Wall clock time and date at job start Tue Mar 31 2020 23:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.42046 * 2 1 4 4 O 1.44684 * 110.35726 * 237.71539 * 2 1 3 5 5 C 1.44422 * 105.13943 * 200.67858 * 4 2 1 6 6 C 1.54482 * 104.90119 * 40.49681 * 5 4 2 7 7 C 1.54486 * 110.36848 * 122.30047 * 2 1 3 8 8 H 1.08990 * 110.51551 * 261.45734 * 7 2 1 9 9 C 1.50707 * 110.50908 * 24.16729 * 7 2 1 10 10 O 1.21283 * 119.99524 * 79.95158 * 9 7 2 11 11 N 1.34773 * 120.00086 * 259.95159 * 9 7 2 12 12 C 1.46499 * 120.00096 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47080 * 179.97438 * 12 11 9 14 14 N 1.46895 * 109.46843 * 179.97438 * 13 12 11 15 15 C 1.46907 * 111.00020 * 169.99730 * 14 13 12 16 16 C 1.50700 * 109.47088 * 286.08106 * 15 14 13 17 17 O 1.21286 * 120.00297 * 354.38658 * 16 15 14 18 18 N 1.34780 * 119.99401 * 174.38819 * 16 15 14 19 19 C 1.37097 * 119.99325 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00383 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99961 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99524 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00274 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46920 * 89.99998 * 23 21 19 25 25 H 1.48497 * 109.47369 * 209.99788 * 23 21 19 26 26 H 1.48500 * 109.47118 * 329.99956 * 23 21 19 27 27 C 1.46901 * 111.00165 * 293.95349 * 14 13 12 28 28 C 1.52998 * 117.49772 * 246.51390 * 27 14 13 29 29 C 1.52999 * 60.00080 * 252.50836 * 28 27 14 30 30 H 1.08999 * 109.47270 * 291.80937 * 1 2 3 31 31 H 1.09001 * 109.46721 * 51.80689 * 1 2 3 32 32 H 1.09004 * 109.47061 * 171.80493 * 1 2 3 33 33 H 1.08996 * 110.37163 * 281.60598 * 5 4 2 34 34 H 1.09002 * 110.37243 * 159.38624 * 5 4 2 35 35 H 1.09000 * 110.50602 * 94.61392 * 6 5 4 36 36 H 1.08994 * 110.51051 * 217.32220 * 6 5 4 37 37 H 0.96998 * 119.99836 * 359.97438 * 11 9 7 38 38 H 1.08999 * 109.47006 * 299.99968 * 12 11 9 39 39 H 1.09002 * 109.46960 * 59.99398 * 12 11 9 40 40 H 1.08995 * 109.46940 * 299.99724 * 13 12 11 41 41 H 1.08998 * 109.46872 * 59.99706 * 13 12 11 42 42 H 1.09007 * 109.46722 * 46.07825 * 15 14 13 43 43 H 1.08997 * 109.47316 * 166.07606 * 15 14 13 44 44 H 0.96995 * 120.00754 * 0.02562 * 18 16 15 45 45 H 0.97003 * 119.99427 * 180.02562 * 22 21 19 46 46 H 1.08990 * 115.55104 * 32.21964 * 27 14 13 47 47 H 1.08998 * 117.50052 * 359.97438 * 28 27 14 48 48 H 1.08997 * 117.49888 * 145.01948 * 28 27 14 49 49 H 1.08994 * 117.50324 * 252.50789 * 29 28 27 50 50 H 1.09003 * 117.49751 * 107.49019 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0334 -0.7245 -1.1468 5 6 3.3874 -1.0872 -0.7992 6 6 3.3177 -1.5056 0.6863 7 6 2.0677 -0.7739 1.2242 8 1 2.3428 -0.0838 2.0216 9 6 1.0442 -1.7664 1.7126 10 8 0.9147 -2.8317 1.1475 11 7 0.2729 -1.4702 2.7774 12 6 -0.7217 -2.4352 3.2525 13 6 -1.4554 -1.8566 4.4641 14 7 -2.4530 -2.8240 4.9402 15 6 -3.0105 -2.4113 6.2351 16 6 -1.9901 -2.6457 7.3190 17 8 -0.9454 -3.2038 7.0580 18 7 -2.2385 -2.2351 8.5785 19 6 -1.3104 -2.4488 9.5647 20 1 -0.3801 -2.9458 9.3322 21 6 -1.5666 -2.0260 10.8633 22 7 -2.6988 -1.4218 11.1462 23 14 -0.3018 -2.3166 12.2069 24 1 0.6222 -1.1561 12.2761 25 1 -0.9931 -2.4774 13.5112 26 1 0.4712 -3.5472 11.9013 27 6 -3.5172 -3.0153 3.9457 28 6 -4.9227 -2.5358 4.3140 29 6 -4.6124 -4.0334 4.2700 30 1 -0.3634 0.3818 0.9541 31 1 -0.3633 0.6354 -0.8077 32 1 -0.3633 -1.0172 -0.1465 33 1 4.0526 -0.2325 -0.9219 34 1 3.7261 -1.9219 -1.4131 35 1 3.1955 -2.5852 0.7735 36 1 4.2108 -1.1772 1.2178 37 1 0.3768 -0.6183 3.2295 38 1 -1.4382 -2.6399 2.4571 39 1 -0.2221 -3.3608 3.5386 40 1 -0.7386 -1.6523 5.2594 41 1 -1.9548 -0.9309 4.1784 42 1 -3.2661 -1.3522 6.1996 43 1 -3.9066 -2.9944 6.4474 44 1 -3.0741 -1.7891 8.7874 45 1 -2.8775 -1.1263 12.0527 46 1 -3.2099 -2.9213 2.9043 47 1 -5.0578 -2.0788 5.2943 48 1 -5.5402 -2.1261 3.5148 49 1 -5.0257 -4.6089 3.4418 50 1 -4.5433 -4.5612 5.2211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317558735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:27 Heat of formation + Delta-G solvation = -105.325866 kcal Electronic energy + Delta-G solvation = -29988.861387 eV Core-core repulsion = 25823.217424 eV Total energy + Delta-G solvation = -4165.643963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.65160 -40.74756 -39.44764 -39.03121 -36.41801 -35.93721 -34.45460 -33.50612 -33.24339 -32.47527 -30.66750 -28.18871 -27.17858 -26.06347 -24.26503 -23.25113 -23.11660 -22.93305 -21.73086 -21.01328 -20.38535 -19.71362 -18.50540 -18.15572 -17.57835 -17.32625 -16.89524 -16.54705 -16.50590 -16.42643 -16.27831 -15.80827 -15.59830 -15.53980 -15.21383 -14.57023 -14.43585 -14.29633 -13.87618 -13.63057 -13.48314 -13.39652 -13.30340 -13.25764 -12.97514 -12.90178 -12.54751 -12.42130 -12.35096 -12.30342 -12.24045 -12.12537 -11.98785 -11.93455 -11.71409 -11.47706 -11.23768 -10.98759 -10.65103 -10.27605 -10.13453 -9.99442 -9.06150 -8.45923 -5.94168 1.37578 1.41869 1.54075 1.54413 1.96106 2.05980 2.28969 2.69377 2.90856 2.98537 3.20765 3.40267 3.46516 3.62056 3.69645 3.83544 3.95608 4.02087 4.09588 4.10743 4.16629 4.20574 4.27719 4.33963 4.34385 4.36711 4.46990 4.48728 4.51451 4.62460 4.80344 4.83592 4.84998 4.89587 4.91744 4.95998 4.97588 5.08695 5.09691 5.16681 5.27255 5.36320 5.41728 5.83522 5.86877 6.05837 6.15418 6.50441 6.61673 7.14268 7.20955 7.57592 8.13731 8.71389 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.002480 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.888087 B =11288.144963 C =13011.255765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.087 3.913 3 H 0.113 0.887 4 O -0.397 6.397 5 C 0.045 3.955 6 C -0.144 4.144 7 C -0.141 4.141 8 H 0.138 0.862 9 C 0.524 3.476 10 O -0.581 6.581 11 N -0.715 5.715 12 C 0.140 3.860 13 C 0.061 3.939 14 N -0.503 5.503 15 C 0.059 3.941 16 C 0.441 3.559 17 O -0.613 6.613 18 N -0.574 5.574 19 C -0.329 4.329 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.275 1.275 27 C 0.008 3.992 28 C -0.205 4.205 29 C -0.177 4.177 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.414 0.586 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.133 0.867 47 H 0.097 0.903 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 8.603 -19.920 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.029 3.971 3 H 0.131 0.869 4 O -0.317 6.317 5 C -0.031 4.031 6 C -0.182 4.182 7 C -0.163 4.163 8 H 0.156 0.844 9 C 0.311 3.689 10 O -0.460 6.460 11 N -0.368 5.368 12 C 0.015 3.985 13 C -0.067 4.067 14 N -0.225 5.225 15 C -0.072 4.072 16 C 0.228 3.772 17 O -0.499 6.499 18 N -0.212 5.212 19 C -0.459 4.459 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.200 1.200 27 C -0.101 4.101 28 C -0.244 4.244 29 C -0.215 4.215 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.251 0.749 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.150 0.850 47 H 0.115 0.885 48 H 0.133 0.867 49 H 0.133 0.867 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.419 7.042 -20.422 21.871 hybrid contribution -0.227 0.655 1.452 1.609 sum 3.191 7.697 -18.970 20.719 Atomic orbital electron populations 1.21957 0.93370 1.02019 1.03995 1.23124 0.95505 0.95945 0.82523 0.86909 1.89205 1.28656 1.75132 1.38719 1.23535 0.84003 1.01025 0.94520 1.22978 0.97193 1.01001 0.96986 1.22924 0.94664 0.97489 1.01222 0.84364 1.20790 0.81563 0.87492 0.79043 1.90695 1.70223 1.27073 1.58020 1.45896 1.38028 1.21281 1.31604 1.21005 0.90556 0.91755 0.95174 1.22068 0.94695 0.93399 0.96511 1.61107 1.13191 1.47155 1.01082 1.21800 0.96242 1.01010 0.88103 1.20774 0.89294 0.83150 0.84002 1.90506 1.29406 1.47376 1.82608 1.41925 1.19252 1.52959 1.07074 1.19612 1.00009 1.37464 0.88822 0.90457 1.25991 0.99167 0.96156 0.99878 1.69671 1.24435 1.39775 1.22234 0.84970 0.77798 0.78684 0.77158 1.19477 1.19669 1.20018 1.22847 0.85666 1.05562 0.96015 1.23648 0.99324 0.97230 1.04173 1.23130 1.02019 0.92712 1.03618 0.89258 0.90466 0.94342 0.89321 0.89109 0.92118 0.87093 0.74873 0.91237 0.93925 0.91750 0.91779 0.90598 0.87545 0.77068 0.91347 0.84996 0.88472 0.86668 0.86710 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 8.55 71.98 0.62 -1.96 16 2 C 0.09 1.36 3.84 31.10 0.12 1.48 16 3 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 4 O -0.40 -8.62 11.37 -148.98 -1.69 -10.31 16 5 C 0.05 0.71 7.62 72.49 0.55 1.26 16 6 C -0.14 -2.38 6.59 31.61 0.21 -2.17 16 7 C -0.14 -2.31 3.43 -10.52 -0.04 -2.35 16 8 H 0.14 1.27 8.12 -2.39 -0.02 1.25 16 9 C 0.52 12.91 4.78 87.66 0.42 13.33 16 10 O -0.58 -20.08 15.75 -3.04 -0.05 -20.13 16 11 N -0.72 -15.60 5.33 -463.06 -2.47 -18.07 16 12 C 0.14 3.81 5.67 86.38 0.49 4.30 16 13 C 0.06 1.71 4.71 86.30 0.41 2.12 16 14 N -0.50 -15.66 4.28 -875.54 -3.75 -19.41 16 15 C 0.06 1.98 4.10 85.56 0.35 2.33 16 16 C 0.44 20.48 7.31 87.66 0.64 21.13 16 17 O -0.61 -33.48 14.94 -3.05 -0.05 -33.52 16 18 N -0.57 -28.82 5.29 -306.98 -1.62 -30.44 16 19 C -0.33 -18.41 9.68 84.04 0.81 -17.60 16 20 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 22 N -0.92 -48.84 13.05 21.66 0.28 -48.55 16 23 Si 0.99 42.43 29.55 68.60 2.03 44.46 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 27 C 0.01 0.19 5.83 44.91 0.26 0.45 16 28 C -0.20 -4.03 9.56 30.59 0.29 -3.74 16 29 C -0.18 -3.97 9.91 30.59 0.30 -3.67 16 30 H 0.09 1.12 7.82 -2.39 -0.02 1.10 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 0.89 7.19 -2.39 -0.02 0.88 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.40 7.04 -2.39 -0.02 1.39 16 36 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.41 6.42 8.45 -92.71 -0.78 5.64 16 38 H 0.07 1.83 6.40 -2.39 -0.02 1.81 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 2.21 6.72 -2.39 -0.02 2.19 16 41 H 0.06 1.40 8.12 -2.39 -0.02 1.38 16 42 H 0.08 2.19 7.81 -2.38 -0.02 2.17 16 43 H 0.11 3.30 5.66 -2.39 -0.01 3.28 16 44 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16 45 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 46 H 0.13 2.82 6.34 -2.39 -0.02 2.81 16 47 H 0.10 2.01 6.02 -2.39 -0.01 1.99 16 48 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.08 2.13 7.47 -2.39 -0.02 2.11 16 Total: -1.00 -76.76 399.61 -1.95 -78.72 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: -0.54 Total: 42.52 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 5.90 Total: 14.74 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -7.56 Total: -116.47 kcal Atomic # 8 Polarization: -62.17 SS G_CDS: -1.79 Total: -63.96 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -76.76 -1.95 -78.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317558735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.607 kcal (2) G-P(sol) polarization free energy of solvation -76.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds