Wall clock time and date at job start Tue Mar 31 2020 23:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.42046 * 2 1 4 4 O 1.44684 * 110.35726 * 237.71539 * 2 1 3 5 5 C 1.44422 * 105.13943 * 200.67858 * 4 2 1 6 6 C 1.54482 * 104.90119 * 40.49681 * 5 4 2 7 7 C 1.54486 * 110.36848 * 122.30047 * 2 1 3 8 8 H 1.08990 * 110.51551 * 261.45734 * 7 2 1 9 9 C 1.50707 * 110.50908 * 24.16729 * 7 2 1 10 10 O 1.21283 * 119.99524 * 79.95158 * 9 7 2 11 11 N 1.34773 * 120.00086 * 259.95159 * 9 7 2 12 12 C 1.46499 * 120.00096 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47080 * 179.97438 * 12 11 9 14 14 N 1.46895 * 109.46843 * 179.97438 * 13 12 11 15 15 C 1.46907 * 111.00020 * 169.99730 * 14 13 12 16 16 C 1.50700 * 109.47088 * 286.08106 * 15 14 13 17 17 O 1.21286 * 120.00297 * 354.38658 * 16 15 14 18 18 N 1.34780 * 119.99401 * 174.38819 * 16 15 14 19 19 C 1.37097 * 119.99325 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00383 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99961 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99524 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00274 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46920 * 89.99998 * 23 21 19 25 25 H 1.48497 * 109.47369 * 209.99788 * 23 21 19 26 26 H 1.48500 * 109.47118 * 329.99956 * 23 21 19 27 27 C 1.46901 * 111.00165 * 293.95349 * 14 13 12 28 28 C 1.52998 * 117.49772 * 246.51390 * 27 14 13 29 29 C 1.52999 * 60.00080 * 252.50836 * 28 27 14 30 30 H 1.08999 * 109.47270 * 291.80937 * 1 2 3 31 31 H 1.09001 * 109.46721 * 51.80689 * 1 2 3 32 32 H 1.09004 * 109.47061 * 171.80493 * 1 2 3 33 33 H 1.08996 * 110.37163 * 281.60598 * 5 4 2 34 34 H 1.09002 * 110.37243 * 159.38624 * 5 4 2 35 35 H 1.09000 * 110.50602 * 94.61392 * 6 5 4 36 36 H 1.08994 * 110.51051 * 217.32220 * 6 5 4 37 37 H 0.96998 * 119.99836 * 359.97438 * 11 9 7 38 38 H 1.08999 * 109.47006 * 299.99968 * 12 11 9 39 39 H 1.09002 * 109.46960 * 59.99398 * 12 11 9 40 40 H 1.08995 * 109.46940 * 299.99724 * 13 12 11 41 41 H 1.08998 * 109.46872 * 59.99706 * 13 12 11 42 42 H 1.09007 * 109.46722 * 46.07825 * 15 14 13 43 43 H 1.08997 * 109.47316 * 166.07606 * 15 14 13 44 44 H 0.96995 * 120.00754 * 0.02562 * 18 16 15 45 45 H 0.97003 * 119.99427 * 180.02562 * 22 21 19 46 46 H 1.08990 * 115.55104 * 32.21964 * 27 14 13 47 47 H 1.08998 * 117.50052 * 359.97438 * 28 27 14 48 48 H 1.08997 * 117.49888 * 145.01948 * 28 27 14 49 49 H 1.08994 * 117.50324 * 252.50789 * 29 28 27 50 50 H 1.09003 * 117.49751 * 107.49019 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0334 -0.7245 -1.1468 5 6 3.3874 -1.0872 -0.7992 6 6 3.3177 -1.5056 0.6863 7 6 2.0677 -0.7739 1.2242 8 1 2.3428 -0.0838 2.0216 9 6 1.0442 -1.7664 1.7126 10 8 0.9147 -2.8317 1.1475 11 7 0.2729 -1.4702 2.7774 12 6 -0.7217 -2.4352 3.2525 13 6 -1.4554 -1.8566 4.4641 14 7 -2.4530 -2.8240 4.9402 15 6 -3.0105 -2.4113 6.2351 16 6 -1.9901 -2.6457 7.3190 17 8 -0.9454 -3.2038 7.0580 18 7 -2.2385 -2.2351 8.5785 19 6 -1.3104 -2.4488 9.5647 20 1 -0.3801 -2.9458 9.3322 21 6 -1.5666 -2.0260 10.8633 22 7 -2.6988 -1.4218 11.1462 23 14 -0.3018 -2.3166 12.2069 24 1 0.6222 -1.1561 12.2761 25 1 -0.9931 -2.4774 13.5112 26 1 0.4712 -3.5472 11.9013 27 6 -3.5172 -3.0153 3.9457 28 6 -4.9227 -2.5358 4.3140 29 6 -4.6124 -4.0334 4.2700 30 1 -0.3634 0.3818 0.9541 31 1 -0.3633 0.6354 -0.8077 32 1 -0.3633 -1.0172 -0.1465 33 1 4.0526 -0.2325 -0.9219 34 1 3.7261 -1.9219 -1.4131 35 1 3.1955 -2.5852 0.7735 36 1 4.2108 -1.1772 1.2178 37 1 0.3768 -0.6183 3.2295 38 1 -1.4382 -2.6399 2.4571 39 1 -0.2221 -3.3608 3.5386 40 1 -0.7386 -1.6523 5.2594 41 1 -1.9548 -0.9309 4.1784 42 1 -3.2661 -1.3522 6.1996 43 1 -3.9066 -2.9944 6.4474 44 1 -3.0741 -1.7891 8.7874 45 1 -2.8775 -1.1263 12.0527 46 1 -3.2099 -2.9213 2.9043 47 1 -5.0578 -2.0788 5.2943 48 1 -5.5402 -2.1261 3.5148 49 1 -5.0257 -4.6089 3.4418 50 1 -4.5433 -4.5612 5.2211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317558735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:28 Heat of formation + Delta-G solvation = -79.035444 kcal Electronic energy + Delta-G solvation = -29987.721349 eV Core-core repulsion = 25823.217424 eV Total energy + Delta-G solvation = -4164.503925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.78699 -39.40476 -38.45882 -37.51141 -35.33226 -34.03496 -33.30556 -32.64793 -31.80589 -31.27010 -29.40640 -26.99113 -26.13202 -24.34776 -23.26843 -22.41235 -22.31138 -22.00707 -20.37696 -19.99445 -18.86065 -17.88113 -17.55781 -16.85669 -16.68989 -16.27040 -15.82089 -15.57380 -15.43142 -15.33320 -14.68744 -14.56625 -14.23805 -14.06385 -13.82028 -13.57435 -13.18843 -13.11951 -12.69279 -12.59054 -12.53748 -12.48875 -12.19219 -11.97504 -11.58062 -11.53886 -11.41645 -11.36241 -11.29263 -11.24299 -11.15074 -10.99921 -10.65495 -10.42002 -10.28862 -10.24541 -10.15626 -9.79364 -9.52021 -9.07305 -8.44372 -7.99534 -7.86091 -6.44605 -3.85415 2.49904 2.94433 3.15093 3.24274 3.30234 3.55735 3.75011 3.87367 4.01198 4.15057 4.21489 4.33970 4.53576 4.73916 4.78452 4.82407 4.91784 4.95233 4.99374 5.00291 5.04302 5.11518 5.16789 5.21569 5.24349 5.31028 5.47740 5.51283 5.55083 5.59694 5.61503 5.68428 5.72568 5.80061 5.86819 5.94330 5.99596 6.09267 6.13882 6.19233 6.24173 6.36849 6.51399 7.11517 7.25579 7.40513 7.52418 8.03142 8.14492 8.58805 9.15472 9.51351 10.03235 10.73115 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.002480 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.888087 B =11288.144963 C =13011.255765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.089 3.911 3 H 0.080 0.920 4 O -0.365 6.365 5 C 0.048 3.952 6 C -0.142 4.142 7 C -0.144 4.144 8 H 0.103 0.897 9 C 0.527 3.473 10 O -0.532 6.532 11 N -0.726 5.726 12 C 0.126 3.874 13 C 0.052 3.948 14 N -0.477 5.477 15 C 0.043 3.957 16 C 0.442 3.558 17 O -0.574 6.574 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.020 3.980 28 C -0.224 4.224 29 C -0.171 4.171 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.399 0.601 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.034 0.966 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.120 0.880 47 H 0.100 0.900 48 H 0.091 0.909 49 H 0.096 0.904 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 6.337 -19.537 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.031 3.969 3 H 0.098 0.902 4 O -0.284 6.284 5 C -0.029 4.029 6 C -0.180 4.180 7 C -0.166 4.166 8 H 0.121 0.879 9 C 0.312 3.688 10 O -0.408 6.408 11 N -0.378 5.378 12 C 0.002 3.998 13 C -0.076 4.076 14 N -0.198 5.198 15 C -0.088 4.088 16 C 0.227 3.773 17 O -0.457 6.457 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.090 4.090 28 C -0.263 4.263 29 C -0.209 4.209 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.233 0.767 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.112 0.888 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.138 0.862 47 H 0.119 0.881 48 H 0.110 0.890 49 H 0.114 0.886 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.723 4.735 -20.045 20.930 hybrid contribution -0.301 1.409 1.387 2.000 sum 3.422 6.145 -18.658 19.939 Atomic orbital electron populations 1.21951 0.92932 1.03881 1.02710 1.22889 0.95693 0.94795 0.83544 0.90220 1.89238 1.27189 1.74476 1.37456 1.23373 0.84575 0.99886 0.95025 1.22950 0.96113 1.02870 0.96078 1.22804 0.95893 0.97882 1.00017 0.87857 1.20101 0.81460 0.87548 0.79657 1.90718 1.68802 1.24741 1.56492 1.45997 1.38787 1.21158 1.31898 1.21313 0.90470 0.92709 0.95270 1.22205 0.95372 0.92434 0.97634 1.61221 1.11662 1.46170 1.00793 1.21997 0.98165 0.99367 0.89290 1.19751 0.88912 0.85139 0.83543 1.90532 1.27272 1.46041 1.81882 1.41870 1.19423 1.52285 1.06656 1.19684 0.99832 1.35950 0.87287 0.87939 1.25256 0.97362 0.96861 0.98466 1.69614 1.23487 1.39777 1.21472 0.85869 0.79942 0.78952 0.79611 1.20449 1.20920 1.19397 1.22783 0.85732 1.04135 0.96348 1.23617 1.00901 0.98171 1.03660 1.23065 1.02121 0.91942 1.03765 0.90889 0.91410 0.90996 0.92205 0.88828 0.88964 0.89854 0.76690 0.91773 0.90073 0.88656 0.94747 0.92978 0.88834 0.77561 0.91881 0.86236 0.88145 0.89031 0.88570 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 8.55 37.16 0.32 -1.09 16 2 C 0.09 0.79 3.84 -25.95 -0.10 0.69 16 3 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 4 O -0.36 -4.12 11.37 -35.23 -0.40 -4.52 16 5 C 0.05 0.41 7.62 37.94 0.29 0.70 16 6 C -0.14 -1.25 6.59 -25.16 -0.17 -1.42 16 7 C -0.14 -1.30 3.43 -90.20 -0.31 -1.61 16 8 H 0.10 0.66 8.12 -51.93 -0.42 0.24 16 9 C 0.53 6.50 4.78 -10.98 -0.05 6.45 16 10 O -0.53 -8.77 15.75 5.55 0.09 -8.68 16 11 N -0.73 -8.09 5.33 -60.29 -0.32 -8.41 16 12 C 0.13 1.69 5.67 -4.04 -0.02 1.67 16 13 C 0.05 0.73 4.71 -3.83 -0.02 0.71 16 14 N -0.48 -7.53 4.28 -228.09 -0.98 -8.51 16 15 C 0.04 0.73 4.10 -4.97 -0.02 0.71 16 16 C 0.44 10.07 7.31 -10.98 -0.08 9.99 16 17 O -0.57 -15.09 14.94 5.55 0.08 -15.01 16 18 N -0.57 -13.92 5.29 -10.96 -0.06 -13.98 16 19 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 20 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 21 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 22 N -0.90 -24.12 13.05 55.50 0.72 -23.39 16 23 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 27 C 0.02 0.25 5.83 -67.71 -0.39 -0.14 16 28 C -0.22 -2.53 9.56 -26.73 -0.26 -2.78 16 29 C -0.17 -2.06 9.91 -26.73 -0.27 -2.32 16 30 H 0.07 0.54 7.82 -51.93 -0.41 0.14 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.83 7.19 -51.93 -0.37 0.46 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.02 7.04 -51.93 -0.37 0.66 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.40 3.41 8.45 -40.82 -0.35 3.07 16 38 H 0.06 0.84 6.40 -51.93 -0.33 0.51 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.10 1.61 6.72 -51.93 -0.35 1.26 16 41 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 42 H 0.05 0.80 7.81 -51.92 -0.41 0.40 16 43 H 0.09 1.50 5.66 -51.93 -0.29 1.20 16 44 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 45 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.12 1.39 6.34 -51.93 -0.33 1.06 16 47 H 0.10 1.18 6.02 -51.93 -0.31 0.87 16 48 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.10 1.33 7.47 -51.93 -0.39 0.94 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -33.68 399.61 -9.14 -42.82 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -7.96 Total: 14.18 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.32 Total: 3.76 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.63 Total: -54.29 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.23 Total: -28.22 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.68 -9.14 -42.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317558735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.217 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds