Wall clock time and date at job start Tue Mar 31 2020 23:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.88151 * 2 1 4 4 C 1.55132 * 111.19072 * 236.07152 * 2 1 3 5 5 N 1.47427 * 104.72081 * 279.18776 * 4 2 1 6 6 C 1.34774 * 125.64611 * 155.81977 * 5 4 2 7 7 O 1.21283 * 119.99646 * 179.69267 * 6 5 4 8 8 C 1.50703 * 120.00140 * 359.69046 * 6 5 4 9 9 C 1.53001 * 109.46988 * 180.02562 * 8 6 5 10 10 O 1.42906 * 112.84870 * 53.80474 * 9 8 6 11 11 C 1.53781 * 113.61341 * 184.99951 * 9 8 6 12 12 C 1.53781 * 87.08070 * 140.06609 * 11 9 8 13 13 C 1.53786 * 87.17350 * 334.52830 * 12 11 9 14 14 C 1.47020 * 108.70399 * 335.55464 * 5 4 2 15 15 C 1.54323 * 107.27098 * 1.28673 * 14 5 4 16 16 H 1.08998 * 110.72147 * 263.65016 * 15 14 5 17 17 N 1.46908 * 110.71990 * 140.55587 * 15 14 5 18 18 C 1.46900 * 110.99809 * 86.45487 * 17 15 14 19 19 C 1.50699 * 109.46941 * 180.02562 * 18 17 15 20 20 O 1.21293 * 119.99864 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00223 * 180.02562 * 19 18 17 22 22 C 1.37092 * 120.00224 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99700 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00219 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00185 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 119.99786 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.46915 * 90.00303 * 26 24 22 28 28 H 1.48503 * 109.47305 * 210.00355 * 26 24 22 29 29 H 1.48499 * 109.47267 * 330.00647 * 26 24 22 30 30 H 1.08997 * 109.47016 * 296.11322 * 1 2 3 31 31 H 1.08999 * 109.47558 * 56.11818 * 1 2 3 32 32 H 1.09003 * 109.47047 * 176.12039 * 1 2 3 33 33 H 1.08997 * 110.49277 * 160.34621 * 4 2 1 34 34 H 1.09001 * 110.34071 * 37.95351 * 4 2 1 35 35 H 1.08999 * 109.46893 * 60.00503 * 8 6 5 36 36 H 1.08998 * 109.46902 * 300.00224 * 8 6 5 37 37 H 0.96701 * 114.00125 * 311.19362 * 10 9 8 38 38 H 1.08999 * 113.61181 * 25.51665 * 11 9 8 39 39 H 1.08998 * 113.61680 * 254.61217 * 11 9 8 40 40 H 1.09002 * 113.61445 * 89.11830 * 12 11 9 41 41 H 1.09002 * 113.61408 * 219.93560 * 12 11 9 42 42 H 1.08992 * 113.61675 * 140.02412 * 13 12 11 43 43 H 1.09000 * 113.60973 * 270.92699 * 13 12 11 44 44 H 1.09007 * 109.88163 * 120.70087 * 14 5 4 45 45 H 1.08998 * 109.88409 * 241.71765 * 14 5 4 46 46 H 1.00903 * 110.99612 * 210.40578 * 17 15 14 47 47 H 1.08994 * 109.47151 * 299.99681 * 18 17 15 48 48 H 1.09001 * 109.47154 * 60.00041 * 18 17 15 49 49 H 0.96998 * 119.99721 * 359.97438 * 21 19 18 50 50 H 0.97004 * 119.99546 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0908 -0.8073 -1.2002 5 7 2.0139 -2.2162 -0.7726 6 6 1.9472 -3.2834 -1.5929 7 8 1.8927 -4.4025 -1.1287 8 6 1.9402 -3.0861 -3.0870 9 6 1.8585 -4.4474 -3.7807 10 8 0.7569 -5.2364 -3.3267 11 6 1.9678 -4.3657 -5.3125 12 6 2.8365 -5.6326 -5.2394 13 6 3.1961 -5.2112 -3.8048 14 6 2.0286 -2.2644 0.6967 15 6 2.0862 -0.8075 1.2024 16 1 3.1130 -0.5165 1.4240 17 7 1.2320 -0.6337 2.3849 18 6 1.9592 -0.9760 3.6146 19 6 1.0528 -0.7864 4.8035 20 8 -0.0867 -0.4034 4.6423 21 7 1.5087 -1.0415 6.0459 22 6 0.6839 -0.8696 7.1274 23 1 -0.3310 -0.5293 6.9838 24 6 1.1537 -1.1331 8.4082 25 7 0.3633 -0.9678 9.4450 26 14 2.9089 -1.7224 8.6564 27 1 3.8033 -0.5509 8.8379 28 1 2.9750 -2.5871 9.8619 29 1 3.3437 -2.4975 7.4667 30 1 -0.3633 0.4523 0.9227 31 1 -0.3634 0.5729 -0.8531 32 1 -0.3633 -1.0253 -0.0695 33 1 3.1252 -0.5270 -1.3986 34 1 1.4764 -0.6456 -2.0858 35 1 2.8552 -2.5776 -3.3906 36 1 1.0779 -2.4823 -3.3697 37 1 0.6829 -5.2916 -2.3641 38 1 2.5068 -3.4865 -5.6654 39 1 1.0186 -4.5162 -5.8266 40 1 2.2636 -6.5584 -5.2919 41 1 3.6848 -5.6203 -5.9237 42 1 3.2378 -6.0438 -3.1027 43 1 4.0703 -4.5628 -3.7464 44 1 1.1219 -2.7476 1.0608 45 1 2.9050 -2.8136 1.0409 46 1 0.8653 0.3052 2.4312 47 1 2.2834 -2.0155 3.5675 48 1 2.8300 -0.3279 3.7141 49 1 2.4201 -1.3475 6.1748 50 1 0.6913 -1.1522 10.3391 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327840810.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:55 Heat of formation + Delta-G solvation = -87.222289 kcal Electronic energy + Delta-G solvation = -29873.770952 eV Core-core repulsion = 25708.912018 eV Total energy + Delta-G solvation = -4164.858933 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.93632 -39.71541 -38.52196 -37.85560 -35.00255 -34.62031 -33.90184 -32.35779 -31.66653 -31.03395 -28.79676 -26.99544 -26.50443 -26.05295 -24.28317 -23.54037 -22.37918 -20.09593 -19.86677 -19.72724 -19.35284 -18.36837 -17.53756 -16.91282 -16.65169 -15.95233 -15.86256 -15.67436 -15.42615 -15.16847 -14.85312 -14.71827 -14.44570 -13.92979 -13.73692 -13.59307 -13.24780 -13.24089 -13.09367 -12.69802 -12.68895 -12.52296 -12.33485 -12.20688 -11.99529 -11.94464 -11.88842 -11.50101 -11.29722 -11.20857 -11.16643 -11.08293 -10.85406 -10.75244 -10.61469 -10.00776 -9.99175 -9.91874 -9.59928 -8.93383 -8.66063 -8.30722 -8.20153 -6.33328 -3.84927 2.28119 2.60209 3.01300 3.04643 3.13659 3.69986 3.79835 3.92647 3.97302 4.08279 4.11095 4.21621 4.31409 4.33589 4.51167 4.67223 4.71331 4.80097 4.90868 4.95096 5.03593 5.09047 5.13543 5.20179 5.26451 5.27458 5.30815 5.41995 5.46342 5.53702 5.59116 5.62583 5.69272 5.71910 5.78240 5.85087 5.89967 5.90827 5.94852 5.99906 6.05323 6.28463 6.97259 7.14504 7.43312 7.54100 7.55316 7.88203 8.11674 8.56744 8.92337 9.39706 9.79093 10.79664 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019646 B = 0.002062 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.917346 B =13574.452055 C =14282.430623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 H 0.091 0.909 4 C 0.102 3.898 5 N -0.611 5.611 6 C 0.531 3.469 7 O -0.542 6.542 8 C -0.158 4.158 9 C 0.128 3.872 10 O -0.548 6.548 11 C -0.128 4.128 12 C -0.135 4.135 13 C -0.162 4.162 14 C 0.113 3.887 15 C 0.077 3.923 16 H 0.060 0.940 17 N -0.654 5.654 18 C 0.045 3.955 19 C 0.449 3.551 20 O -0.564 6.564 21 N -0.589 5.589 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.880 5.880 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.391 0.609 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.357 0.643 47 H 0.087 0.913 48 H 0.047 0.953 49 H 0.370 0.630 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.060 -0.491 -29.135 30.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 H 0.110 0.890 4 C -0.021 4.021 5 N -0.345 5.345 6 C 0.320 3.680 7 O -0.421 6.421 8 C -0.198 4.198 9 C 0.086 3.914 10 O -0.361 6.361 11 C -0.166 4.166 12 C -0.172 4.172 13 C -0.199 4.199 14 C -0.010 4.010 15 C -0.034 4.034 16 H 0.078 0.922 17 N -0.289 5.289 18 C -0.087 4.087 19 C 0.235 3.765 20 O -0.446 6.446 21 N -0.229 5.229 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.520 5.520 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.195 1.195 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.246 0.754 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.179 0.821 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.807 -1.575 -29.446 30.775 hybrid contribution 2.218 0.441 1.257 2.587 sum 11.024 -1.134 -28.190 30.290 Atomic orbital electron populations 1.21622 0.92708 1.02772 1.02273 1.22560 0.97904 0.98701 0.93228 0.89027 1.22500 1.00949 0.80493 0.98165 1.48434 1.72383 1.06325 1.07328 1.20321 0.75780 0.83467 0.88386 1.90584 1.50814 1.23217 1.77490 1.22339 1.05126 1.00631 0.91744 1.21859 0.87674 0.87887 0.93988 1.86337 1.47892 1.71787 1.30055 1.23061 1.01042 0.98913 0.93549 1.22741 0.99541 0.98142 0.96819 1.23616 0.97373 1.01195 0.97761 1.22033 1.03166 0.97097 0.78656 1.22546 0.95569 0.94334 0.90939 0.92183 1.60075 1.35232 1.33932 0.99616 1.21798 0.95057 1.01811 0.90063 1.19649 0.88826 0.84574 0.83442 1.90569 1.19212 1.49932 1.84926 1.42204 1.13529 1.60912 1.06227 1.19426 0.98016 1.42880 0.83088 0.86258 1.25046 0.98217 0.97690 0.95219 1.69622 1.35723 1.47881 0.98772 0.86670 0.84610 0.79399 0.78704 1.19671 1.20133 1.19461 0.90809 0.92945 0.92068 0.91008 0.90146 0.87887 0.88043 0.75417 0.88945 0.90422 0.89776 0.91430 0.90508 0.89954 0.89517 0.91659 0.82108 0.89439 0.93544 0.79693 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.76 37.16 0.33 -0.93 16 2 C -0.10 -0.81 3.46 -88.35 -0.31 -1.11 16 3 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.10 0.66 6.17 -2.41 -0.01 0.65 16 5 N -0.61 -5.85 3.31 -170.38 -0.56 -6.41 16 6 C 0.53 5.61 7.60 -10.99 -0.08 5.52 16 7 O -0.54 -7.56 13.93 -14.26 -0.20 -7.76 16 8 C -0.16 -1.17 4.35 -27.88 -0.12 -1.29 16 9 C 0.13 1.15 1.10 -89.67 -0.10 1.06 16 10 O -0.55 -6.57 13.40 -55.04 -0.74 -7.30 16 11 C -0.13 -0.90 7.47 -25.92 -0.19 -1.09 16 12 C -0.14 -1.01 8.01 -25.92 -0.21 -1.22 16 13 C -0.16 -1.40 7.19 -25.77 -0.19 -1.58 16 14 C 0.11 1.29 6.23 -3.07 -0.02 1.27 16 15 C 0.08 0.78 3.03 -65.88 -0.20 0.58 16 16 H 0.06 0.55 7.89 -51.93 -0.41 0.14 16 17 N -0.65 -9.01 5.12 -106.05 -0.54 -9.55 16 18 C 0.05 0.70 6.02 -4.98 -0.03 0.67 16 19 C 0.45 9.87 7.82 -10.99 -0.09 9.79 16 20 O -0.56 -14.72 15.78 5.55 0.09 -14.63 16 21 N -0.59 -13.80 5.09 -10.96 -0.06 -13.85 16 22 C -0.31 -8.56 10.16 -14.94 -0.15 -8.72 16 23 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -25.60 13.96 55.50 0.77 -24.83 16 26 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16 27 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 28 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 29 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 30 H 0.07 0.81 6.69 -51.93 -0.35 0.46 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.68 7.91 -51.93 -0.41 0.27 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.40 7.40 -51.93 -0.38 0.01 16 35 H 0.10 0.52 8.06 -51.93 -0.42 0.10 16 36 H 0.10 0.63 7.85 -51.93 -0.41 0.23 16 37 H 0.39 4.87 6.18 45.56 0.28 5.15 16 38 H 0.09 0.44 8.10 -51.93 -0.42 0.02 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 44 H 0.09 1.23 8.03 -51.93 -0.42 0.81 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.36 5.02 6.99 -39.29 -0.27 4.74 16 47 H 0.09 1.26 8.13 -51.93 -0.42 0.84 16 48 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 49 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 50 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 397.88 15.07 6.00 6.00 Total: -1.00 -34.06 397.88 -9.06 -43.13 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -7.64 Total: 16.04 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -1.47 Total: 4.64 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.39 Total: -54.64 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.85 Total: -29.69 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.06 -9.06 -43.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327840810.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.094 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds