Wall clock time and date at job start Tue Mar 31 2020 23:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.41981 * 2 1 4 4 O 1.44782 * 110.49094 * 122.45727 * 2 1 3 5 5 C 1.44424 * 105.29951 * 159.32478 * 4 2 1 6 6 C 1.54478 * 104.80098 * 319.45436 * 5 4 2 7 7 C 1.54478 * 110.37269 * 237.69449 * 2 1 3 8 8 H 1.09001 * 110.51185 * 98.40250 * 7 2 1 9 9 C 1.50703 * 110.50954 * 335.83256 * 7 2 1 10 10 O 1.21280 * 119.99695 * 279.89314 * 9 7 2 11 11 N 1.34772 * 119.99678 * 99.89556 * 9 7 2 12 12 C 1.46511 * 119.99821 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47170 * 180.02562 * 12 11 9 14 14 N 1.46897 * 109.46942 * 179.97438 * 13 12 11 15 15 C 1.46902 * 110.99921 * 169.99727 * 14 13 12 16 16 C 1.50704 * 109.47162 * 289.04655 * 15 14 13 17 17 O 1.21289 * 120.00156 * 355.21608 * 16 15 14 18 18 N 1.34774 * 120.00034 * 175.20935 * 16 15 14 19 19 C 1.37097 * 120.00310 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99730 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00267 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99940 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00154 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47346 * 60.00226 * 23 21 19 25 25 H 1.48504 * 109.47254 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47248 * 300.00034 * 23 21 19 27 27 C 1.46897 * 111.00114 * 293.95491 * 14 13 12 28 28 C 1.53001 * 117.50126 * 102.38121 * 27 14 13 29 29 C 1.53002 * 117.50023 * 171.04182 * 27 14 13 30 30 H 1.09000 * 109.47190 * 188.24283 * 1 2 3 31 31 H 1.09000 * 109.46904 * 308.23801 * 1 2 3 32 32 H 1.08997 * 109.47153 * 68.24111 * 1 2 3 33 33 H 1.08994 * 110.37276 * 200.62377 * 5 4 2 34 34 H 1.09002 * 110.46220 * 78.33044 * 5 4 2 35 35 H 1.08993 * 110.51218 * 265.33274 * 6 5 4 36 36 H 1.09006 * 110.51168 * 142.62017 * 6 5 4 37 37 H 0.96993 * 120.00500 * 0.02562 * 11 9 7 38 38 H 1.08994 * 109.46947 * 59.99655 * 12 11 9 39 39 H 1.09004 * 109.46564 * 300.00024 * 12 11 9 40 40 H 1.08998 * 109.46821 * 59.99771 * 13 12 11 41 41 H 1.08999 * 109.46857 * 300.00000 * 13 12 11 42 42 H 1.08996 * 109.47020 * 49.04664 * 15 14 13 43 43 H 1.09002 * 109.47178 * 169.04379 * 15 14 13 44 44 H 0.97006 * 119.99985 * 0.02562 * 18 16 15 45 45 H 0.96994 * 120.00074 * 179.97438 * 22 21 19 46 46 H 1.08998 * 115.54617 * 316.70954 * 27 14 13 47 47 H 1.08998 * 117.49904 * 215.00025 * 28 27 14 48 48 H 1.09001 * 117.49667 * 0.02562 * 28 27 14 49 49 H 1.09008 * 117.49543 * 359.97438 * 29 27 14 50 50 H 1.08991 * 117.50147 * 144.99042 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 8 2.0368 -0.7278 1.1444 5 6 3.3911 -1.0896 0.7966 6 6 3.3193 -1.5055 -0.6894 7 6 2.0678 -0.7739 -1.2240 8 1 2.3406 -0.0839 -2.0225 9 6 1.0443 -1.7665 -1.7124 10 8 0.9168 -2.8329 -1.1490 11 7 0.2710 -1.4691 -2.7754 12 6 -0.7244 -2.4338 -3.2499 13 6 -1.4604 -1.8539 -4.4594 14 7 -2.4580 -2.8214 -4.9355 15 6 -3.3430 -2.2145 -5.9387 16 6 -4.2553 -1.2201 -5.2679 17 8 -4.2366 -1.0977 -4.0614 18 7 -5.0919 -0.4667 -6.0087 19 6 -5.9223 0.4376 -5.3985 20 1 -5.9057 0.5465 -4.3241 21 6 -6.7844 1.2147 -6.1623 22 7 -6.8043 1.0826 -7.4697 23 14 -7.9153 2.4473 -5.3309 24 1 -7.1017 3.4412 -4.5856 25 1 -8.7291 3.1444 -6.3591 26 1 -8.8145 1.7360 -4.3871 27 6 -1.8096 -4.0279 -5.4664 28 6 -1.7988 -5.2733 -4.5777 29 6 -2.7065 -5.2192 -5.8091 30 1 -0.3633 -1.0170 0.1473 31 1 -0.3633 0.6361 0.8072 32 1 -0.3633 0.3809 -0.9544 33 1 3.7296 -1.9255 1.4087 34 1 4.0572 -0.2356 0.9199 35 1 3.1978 -2.5850 -0.7783 36 1 4.2112 -1.1754 -1.2219 37 1 0.3733 -0.6164 -3.2262 38 1 -1.4393 -2.6396 -2.4534 39 1 -0.2251 -3.3589 -3.5381 40 1 -0.7451 -1.6484 -5.2557 41 1 -1.9596 -0.9286 -4.1716 42 1 -2.7425 -1.7056 -6.6926 43 1 -3.9404 -2.9924 -6.4144 44 1 -5.1071 -0.5647 -6.9737 45 1 -7.4064 1.6248 -8.0029 46 1 -0.9399 -3.8541 -6.0999 47 1 -0.9219 -5.9189 -4.6266 48 1 -2.2731 -5.1975 -3.5992 49 1 -3.7776 -5.1078 -5.6402 50 1 -2.4268 -5.8291 -6.6680 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317558742.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:31 Heat of formation + Delta-G solvation = -84.163533 kcal Electronic energy + Delta-G solvation = -30108.225007 eV Core-core repulsion = 25943.498711 eV Total energy + Delta-G solvation = -4164.726296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.73113 -39.11217 -38.37114 -37.44791 -35.21284 -34.08611 -33.41178 -32.66676 -31.72932 -31.25373 -29.39176 -26.87009 -26.06948 -24.19798 -23.16054 -22.35270 -22.25861 -21.84385 -20.45889 -19.85272 -19.07221 -17.86232 -17.55081 -16.76459 -16.27110 -16.04586 -15.88116 -15.74187 -15.43025 -15.18453 -14.74061 -14.48915 -14.31890 -13.99818 -13.81314 -13.62069 -13.29063 -12.96463 -12.68826 -12.54700 -12.44647 -12.39098 -12.16827 -11.81104 -11.53289 -11.48237 -11.39046 -11.32168 -11.25917 -11.22190 -11.16110 -10.92234 -10.46129 -10.34689 -10.23876 -10.14328 -10.08257 -9.73973 -9.49606 -9.02852 -8.49299 -8.00912 -7.95006 -6.43478 -3.84375 2.53754 2.99627 3.18337 3.24375 3.28604 3.61351 3.77957 3.89211 3.94311 4.18497 4.20703 4.40162 4.57761 4.77936 4.85967 4.95490 4.96117 5.00354 5.02461 5.10200 5.13699 5.18795 5.19079 5.23201 5.32959 5.42849 5.48548 5.61537 5.62432 5.67513 5.72708 5.75102 5.79203 5.81379 5.90045 6.05865 6.07486 6.17482 6.20944 6.26530 6.30035 6.41345 6.59043 7.13975 7.33350 7.44842 7.53185 8.04189 8.18370 8.60014 9.16410 9.52683 10.04557 10.74187 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010449 B = 0.002721 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.128241 B =10289.232126 C =12484.505400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.090 3.910 3 H 0.080 0.920 4 O -0.364 6.364 5 C 0.048 3.952 6 C -0.141 4.141 7 C -0.144 4.144 8 H 0.101 0.899 9 C 0.527 3.473 10 O -0.532 6.532 11 N -0.727 5.727 12 C 0.128 3.872 13 C 0.053 3.947 14 N -0.483 5.483 15 C 0.050 3.950 16 C 0.442 3.558 17 O -0.575 6.575 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.001 3.999 28 C -0.162 4.162 29 C -0.171 4.171 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.398 0.602 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.030 0.970 41 H 0.097 0.903 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.102 0.898 49 H 0.101 0.899 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.726 -4.648 4.668 20.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.032 3.968 3 H 0.098 0.902 4 O -0.283 6.283 5 C -0.029 4.029 6 C -0.179 4.179 7 C -0.166 4.166 8 H 0.120 0.880 9 C 0.312 3.688 10 O -0.408 6.408 11 N -0.379 5.379 12 C 0.005 3.995 13 C -0.075 4.075 14 N -0.207 5.207 15 C -0.081 4.081 16 C 0.227 3.773 17 O -0.459 6.459 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.108 4.108 28 C -0.199 4.199 29 C -0.209 4.209 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.232 0.768 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.116 0.884 42 H 0.066 0.934 43 H 0.110 0.890 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.101 0.899 47 H 0.109 0.891 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.088 -5.432 6.334 20.832 hybrid contribution 0.005 1.341 -1.597 2.085 sum 19.093 -4.091 4.737 20.093 Atomic orbital electron populations 1.21962 0.92413 1.04113 1.03132 1.22929 0.95964 0.94643 0.83314 0.90202 1.89258 1.26913 1.74383 1.37750 1.23357 0.84802 0.99835 0.94893 1.22942 0.95984 1.02714 0.96282 1.22809 0.95824 0.97837 1.00124 0.88045 1.20093 0.81581 0.87573 0.79541 1.90711 1.69081 1.24846 1.56169 1.46021 1.38489 1.21135 1.32221 1.21262 0.90060 0.91220 0.96978 1.22229 0.93143 0.96943 0.95230 1.61162 1.18459 1.04783 1.36277 1.21841 0.95456 0.97980 0.92843 1.19764 0.84732 0.84768 0.88049 1.90525 1.71057 1.70342 1.13974 1.41870 1.34527 1.34465 1.09327 1.19634 1.15062 1.13959 0.94151 0.87995 1.25249 0.98442 0.98837 0.95376 1.69603 1.39038 1.41373 1.04367 0.85935 0.79785 0.80115 0.78490 1.19932 1.20994 1.19883 1.22456 0.99178 0.87018 1.02176 1.23069 1.01572 0.98919 0.96386 1.23044 0.98474 1.00058 0.99300 0.90906 0.91282 0.90588 0.88896 0.92259 0.89093 0.90056 0.76778 0.90338 0.91577 0.95191 0.88429 0.93399 0.88986 0.77534 0.91833 0.89860 0.89081 0.87967 0.88056 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 8.56 37.16 0.32 -1.51 16 2 C 0.09 0.91 3.85 -25.96 -0.10 0.81 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 O -0.36 -4.47 11.36 -35.23 -0.40 -4.87 16 5 C 0.05 0.42 7.63 37.93 0.29 0.71 16 6 C -0.14 -1.21 6.59 -25.16 -0.17 -1.37 16 7 C -0.14 -1.34 3.42 -90.20 -0.31 -1.65 16 8 H 0.10 0.64 8.12 -51.93 -0.42 0.22 16 9 C 0.53 6.66 4.78 -10.99 -0.05 6.60 16 10 O -0.53 -8.89 15.75 5.56 0.09 -8.81 16 11 N -0.73 -8.40 5.32 -60.29 -0.32 -8.72 16 12 C 0.13 1.78 5.58 -4.04 -0.02 1.76 16 13 C 0.05 0.77 4.71 -3.83 -0.02 0.75 16 14 N -0.48 -7.64 4.25 -228.09 -0.97 -8.61 16 15 C 0.05 0.85 5.42 -4.97 -0.03 0.83 16 16 C 0.44 10.04 7.31 -10.98 -0.08 9.96 16 17 O -0.58 -15.00 14.64 5.55 0.08 -14.92 16 18 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 19 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 20 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.17 13.05 55.50 0.72 -23.44 16 23 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 27 C 0.00 0.01 4.20 -67.71 -0.28 -0.28 16 28 C -0.16 -1.93 9.71 -26.69 -0.26 -2.19 16 29 C -0.17 -2.00 9.67 -26.69 -0.26 -2.26 16 30 H 0.07 1.04 7.20 -51.93 -0.37 0.67 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.81 7.81 -51.93 -0.41 0.40 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.96 7.04 -51.93 -0.37 0.59 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.40 3.59 8.45 -40.82 -0.35 3.25 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.07 0.92 6.84 -51.93 -0.36 0.56 16 40 H 0.03 0.38 8.11 -51.93 -0.42 -0.04 16 41 H 0.10 1.70 6.42 -51.93 -0.33 1.36 16 42 H 0.05 0.74 8.07 -51.93 -0.42 0.33 16 43 H 0.09 1.47 7.10 -51.93 -0.37 1.10 16 44 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 47 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 49 H 0.10 1.32 7.86 -51.92 -0.41 0.91 16 50 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 404.92 15.07 6.10 6.10 Total: -1.00 -33.37 404.92 -9.26 -42.64 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -8.28 Total: 14.47 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -1.21 Total: 4.37 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.62 Total: -54.75 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.23 Total: -28.59 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.37 -9.26 -42.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317558742.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.528 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds