Wall clock time and date at job start Tue Mar 31 2020 23:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.87395 * 2 1 4 4 C 1.54326 * 109.88158 * 121.17584 * 2 1 3 5 5 C 1.55156 * 102.94376 * 97.22162 * 4 2 1 6 6 H 1.09009 * 111.03664 * 277.41388 * 5 4 2 7 7 N 1.46895 * 111.00672 * 153.58101 * 5 4 2 8 8 C 1.46893 * 111.00318 * 161.34948 * 7 5 4 9 9 C 1.50708 * 109.47146 * 179.97438 * 8 7 5 10 10 O 1.21288 * 119.99815 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99719 * 180.02562 * 9 8 7 12 12 C 1.37101 * 119.99349 * 180.02562 * 11 9 8 13 13 H 1.07991 * 120.00515 * 359.97438 * 12 11 9 14 14 C 1.38955 * 119.99490 * 179.97438 * 12 11 9 15 15 N 1.31413 * 120.00236 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99845 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47174 * 270.00316 * 16 14 12 18 18 H 1.48501 * 109.47062 * 30.00267 * 16 14 12 19 19 H 1.48504 * 109.46913 * 150.00066 * 16 14 12 20 20 C 1.54911 * 101.58038 * 35.50104 * 5 4 2 21 21 N 1.47023 * 109.87733 * 238.97948 * 2 1 3 22 22 C 1.34774 * 125.64683 * 59.56536 * 21 2 1 23 23 O 1.21276 * 120.00213 * 359.97438 * 22 21 2 24 24 C 1.50704 * 119.99500 * 179.97438 * 22 21 2 25 25 C 1.53179 * 109.54395 * 299.81816 * 24 22 21 26 26 C 1.53100 * 109.15512 * 183.24270 * 25 24 22 27 27 O 1.42905 * 109.48886 * 57.47751 * 26 25 24 28 28 C 1.42900 * 114.09752 * 298.89048 * 27 26 25 29 29 C 1.53087 * 109.41668 * 61.15486 * 28 27 26 30 30 H 1.08999 * 109.47666 * 179.56798 * 1 2 3 31 31 H 1.09004 * 109.47358 * 299.56756 * 1 2 3 32 32 H 1.09004 * 109.47554 * 59.56241 * 1 2 3 33 33 H 1.09002 * 110.71673 * 338.85858 * 4 2 1 34 34 H 1.08997 * 110.72223 * 215.58864 * 4 2 1 35 35 H 1.00899 * 111.00063 * 37.39124 * 7 5 4 36 36 H 1.09002 * 109.47091 * 59.99845 * 8 7 5 37 37 H 1.09000 * 109.47343 * 299.99463 * 8 7 5 38 38 H 0.96996 * 120.00564 * 359.97438 * 11 9 8 39 39 H 0.97001 * 119.99781 * 179.97438 * 15 14 12 40 40 H 1.08996 * 110.36635 * 81.83286 * 20 5 4 41 41 H 1.09006 * 110.36359 * 204.15541 * 20 5 4 42 42 H 1.08994 * 109.54587 * 60.00549 * 24 22 21 43 43 H 1.08996 * 109.52462 * 303.05953 * 25 24 22 44 44 H 1.08999 * 109.51960 * 63.25610 * 25 24 22 45 45 H 1.09007 * 109.40988 * 297.49784 * 26 25 24 46 46 H 1.08998 * 109.49412 * 177.51405 * 26 25 24 47 47 H 1.08998 * 109.48063 * 301.17301 * 28 27 26 48 48 H 1.09005 * 109.49086 * 181.14530 * 28 27 26 49 49 H 1.09002 * 109.52530 * 182.48458 * 29 28 27 50 50 H 1.08998 * 109.52222 * 62.30054 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7513 1.2417 5 6 2.3518 -2.1705 0.6894 6 1 1.4453 -2.7752 0.6566 7 7 3.3963 -2.8352 1.4799 8 6 3.3754 -4.2881 1.2642 9 6 4.4586 -4.9341 2.0891 10 8 5.1776 -4.2512 2.7876 11 7 4.6290 -6.2705 2.0499 12 6 5.6142 -6.8581 2.8007 13 1 6.2539 -6.2503 3.4233 14 6 5.7895 -8.2360 2.7607 15 7 5.0108 -8.9758 2.0035 16 14 7.1323 -9.0367 3.7832 17 1 8.3855 -9.1036 2.9893 18 1 7.3658 -8.2333 5.0100 19 1 6.7129 -10.4097 4.1630 20 6 2.8567 -1.8489 -0.7393 21 7 2.0299 -0.7125 -1.1849 22 6 1.7752 -0.3812 -2.4662 23 8 1.0785 0.5792 -2.7172 24 6 2.3563 -1.2041 -3.5870 25 6 3.8855 -1.1807 -3.5004 26 6 4.4677 -1.9512 -4.6884 27 8 3.9993 -1.3722 -5.9080 28 6 2.5794 -1.4105 -6.0644 29 6 1.9212 -0.6164 -4.9330 30 1 -0.3634 -1.0276 -0.0077 31 1 -0.3634 0.5071 0.8939 32 1 -0.3634 0.5206 -0.8860 33 1 1.2917 -0.7918 2.0190 34 1 2.9656 -0.2855 1.6179 35 1 3.3040 -2.6138 2.4600 36 1 3.5467 -4.5013 0.2091 37 1 2.4053 -4.6858 1.5624 38 1 4.0543 -6.8165 1.4910 39 1 5.1335 -9.9376 1.9753 40 1 3.9090 -1.5659 -0.7150 41 1 2.7085 -2.7062 -1.3960 42 1 2.0021 -2.2318 -3.5064 43 1 4.2362 -0.1491 -3.5298 44 1 4.2047 -1.6487 -2.5693 45 1 4.1506 -2.9928 -4.6351 46 1 5.5561 -1.9006 -4.6565 47 1 2.2375 -2.4448 -6.0291 48 1 2.3071 -0.9702 -7.0237 49 1 0.8370 -0.6811 -5.0254 50 1 2.2310 0.4269 -4.9922 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283948915.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:48 Heat of formation + Delta-G solvation = -143.427366 kcal Electronic energy + Delta-G solvation = -30285.063340 eV Core-core repulsion = 26117.767172 eV Total energy + Delta-G solvation = -4167.296168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.75049 -40.25793 -39.85987 -38.74803 -36.23329 -35.56690 -34.97872 -33.23900 -32.76009 -31.89435 -31.03503 -27.98600 -27.16951 -26.72472 -25.73000 -24.55070 -23.39077 -21.73857 -21.34112 -20.99828 -20.13414 -19.85274 -18.33203 -17.67871 -17.38348 -17.01720 -16.90336 -16.75259 -16.65007 -16.29174 -15.90179 -15.73374 -15.31590 -15.10039 -14.99010 -14.72211 -14.63234 -14.50088 -14.08948 -13.91978 -13.73643 -13.50647 -13.36480 -13.30095 -13.09736 -12.93053 -12.80527 -12.54374 -12.39264 -12.35207 -12.12248 -12.04069 -11.96171 -11.69873 -11.67198 -11.47905 -11.41795 -10.93129 -10.44833 -10.30625 -9.98408 -9.74746 -9.38260 -8.44530 -5.92504 1.39642 1.44096 1.53069 1.55787 1.85210 2.09185 2.30880 2.86906 2.96740 3.23609 3.28698 3.44787 3.57757 3.62889 3.70818 3.76558 3.98640 4.00427 4.16624 4.21647 4.27657 4.29604 4.34716 4.37218 4.49829 4.51780 4.57216 4.61042 4.63691 4.65194 4.67972 4.77784 4.80919 4.85302 4.91704 4.98667 5.05318 5.07189 5.08191 5.21782 5.26813 5.40868 5.43957 5.90165 6.11085 6.25314 6.35256 6.46201 6.63029 7.07947 7.15890 7.60188 8.15375 8.72671 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012003 B = 0.002525 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.270276 B =11085.793653 C =12861.555124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.134 3.866 3 H 0.068 0.932 4 C -0.120 4.120 5 C 0.077 3.923 6 H 0.073 0.927 7 N -0.666 5.666 8 C 0.064 3.936 9 C 0.439 3.561 10 O -0.623 6.623 11 N -0.574 5.574 12 C -0.331 4.331 13 H 0.078 0.922 14 C -0.011 4.011 15 N -0.920 5.920 16 Si 0.989 3.011 17 H -0.272 1.272 18 H -0.273 1.273 19 H -0.272 1.272 20 C 0.107 3.893 21 N -0.610 5.610 22 C 0.532 3.468 23 O -0.576 6.576 24 C -0.103 4.103 25 C -0.148 4.148 26 C 0.060 3.940 27 O -0.403 6.403 28 C 0.061 3.939 29 C -0.130 4.130 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.353 0.647 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.116 0.884 43 H 0.060 0.940 44 H 0.094 0.906 45 H 0.068 0.932 46 H 0.105 0.895 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.080 0.920 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 12.551 -11.872 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.030 3.970 3 H 0.086 0.914 4 C -0.158 4.158 5 C -0.033 4.033 6 H 0.090 0.910 7 N -0.300 5.300 8 C -0.068 4.068 9 C 0.226 3.774 10 O -0.509 6.509 11 N -0.211 5.211 12 C -0.461 4.461 13 H 0.096 0.904 14 C -0.211 4.211 15 N -0.561 5.561 16 Si 0.813 3.187 17 H -0.197 1.197 18 H -0.198 1.198 19 H -0.197 1.197 20 C -0.016 4.016 21 N -0.343 5.343 22 C 0.322 3.678 23 O -0.455 6.455 24 C -0.124 4.124 25 C -0.186 4.186 26 C -0.016 4.016 27 O -0.323 6.323 28 C -0.016 4.016 29 C -0.168 4.168 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.173 0.827 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.231 0.769 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.112 0.888 45 H 0.087 0.913 46 H 0.123 0.877 47 H 0.086 0.914 48 H 0.126 0.874 49 H 0.099 0.901 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.183 13.511 -12.236 20.411 hybrid contribution -0.550 -0.983 1.038 1.532 sum -9.733 12.528 -11.199 19.419 Atomic orbital electron populations 1.22082 0.94181 1.02360 1.02703 1.21574 0.95028 0.96108 0.84274 0.91432 1.22838 1.02806 0.93708 0.96434 1.22645 0.92588 0.94982 0.93101 0.90966 1.59937 1.48816 1.06845 1.14379 1.21613 0.95905 0.88595 1.00670 1.20881 0.88141 0.82269 0.86060 1.90506 1.50615 1.63310 1.46496 1.41929 1.31598 1.06120 1.41451 1.19637 1.11830 0.91135 1.23503 0.90359 1.25972 1.00368 0.96276 0.98511 1.69661 1.39621 1.06934 1.39850 0.84988 0.77970 0.77476 0.78300 1.19742 1.19815 1.19722 1.22523 0.95249 0.88563 0.95313 1.48583 1.50313 1.30485 1.04906 1.20647 0.79692 0.84607 0.82818 1.90658 1.40609 1.30484 1.83794 1.21379 0.97100 1.00853 0.93038 1.22291 0.92768 1.02282 1.01238 1.22695 1.00196 0.96268 0.82456 1.87925 1.22593 1.82020 1.39717 1.22730 0.80084 1.00106 0.98661 1.21966 1.01606 1.00189 0.93050 0.92216 0.89978 0.93378 0.88046 0.89621 0.82689 0.87389 0.91299 0.76934 0.91369 0.90177 0.89132 0.86599 0.92068 0.88766 0.91340 0.87691 0.91408 0.87424 0.90091 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.06 71.98 0.65 -2.09 16 2 C 0.13 2.49 3.49 45.34 0.16 2.65 16 3 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.12 -1.95 5.96 31.78 0.19 -1.76 16 5 C 0.08 1.42 3.32 46.31 0.15 1.58 16 6 H 0.07 1.21 7.92 -2.38 -0.02 1.19 16 7 N -0.67 -17.07 6.00 -488.40 -2.93 -20.00 16 8 C 0.06 1.86 6.04 85.56 0.52 2.38 16 9 C 0.44 19.13 7.82 87.66 0.69 19.81 16 10 O -0.62 -32.30 15.78 -3.05 -0.05 -32.35 16 11 N -0.57 -27.63 5.29 -306.98 -1.62 -29.25 16 12 C -0.33 -18.07 9.68 84.04 0.81 -17.26 16 13 H 0.08 4.58 7.16 -2.92 -0.02 4.56 16 14 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 15 N -0.92 -47.89 13.05 21.66 0.28 -47.61 16 16 Si 0.99 41.65 29.55 68.60 2.03 43.68 16 17 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 C 0.11 1.90 4.79 86.86 0.42 2.31 16 21 N -0.61 -12.06 3.08 -788.06 -2.42 -14.48 16 22 C 0.53 12.05 7.00 87.66 0.61 12.67 16 23 O -0.58 -16.98 14.87 -3.02 -0.04 -17.02 16 24 C -0.10 -1.77 1.96 -11.42 -0.02 -1.79 16 25 C -0.15 -2.44 5.19 30.69 0.16 -2.28 16 26 C 0.06 0.93 6.84 72.02 0.49 1.42 16 27 O -0.40 -7.71 10.77 -148.98 -1.60 -9.31 16 28 C 0.06 0.89 6.84 72.01 0.49 1.38 16 29 C -0.13 -2.27 4.74 30.68 0.15 -2.13 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.09 6.74 -2.39 -0.02 1.07 16 33 H 0.10 1.32 7.83 -2.39 -0.02 1.30 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.35 9.64 8.23 -89.69 -0.74 8.90 16 36 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.07 1.72 8.09 -2.39 -0.02 1.70 16 38 H 0.40 18.04 7.90 -92.71 -0.73 17.31 16 39 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 40 H 0.08 1.59 7.14 -2.39 -0.02 1.57 16 41 H 0.09 1.34 7.34 -2.38 -0.02 1.32 16 42 H 0.12 1.58 7.85 -2.39 -0.02 1.56 16 43 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.09 1.44 5.13 -2.39 -0.01 1.43 16 45 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 46 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 49 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.06 1.27 8.03 -2.39 -0.02 1.25 16 Total: -1.00 -69.69 395.16 -0.94 -70.63 By element: Atomic # 1 Polarization: 39.45 SS G_CDS: -0.51 Total: 38.94 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 5.93 Total: 16.78 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -6.69 Total: -111.34 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: -1.70 Total: -58.68 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -69.69 -0.94 -70.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283948915.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.798 kcal (2) G-P(sol) polarization free energy of solvation -69.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds