1497 -2.1345 50 1 1.6022 -1.7150 -1.2974 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280647893.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:10 Heat of formation + Delta-G solvation = -96.086190 kcal Electronic energy + Delta-G solvation = -30885.838445 eV Core-core repulsion = 26720.595144 eV Total energy + Delta-G solvation = -4165.243301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.36991 -39.79784 -38.49627 -37.81576 -35.20734 -34.48938 -34.33363 -32.34079 -32.29072 -30.27912 -28.68006 -27.61255 -26.65729 -25.64573 -23.68224 -23.51441 -22.79367 -21.98501 -20.89787 -20.42018 -19.09813 -18.15502 -17.34570 -17.09198 -16.88538 -16.31370 -15.76483 -15.42118 -15.29032 -15.08514 -15.01398 -14.77980 -14.54966 -14.42256 -14.03114 -13.94496 -13.50258 -13.34409 -13.17801 -13.08813 -12.80703 -12.57872 -12.52167 -12.30003 -12.25144 -11.73640 -11.66358 -11.54853 -11.32962 -11.16204 -11.08495 -10.93143 -10.85947 -10.80109 -10.51389 -10.11526 -9.99266 -9.80202 -9.68367 -9.19005 -8.88039 -8.75973 -6.90935 -5.74385 -3.03102 1.77636 1.83776 2.27091 2.91983 3.45209 3.50256 3.52050 3.77534 3.84466 4.20641 4.32426 4.34844 4.51038 4.51996 4.64295 4.73061 4.75840 4.89144 4.95584 4.99242 5.01905 5.10595 5.20064 5.20402 5.27185 5.31289 5.32709 5.33025 5.52212 5.54262 5.58372 5.60884 5.62973 5.66844 5.70579 5.76059 5.85940 5.90098 5.97666 6.05992 6.23733 6.51271 6.64986 6.70533 6.85757 7.36655 7.43666 7.54119 7.71008 8.43800 9.55755 10.12182 10.48178 11.48398 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.002394 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.402764 B =11691.295632 C =12150.668993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.076 0.924 4 C -0.115 4.115 5 C -0.135 4.135 6 C 0.102 3.898 7 N -0.597 5.597 8 C 0.521 3.479 9 O -0.512 6.512 10 C 0.517 3.483 11 O -0.512 6.512 12 N -0.594 5.594 13 C 0.071 3.929 14 C 0.049 3.951 15 O -0.353 6.353 16 C 0.075 3.925 17 H 0.065 0.935 18 C 0.163 3.837 19 N -0.725 5.725 20 C -0.239 4.239 21 H 0.071 0.929 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.082 3.918 29 C 0.114 3.886 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.108 0.892 43 H 0.030 0.970 44 H 0.037 0.963 45 H 0.388 0.612 46 H 0.255 0.745 47 H 0.106 0.894 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.547 13.142 2.949 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.094 0.906 4 C -0.153 4.153 5 C -0.173 4.173 6 C -0.021 4.021 7 N -0.332 5.332 8 C 0.303 3.697 9 O -0.387 6.387 10 C 0.299 3.701 11 O -0.387 6.387 12 N -0.330 5.330 13 C -0.052 4.052 14 C -0.029 4.029 15 O -0.271 6.271 16 C 0.016 3.984 17 H 0.083 0.917 18 C 0.035 3.965 19 N -0.370 5.370 20 C -0.370 4.370 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.040 4.040 29 C -0.008 4.008 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.126 0.874 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.222 0.778 46 H 0.064 0.936 47 H 0.124 0.876 48 H 0.103 0.897 49 H 0.113 0.887 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.163 13.729 2.576 26.197 hybrid contribution 0.529 -0.376 0.217 0.685 sum -21.633 13.353 2.793 25.575 Atomic orbital electron populations 1.21759 0.93993 1.02228 1.02267 1.21449 0.96232 1.00366 0.94749 0.90589 1.21612 0.95013 1.01027 0.97639 1.21907 0.96149 1.01796 0.97458 1.21903 0.98740 0.97547 0.83901 1.48169 1.07111 1.59753 1.18203 1.20285 0.87284 0.79176 0.82935 1.90798 1.73445 1.40598 1.33830 1.20164 0.88655 0.81861 0.79375 1.90821 1.61387 1.44168 1.42307 1.48174 1.08204 1.21595 1.54986 1.22613 0.94388 0.88743 0.99477 1.22902 0.84069 0.95085 1.00829 1.88196 1.14956 1.54954 1.68974 1.22815 0.93954 0.86171 0.95471 0.91687 1.20629 0.87920 0.89836 0.98120 1.42198 1.09301 1.10863 1.74641 1.19223 0.86545 0.97093 1.34178 0.91122 1.24740 0.97657 0.96825 1.01736 1.69672 1.31593 1.09372 1.47410 0.86177 0.84264 0.78008 0.77661 1.21745 1.21791 1.20744 1.22528 0.78277 0.99250 1.03913 1.21724 0.78034 1.01433 0.99609 0.92133 0.92279 0.92294 0.91407 0.91277 0.89962 0.91071 0.90247 0.89588 0.89514 0.89677 0.92700 0.87373 0.95236 0.94549 0.77823 0.93560 0.87610 0.89652 0.88660 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 9.20 37.16 0.34 -0.34 16 2 C -0.11 -0.68 2.86 -90.72 -0.26 -0.94 16 3 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.12 -0.64 5.17 -26.69 -0.14 -0.78 16 5 C -0.13 -0.92 6.08 -26.62 -0.16 -1.09 16 6 C 0.10 0.83 6.33 -3.71 -0.02 0.81 16 7 N -0.60 -5.74 2.98 -173.54 -0.52 -6.26 16 8 C 0.52 6.72 5.56 -11.58 -0.06 6.65 16 9 O -0.51 -7.87 16.51 5.50 0.09 -7.78 16 10 C 0.52 7.30 5.62 -11.58 -0.07 7.23 16 11 O -0.51 -8.57 16.36 5.50 0.09 -8.48 16 12 N -0.59 -7.70 3.02 -172.78 -0.52 -8.23 16 13 C 0.07 0.76 6.52 -3.53 -0.02 0.74 16 14 C 0.05 0.58 6.98 37.31 0.26 0.84 16 15 O -0.35 -5.86 10.13 -35.23 -0.36 -6.22 16 16 C 0.07 1.21 2.87 -26.58 -0.08 1.13 16 17 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 18 C 0.16 3.24 5.96 -4.04 -0.02 3.21 16 19 N -0.73 -18.48 5.49 -59.91 -0.33 -18.81 16 20 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 24 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 C 0.08 1.14 5.94 -3.54 -0.02 1.12 16 29 C 0.11 0.86 5.70 -3.93 -0.02 0.84 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.86 6.23 -51.93 -0.32 0.54 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.79 6.48 -51.93 -0.34 0.45 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.39 10.48 7.54 -40.82 -0.31 10.17 16 46 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.11 1.49 7.06 -51.93 -0.37 1.12 16 48 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.10 0.84 7.00 -51.93 -0.36 0.47 16 50 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -34.66 397.55 -8.81 -43.46 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -8.43 Total: 4.37 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -0.52 Total: 12.07 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.64 Total: -60.83 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.18 Total: -22.48 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.66 -8.81 -43.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280647893.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.624 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds