Wall clock time and date at job start Tue Mar 31 2020 23:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.89326 * 2 1 4 4 C 1.55129 * 110.94177 * 124.07687 * 2 1 3 5 5 N 1.47422 * 104.72518 * 155.28614 * 4 2 1 6 6 C 1.34776 * 125.65215 * 155.81315 * 5 4 2 7 7 O 1.21284 * 119.99614 * 359.72389 * 6 5 4 8 8 C 1.50698 * 120.00439 * 179.71612 * 6 5 4 9 9 C 1.52998 * 109.47236 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47176 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00006 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00226 * 180.02562 * 10 9 8 13 13 C 1.47150 * 120.98211 * 180.02562 * 12 10 9 14 14 C 1.53296 * 108.38576 * 129.44077 * 13 12 10 15 15 O 1.42963 * 109.22207 * 52.30122 * 14 13 12 16 16 C 1.42959 * 114.16598 * 297.41596 * 15 14 13 17 17 C 1.47144 * 120.98031 * 359.97105 * 12 10 9 18 18 C 1.47026 * 108.70372 * 335.55553 * 5 4 2 19 19 C 1.54329 * 107.26869 * 1.28557 * 18 5 4 20 20 H 1.08997 * 110.71806 * 140.73712 * 19 18 5 21 21 N 1.46499 * 110.71843 * 263.82642 * 19 18 5 22 22 C 1.36934 * 120.00389 * 273.54771 * 21 19 18 23 23 H 1.07997 * 119.99636 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99810 * 179.97438 * 22 21 19 25 25 N 1.31623 * 119.99559 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00406 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.47240 * 89.99362 * 26 24 22 28 28 H 1.48503 * 109.46837 * 209.99696 * 26 24 22 29 29 H 1.48498 * 109.46506 * 329.99519 * 26 24 22 30 30 H 1.08994 * 109.47258 * 183.88430 * 1 2 3 31 31 H 1.09006 * 109.46972 * 303.87683 * 1 2 3 32 32 H 1.08994 * 109.47163 * 63.87643 * 1 2 3 33 33 H 1.09005 * 110.49773 * 36.44817 * 4 2 1 34 34 H 1.09004 * 110.34505 * 274.05196 * 4 2 1 35 35 H 1.09001 * 109.46755 * 60.00376 * 8 6 5 36 36 H 1.09002 * 109.47412 * 300.01069 * 8 6 5 37 37 H 1.08992 * 109.47124 * 60.00181 * 9 8 6 38 38 H 1.08998 * 109.47126 * 299.99879 * 9 8 6 39 39 H 1.08993 * 109.68655 * 9.71252 * 13 12 10 40 40 H 1.09005 * 109.67857 * 249.16387 * 13 12 10 41 41 H 1.09003 * 109.50953 * 172.22359 * 14 13 12 42 42 H 1.08997 * 109.51109 * 292.32304 * 14 13 12 43 43 H 1.08998 * 109.51441 * 182.50893 * 16 15 14 44 44 H 1.08999 * 109.51491 * 302.66443 * 16 15 14 45 45 H 1.09001 * 109.68529 * 110.83375 * 17 12 10 46 46 H 1.09004 * 109.68383 * 350.28201 * 17 12 10 47 47 H 1.09004 * 109.88124 * 120.69949 * 18 5 4 48 48 H 1.08999 * 109.88171 * 241.71455 * 18 5 4 49 49 H 0.97003 * 119.99417 * 93.54970 * 21 19 18 50 50 H 0.96999 * 119.99768 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0844 -0.8118 1.2000 5 7 3.4280 -1.2422 0.7725 6 6 4.4491 -1.5603 1.5927 7 8 4.3027 -1.4989 2.7951 8 6 5.7726 -1.9923 1.0159 9 6 6.7507 -2.2935 2.1532 10 6 8.0744 -2.7249 1.5763 11 8 8.2209 -2.7860 0.3739 12 7 9.0951 -3.0438 2.3966 13 6 10.3969 -3.4672 1.8566 14 6 11.4934 -2.6321 2.5276 15 8 11.3400 -2.7072 3.9470 16 6 10.1084 -2.1670 4.4320 17 6 8.9411 -2.9778 3.8584 18 6 3.4678 -1.2731 -0.6969 19 6 2.0861 -0.8075 -1.2026 20 1 2.1913 -0.1719 -2.0818 21 7 1.2273 -1.9574 -1.4964 22 6 1.2818 -2.5561 -2.7267 23 1 1.9577 -2.1803 -3.4806 24 6 0.4684 -3.6459 -3.0049 25 7 0.5205 -4.2211 -4.1877 26 14 -0.7012 -4.2955 -1.7012 27 1 -2.0096 -3.6035 -1.8209 28 1 -0.8939 -5.7555 -1.8923 29 1 -0.1295 -4.0438 -0.3539 30 1 -0.3633 -1.0252 0.0696 31 1 -0.3633 0.5729 0.8533 32 1 -0.3633 0.4525 -0.9226 33 1 1.4538 -1.6784 1.3986 34 1 2.1524 -0.1801 2.0858 35 1 6.1748 -1.1942 0.3920 36 1 5.6306 -2.8887 0.4122 37 1 6.3482 -3.0917 2.7767 38 1 6.8927 -1.3972 2.7570 39 1 10.4183 -3.3036 0.7793 40 1 10.5571 -4.5239 2.0711 41 1 12.4716 -3.0220 2.2460 42 1 11.4087 -1.5942 2.2059 43 1 10.0902 -2.2222 5.5204 44 1 10.0181 -1.1272 4.1178 45 1 8.9545 -3.9850 4.2749 46 1 7.9985 -2.4899 4.1067 47 1 4.2425 -0.5982 -1.0610 48 1 3.6685 -2.2877 -1.0411 49 1 0.6199 -2.2946 -0.8194 50 1 -0.0482 -4.9824 -4.3822 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281462745.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:53 Heat of formation + Delta-G solvation = -117.073730 kcal Electronic energy + Delta-G solvation = -30095.075495 eV Core-core repulsion = 25928.922106 eV Total energy + Delta-G solvation = -4166.153389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.59979 -41.07079 -39.49378 -39.03363 -35.87977 -35.79671 -34.31424 -33.79549 -32.64316 -32.28747 -29.68270 -29.29153 -27.95538 -26.05650 -25.47887 -24.84910 -23.48549 -22.78659 -20.89773 -20.31751 -19.99343 -19.80987 -18.74302 -17.80981 -17.55951 -17.35823 -17.16122 -16.70818 -16.45958 -16.23428 -16.07006 -15.98635 -15.91597 -15.43529 -14.95806 -14.73198 -14.61143 -14.47642 -14.20042 -13.82973 -13.67832 -13.47519 -13.41664 -13.23955 -13.10657 -13.02225 -12.88470 -12.70917 -12.38979 -12.37562 -12.27318 -12.07790 -11.95305 -11.78824 -11.61849 -11.39546 -11.27411 -11.10464 -10.93657 -10.90739 -9.69659 -9.68169 -9.32511 -8.01885 -5.34709 1.35483 1.37496 1.44034 1.45279 1.54294 1.67554 2.07793 2.46797 2.84267 3.23305 3.27889 3.51332 3.57287 3.68494 3.76568 3.84885 3.90434 3.97334 3.99067 4.03558 4.07881 4.18932 4.24863 4.38719 4.42192 4.54333 4.57695 4.62184 4.63415 4.64105 4.72616 4.75089 4.82216 4.82979 4.84781 4.90677 4.95636 4.98498 5.19110 5.22811 5.29890 5.32050 5.48155 5.80257 6.07643 6.17402 6.22532 6.50142 6.97990 7.05885 7.08826 7.84012 8.01237 9.19387 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016287 B = 0.002368 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.743729 B =11822.993814 C =12683.729330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 H 0.115 0.885 4 C 0.111 3.889 5 N -0.611 5.611 6 C 0.528 3.472 7 O -0.578 6.578 8 C -0.115 4.115 9 C -0.112 4.112 10 C 0.516 3.484 11 O -0.577 6.577 12 N -0.619 5.619 13 C 0.072 3.928 14 C 0.053 3.947 15 O -0.395 6.395 16 C 0.045 3.955 17 C 0.066 3.934 18 C 0.080 3.920 19 C 0.165 3.835 20 H 0.083 0.917 21 N -0.739 5.739 22 C -0.222 4.222 23 H 0.066 0.934 24 C -0.060 4.060 25 N -0.981 5.981 26 Si 0.942 3.058 27 H -0.274 1.274 28 H -0.301 1.301 29 H -0.260 1.260 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.055 0.945 43 H 0.131 0.869 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.113 0.887 47 H 0.087 0.913 48 H 0.053 0.947 49 H 0.365 0.635 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.752 8.825 19.878 28.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.119 4.119 3 H 0.133 0.867 4 C -0.012 4.012 5 N -0.343 5.343 6 C 0.318 3.682 7 O -0.459 6.459 8 C -0.155 4.155 9 C -0.152 4.152 10 C 0.306 3.694 11 O -0.457 6.457 12 N -0.353 5.353 13 C -0.051 4.051 14 C -0.024 4.024 15 O -0.313 6.313 16 C -0.032 4.032 17 C -0.056 4.056 18 C -0.046 4.046 19 C 0.055 3.945 20 H 0.101 0.899 21 N -0.382 5.382 22 C -0.353 4.353 23 H 0.084 0.916 24 C -0.252 4.252 25 N -0.632 5.632 26 Si 0.771 3.229 27 H -0.200 1.200 28 H -0.229 1.229 29 H -0.185 1.185 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.136 0.864 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.144 0.856 42 H 0.073 0.927 43 H 0.149 0.851 44 H 0.078 0.922 45 H 0.106 0.894 46 H 0.131 0.869 47 H 0.105 0.895 48 H 0.071 0.929 49 H 0.199 0.801 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.010 8.684 19.819 28.153 hybrid contribution -1.061 -1.100 -0.209 1.542 sum 16.949 7.584 19.610 27.006 Atomic orbital electron populations 1.21567 0.93281 1.01379 1.02794 1.22662 0.96973 0.99588 0.92666 0.86685 1.22361 0.82505 0.97952 0.98350 1.48550 1.12227 1.65740 1.07781 1.20538 0.85541 0.76324 0.85787 1.90639 1.84158 1.55797 1.15355 1.21282 0.91032 1.04167 0.99057 1.21334 0.90336 1.05076 0.98496 1.20970 0.86222 0.75973 0.86213 1.90714 1.83667 1.54872 1.16437 1.48260 1.12247 1.66967 1.07802 1.22380 0.82442 0.99923 1.00323 1.23027 0.99340 0.99459 0.80579 1.87959 1.38642 1.82884 1.21862 1.23156 0.82548 0.96318 1.01191 1.22734 1.01643 1.03156 0.78114 1.23020 1.01169 1.01745 0.78642 1.21459 0.88041 0.88165 0.96807 0.89901 1.42798 1.47295 1.35449 1.12699 1.19036 1.17407 1.08540 0.90282 0.91573 1.25372 1.02148 0.99289 0.98342 1.69862 1.44376 1.25927 1.23051 0.85603 0.80100 0.77135 0.80068 1.20023 1.22850 1.18530 0.94366 0.90291 0.91901 0.93219 0.89643 0.87593 0.89272 0.87420 0.86392 0.89334 0.90045 0.85646 0.92663 0.85115 0.92238 0.89394 0.86850 0.89498 0.92854 0.80055 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.85 71.98 0.64 -2.68 16 2 C -0.10 -2.53 3.53 -9.33 -0.03 -2.56 16 3 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 4 C 0.11 3.09 6.36 86.93 0.55 3.64 16 5 N -0.61 -18.17 3.32 -811.32 -2.70 -20.87 16 6 C 0.53 15.46 7.85 87.66 0.69 16.15 16 7 O -0.58 -18.96 16.24 -3.04 -0.05 -19.01 16 8 C -0.12 -2.88 4.18 29.85 0.12 -2.75 16 9 C -0.11 -2.26 3.36 29.85 0.10 -2.16 16 10 C 0.52 11.79 7.71 87.66 0.68 12.47 16 11 O -0.58 -17.85 15.45 -3.04 -0.05 -17.90 16 12 N -0.62 -10.82 3.02 -817.43 -2.47 -13.28 16 13 C 0.07 1.15 6.64 86.35 0.57 1.72 16 14 C 0.05 0.66 6.98 72.08 0.50 1.16 16 15 O -0.39 -5.60 10.74 -148.98 -1.60 -7.20 16 16 C 0.04 0.44 6.98 72.07 0.50 0.94 16 17 C 0.07 0.73 6.54 86.34 0.56 1.29 16 18 C 0.08 2.47 6.22 86.73 0.54 3.01 16 19 C 0.16 5.43 3.37 46.18 0.16 5.59 16 20 H 0.08 2.71 8.12 -2.39 -0.02 2.69 16 21 N -0.74 -31.62 4.42 -317.33 -1.40 -33.02 16 22 C -0.22 -11.87 10.46 84.03 0.88 -10.99 16 23 H 0.07 3.85 8.06 -2.91 -0.02 3.82 16 24 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 25 N -0.98 -61.80 13.97 21.65 0.30 -61.50 16 26 Si 0.94 44.92 27.74 68.60 1.90 46.82 16 27 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 28 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 29 H -0.26 -11.44 6.52 99.48 0.65 -10.80 16 30 H 0.04 1.11 6.38 -2.39 -0.02 1.10 16 31 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 1.55 7.99 -2.38 -0.02 1.53 16 34 H 0.09 2.18 8.03 -2.39 -0.02 2.16 16 35 H 0.11 2.51 8.10 -2.39 -0.02 2.49 16 36 H 0.09 2.50 8.10 -2.39 -0.02 2.48 16 37 H 0.11 2.06 7.97 -2.39 -0.02 2.04 16 38 H 0.12 1.96 7.62 -2.39 -0.02 1.94 16 39 H 0.09 1.69 7.08 -2.39 -0.02 1.67 16 40 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.11 0.97 6.05 -2.38 -0.01 0.96 16 47 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 48 H 0.05 1.98 8.05 -2.39 -0.02 1.96 16 49 H 0.36 15.49 3.96 -92.71 -0.37 15.12 16 50 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -75.04 395.40 1.38 -73.66 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.51 Total: 30.45 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 6.93 Total: 21.84 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -6.27 Total: -128.67 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -1.70 Total: -44.11 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.90 Total: 46.82 kcal Total: -75.04 1.38 -73.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281462745.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.413 kcal (2) G-P(sol) polarization free energy of solvation -75.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds