Wall clock time and date at job start Tue Mar 31 2020 23:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.89326 * 2 1 4 4 C 1.55129 * 110.94177 * 124.07687 * 2 1 3 5 5 N 1.47422 * 104.72518 * 155.28614 * 4 2 1 6 6 C 1.34776 * 125.65215 * 155.81315 * 5 4 2 7 7 O 1.21284 * 119.99614 * 359.72389 * 6 5 4 8 8 C 1.50698 * 120.00439 * 179.71612 * 6 5 4 9 9 C 1.52998 * 109.47236 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47176 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00006 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00226 * 180.02562 * 10 9 8 13 13 C 1.47150 * 120.98211 * 180.02562 * 12 10 9 14 14 C 1.53296 * 108.38576 * 129.44077 * 13 12 10 15 15 O 1.42963 * 109.22207 * 52.30122 * 14 13 12 16 16 C 1.42959 * 114.16598 * 297.41596 * 15 14 13 17 17 C 1.47144 * 120.98031 * 359.97105 * 12 10 9 18 18 C 1.47026 * 108.70372 * 335.55553 * 5 4 2 19 19 C 1.54329 * 107.26869 * 1.28557 * 18 5 4 20 20 H 1.08997 * 110.71806 * 140.73712 * 19 18 5 21 21 N 1.46499 * 110.71843 * 263.82642 * 19 18 5 22 22 C 1.36934 * 120.00389 * 273.54771 * 21 19 18 23 23 H 1.07997 * 119.99636 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99810 * 179.97438 * 22 21 19 25 25 N 1.31623 * 119.99559 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00406 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.47240 * 89.99362 * 26 24 22 28 28 H 1.48503 * 109.46837 * 209.99696 * 26 24 22 29 29 H 1.48498 * 109.46506 * 329.99519 * 26 24 22 30 30 H 1.08994 * 109.47258 * 183.88430 * 1 2 3 31 31 H 1.09006 * 109.46972 * 303.87683 * 1 2 3 32 32 H 1.08994 * 109.47163 * 63.87643 * 1 2 3 33 33 H 1.09005 * 110.49773 * 36.44817 * 4 2 1 34 34 H 1.09004 * 110.34505 * 274.05196 * 4 2 1 35 35 H 1.09001 * 109.46755 * 60.00376 * 8 6 5 36 36 H 1.09002 * 109.47412 * 300.01069 * 8 6 5 37 37 H 1.08992 * 109.47124 * 60.00181 * 9 8 6 38 38 H 1.08998 * 109.47126 * 299.99879 * 9 8 6 39 39 H 1.08993 * 109.68655 * 9.71252 * 13 12 10 40 40 H 1.09005 * 109.67857 * 249.16387 * 13 12 10 41 41 H 1.09003 * 109.50953 * 172.22359 * 14 13 12 42 42 H 1.08997 * 109.51109 * 292.32304 * 14 13 12 43 43 H 1.08998 * 109.51441 * 182.50893 * 16 15 14 44 44 H 1.08999 * 109.51491 * 302.66443 * 16 15 14 45 45 H 1.09001 * 109.68529 * 110.83375 * 17 12 10 46 46 H 1.09004 * 109.68383 * 350.28201 * 17 12 10 47 47 H 1.09004 * 109.88124 * 120.69949 * 18 5 4 48 48 H 1.08999 * 109.88171 * 241.71455 * 18 5 4 49 49 H 0.97003 * 119.99417 * 93.54970 * 21 19 18 50 50 H 0.96999 * 119.99768 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0844 -0.8118 1.2000 5 7 3.4280 -1.2422 0.7725 6 6 4.4491 -1.5603 1.5927 7 8 4.3027 -1.4989 2.7951 8 6 5.7726 -1.9923 1.0159 9 6 6.7507 -2.2935 2.1532 10 6 8.0744 -2.7249 1.5763 11 8 8.2209 -2.7860 0.3739 12 7 9.0951 -3.0438 2.3966 13 6 10.3969 -3.4672 1.8566 14 6 11.4934 -2.6321 2.5276 15 8 11.3400 -2.7072 3.9470 16 6 10.1084 -2.1670 4.4320 17 6 8.9411 -2.9778 3.8584 18 6 3.4678 -1.2731 -0.6969 19 6 2.0861 -0.8075 -1.2026 20 1 2.1913 -0.1719 -2.0818 21 7 1.2273 -1.9574 -1.4964 22 6 1.2818 -2.5561 -2.7267 23 1 1.9577 -2.1803 -3.4806 24 6 0.4684 -3.6459 -3.0049 25 7 0.5205 -4.2211 -4.1877 26 14 -0.7012 -4.2955 -1.7012 27 1 -2.0096 -3.6035 -1.8209 28 1 -0.8939 -5.7555 -1.8923 29 1 -0.1295 -4.0438 -0.3539 30 1 -0.3633 -1.0252 0.0696 31 1 -0.3633 0.5729 0.8533 32 1 -0.3633 0.4525 -0.9226 33 1 1.4538 -1.6784 1.3986 34 1 2.1524 -0.1801 2.0858 35 1 6.1748 -1.1942 0.3920 36 1 5.6306 -2.8887 0.4122 37 1 6.3482 -3.0917 2.7767 38 1 6.8927 -1.3972 2.7570 39 1 10.4183 -3.3036 0.7793 40 1 10.5571 -4.5239 2.0711 41 1 12.4716 -3.0220 2.2460 42 1 11.4087 -1.5942 2.2059 43 1 10.0902 -2.2222 5.5204 44 1 10.0181 -1.1272 4.1178 45 1 8.9545 -3.9850 4.2749 46 1 7.9985 -2.4899 4.1067 47 1 4.2425 -0.5982 -1.0610 48 1 3.6685 -2.2877 -1.0411 49 1 0.6199 -2.2946 -0.8194 50 1 -0.0482 -4.9824 -4.3822 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281462745.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:54 Heat of formation + Delta-G solvation = -93.262933 kcal Electronic energy + Delta-G solvation = -30094.042981 eV Core-core repulsion = 25928.922106 eV Total energy + Delta-G solvation = -4165.120875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.73473 -39.90904 -38.68242 -37.76931 -35.12469 -34.07937 -33.23213 -32.42883 -31.68957 -30.84755 -28.55967 -28.15245 -26.94214 -25.12583 -24.21936 -23.59623 -22.38305 -21.80692 -19.50929 -19.48060 -18.86150 -18.00047 -17.70132 -16.92495 -16.57107 -16.45185 -16.02916 -15.93167 -15.52498 -15.35479 -15.18707 -14.59677 -14.35290 -14.19636 -13.95912 -13.67922 -13.30709 -13.12242 -12.98838 -12.76235 -12.54909 -12.44357 -12.19952 -12.15535 -11.92514 -11.86568 -11.74693 -11.49138 -11.30115 -11.19424 -11.07108 -10.86612 -10.64567 -10.58909 -10.34564 -10.04767 -10.02615 -9.73753 -9.62792 -9.05859 -8.97453 -8.37292 -7.39628 -5.85389 -3.22533 2.34648 2.44961 2.78221 3.22071 3.31396 3.33310 3.33756 3.40283 4.14173 4.25574 4.48795 4.51226 4.56614 4.64399 4.71066 4.72472 4.79013 4.91569 5.00318 5.04690 5.07280 5.12134 5.13889 5.25592 5.28180 5.32529 5.43832 5.47367 5.51858 5.62049 5.69427 5.76624 5.78249 5.83672 5.99933 6.01410 6.04400 6.14002 6.23913 6.38372 6.48815 6.58981 6.61973 6.65732 6.94836 7.75746 7.85016 7.89530 8.30396 8.33459 9.10424 9.82771 10.01178 11.32385 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016287 B = 0.002368 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.743729 B =11822.993814 C =12683.729330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.085 0.915 4 C 0.113 3.887 5 N -0.607 5.607 6 C 0.528 3.472 7 O -0.561 6.561 8 C -0.121 4.121 9 C -0.121 4.121 10 C 0.518 3.482 11 O -0.533 6.533 12 N -0.621 5.621 13 C 0.076 3.924 14 C 0.048 3.952 15 O -0.380 6.380 16 C 0.047 3.953 17 C 0.070 3.930 18 C 0.069 3.931 19 C 0.178 3.822 20 H 0.080 0.920 21 N -0.737 5.737 22 C -0.250 4.250 23 H 0.093 0.907 24 C 0.010 3.990 25 N -0.929 5.929 26 Si 0.879 3.121 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.278 1.278 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.056 0.944 43 H 0.108 0.892 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.061 0.939 48 H 0.082 0.918 49 H 0.363 0.637 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.267 7.218 16.967 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 H 0.103 0.897 4 C -0.009 4.009 5 N -0.340 5.340 6 C 0.317 3.683 7 O -0.441 6.441 8 C -0.161 4.161 9 C -0.161 4.161 10 C 0.307 3.693 11 O -0.409 6.409 12 N -0.357 5.357 13 C -0.047 4.047 14 C -0.029 4.029 15 O -0.299 6.299 16 C -0.031 4.031 17 C -0.054 4.054 18 C -0.056 4.056 19 C 0.066 3.934 20 H 0.098 0.902 21 N -0.380 5.380 22 C -0.379 4.379 23 H 0.111 0.889 24 C -0.186 4.186 25 N -0.576 5.576 26 Si 0.710 3.290 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.204 1.204 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.075 0.925 43 H 0.126 0.874 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.079 0.921 48 H 0.100 0.900 49 H 0.198 0.802 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.490 7.028 16.825 25.266 hybrid contribution -1.019 -0.677 0.659 1.390 sum 16.472 6.350 17.484 24.846 Atomic orbital electron populations 1.21565 0.93676 1.02209 1.01614 1.22690 0.96727 0.98899 0.95306 0.89700 1.22303 0.83044 0.98176 0.97423 1.48470 1.11777 1.65643 1.08074 1.20206 0.85069 0.76982 0.86077 1.90652 1.83753 1.55043 1.14663 1.21331 0.91680 1.04686 0.98412 1.21388 0.91370 1.04123 0.99251 1.20836 0.85545 0.76266 0.86641 1.90732 1.82883 1.52640 1.14627 1.48146 1.12526 1.68353 1.06672 1.22291 0.82306 0.99205 1.00907 1.23004 0.99106 0.99781 0.81053 1.87973 1.37691 1.82666 1.21537 1.22994 0.83629 0.96541 0.99933 1.22503 1.00597 1.02272 0.79988 1.23278 1.01311 1.02836 0.78197 1.21176 0.87974 0.89181 0.95042 0.90236 1.42814 1.46360 1.34404 1.14389 1.19050 1.19846 1.09673 0.89352 0.88918 1.24657 0.99507 0.98157 0.96319 1.69693 1.42479 1.24798 1.20617 0.86640 0.81904 0.78647 0.81859 1.20872 1.21647 1.20397 0.92312 0.93208 0.91572 0.91677 0.91034 0.88237 0.87902 0.88005 0.88168 0.87879 0.90609 0.87511 0.92523 0.87385 0.92433 0.90181 0.88089 0.92080 0.90001 0.80212 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.85 37.16 0.33 -1.53 16 2 C -0.12 -1.65 3.53 -88.35 -0.31 -1.97 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 4 C 0.11 1.72 6.36 -2.41 -0.02 1.71 16 5 N -0.61 -9.59 3.32 -170.37 -0.57 -10.16 16 6 C 0.53 8.17 7.85 -10.99 -0.09 8.09 16 7 O -0.56 -9.80 16.24 5.55 0.09 -9.71 16 8 C -0.12 -1.57 4.18 -27.88 -0.12 -1.69 16 9 C -0.12 -1.31 3.36 -27.88 -0.09 -1.40 16 10 C 0.52 6.09 7.71 -10.99 -0.08 6.00 16 11 O -0.53 -8.14 15.45 5.55 0.09 -8.06 16 12 N -0.62 -5.79 3.02 -172.30 -0.52 -6.31 16 13 C 0.08 0.63 6.64 -3.53 -0.02 0.60 16 14 C 0.05 0.33 6.98 37.31 0.26 0.59 16 15 O -0.38 -3.08 10.74 -35.23 -0.38 -3.46 16 16 C 0.05 0.28 6.98 37.29 0.26 0.54 16 17 C 0.07 0.46 6.54 -3.56 -0.02 0.44 16 18 C 0.07 1.12 6.22 -3.06 -0.02 1.10 16 19 C 0.18 3.07 3.37 -66.09 -0.22 2.84 16 20 H 0.08 1.36 8.12 -51.93 -0.42 0.94 16 21 N -0.74 -16.01 4.42 -51.65 -0.23 -16.23 16 22 C -0.25 -6.60 10.46 -15.06 -0.16 -6.75 16 23 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 24 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 25 N -0.93 -28.34 13.97 55.49 0.78 -27.56 16 26 Si 0.88 21.51 27.74 -169.99 -4.71 16.79 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.28 -6.46 6.52 56.52 0.37 -6.10 16 30 H 0.06 0.93 6.38 -51.93 -0.33 0.60 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.08 7.99 -51.93 -0.41 0.66 16 34 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 35 H 0.10 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.10 1.43 8.10 -51.93 -0.42 1.01 16 37 H 0.10 1.06 7.97 -51.93 -0.41 0.65 16 38 H 0.10 0.96 7.62 -51.93 -0.40 0.56 16 39 H 0.10 0.96 7.08 -51.93 -0.37 0.60 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.10 0.57 6.05 -51.93 -0.31 0.25 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 1.51 8.05 -51.93 -0.42 1.10 16 49 H 0.36 7.94 3.96 -40.82 -0.16 7.78 16 50 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 395.40 15.07 5.96 5.96 Total: -1.00 -34.14 395.40 -8.21 -42.36 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -8.32 Total: 7.61 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -0.40 Total: 8.77 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.54 Total: -60.26 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.20 Total: -21.23 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.14 -8.21 -42.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281462745.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.904 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds