Wall clock time and date at job start Tue Mar 31 2020 23:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.88220 * 2 1 4 4 C 1.55131 * 110.94061 * 124.07586 * 2 1 3 5 5 N 1.47423 * 104.72226 * 155.29273 * 4 2 1 6 6 C 1.34770 * 125.65081 * 155.82337 * 5 4 2 7 7 O 1.21280 * 120.00593 * 179.69412 * 6 5 4 8 8 C 1.50706 * 120.00022 * 359.68224 * 6 5 4 9 9 C 1.52997 * 109.47220 * 180.02562 * 8 6 5 10 10 O 1.42896 * 112.91057 * 53.75218 * 9 8 6 11 11 C 1.53784 * 113.61270 * 282.49775 * 9 8 6 12 12 C 1.53779 * 87.08045 * 220.02125 * 11 9 8 13 13 C 1.53779 * 87.08402 * 25.43458 * 12 11 9 14 14 C 1.47025 * 108.70128 * 335.54963 * 5 4 2 15 15 C 1.54319 * 107.27185 * 1.29149 * 14 5 4 16 16 H 1.09002 * 110.72090 * 140.55112 * 15 14 5 17 17 N 1.46903 * 110.71979 * 263.82601 * 15 14 5 18 18 C 1.46897 * 110.99779 * 273.54465 * 17 15 14 19 19 C 1.50704 * 109.46714 * 179.97438 * 18 17 15 20 20 O 1.21290 * 119.99894 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99818 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99709 * 180.02562 * 21 19 18 23 23 H 1.07992 * 120.00196 * 359.97438 * 22 21 19 24 24 C 1.38956 * 119.99684 * 180.02562 * 22 21 19 25 25 N 1.31415 * 120.00025 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00047 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46937 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47500 * 119.99504 * 26 24 22 29 29 H 1.48498 * 109.47433 * 239.99839 * 26 24 22 30 30 H 1.09006 * 109.46960 * 183.88316 * 1 2 3 31 31 H 1.09005 * 109.47280 * 303.87659 * 1 2 3 32 32 H 1.08990 * 109.47287 * 63.88260 * 1 2 3 33 33 H 1.08998 * 110.49481 * 36.44899 * 4 2 1 34 34 H 1.08998 * 110.33984 * 274.05626 * 4 2 1 35 35 H 1.09001 * 109.46646 * 60.00393 * 8 6 5 36 36 H 1.08999 * 109.47368 * 300.00806 * 8 6 5 37 37 H 0.96699 * 113.99840 * 311.24594 * 10 9 8 38 38 H 1.09002 * 113.61478 * 334.57090 * 11 9 8 39 39 H 1.09004 * 113.61162 * 105.47268 * 11 9 8 40 40 H 1.09006 * 113.61307 * 270.88660 * 12 11 9 41 41 H 1.08999 * 113.69146 * 139.99146 * 12 11 9 42 42 H 1.08997 * 113.61646 * 220.02209 * 13 12 11 43 43 H 1.09000 * 113.61527 * 89.11480 * 13 12 11 44 44 H 1.09005 * 109.88124 * 120.70762 * 14 5 4 45 45 H 1.08995 * 109.88465 * 241.86828 * 14 5 4 46 46 H 1.00894 * 110.99822 * 37.50352 * 17 15 14 47 47 H 1.08995 * 109.47731 * 299.99526 * 18 17 15 48 48 H 1.09002 * 109.46992 * 60.00328 * 18 17 15 49 49 H 0.97000 * 120.00149 * 0.02562 * 21 19 18 50 50 H 0.96995 * 119.99558 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0844 -0.8118 1.2001 5 7 3.4281 -1.2421 0.7725 6 6 4.4490 -1.5603 1.5928 7 8 5.5141 -1.9082 1.1286 8 6 4.2673 -1.4834 3.0869 9 6 5.5682 -1.8925 3.7805 10 8 6.6991 -1.1462 3.3266 11 6 5.8021 -3.4123 3.8043 12 6 6.3249 -3.2301 5.2389 13 6 5.4528 -1.9656 5.3123 14 6 3.4678 -1.2730 -0.6968 15 6 2.0862 -0.8075 -1.2025 16 1 2.1915 -0.1693 -2.0798 17 7 1.2250 -1.9605 -1.4971 18 6 1.4437 -2.4445 -2.8667 19 6 0.5455 -3.6253 -3.1316 20 8 -0.2034 -4.0241 -2.2648 21 7 0.5745 -4.2383 -4.3316 22 6 -0.2429 -5.3121 -4.5727 23 1 -0.9098 -5.6672 -3.8010 24 6 -0.2126 -5.9444 -5.8097 25 7 0.5992 -5.5126 -6.7486 26 14 -1.3269 -7.4071 -6.1386 27 1 -2.1392 -7.6925 -4.9286 28 1 -2.2274 -7.0972 -7.2780 29 1 -0.4997 -8.5949 -6.4703 30 1 -0.3633 -1.0254 0.0696 31 1 -0.3634 0.5728 0.8532 32 1 -0.3633 0.4523 -0.9226 33 1 1.4538 -1.6784 1.3986 34 1 2.1523 -0.1801 2.0858 35 1 3.4659 -2.1570 3.3904 36 1 4.0105 -0.4626 3.3697 37 1 6.7771 -1.0968 2.3641 38 1 4.8837 -3.9964 3.7450 39 1 6.5644 -3.7477 3.1010 40 1 7.3945 -3.0266 5.2914 41 1 6.0099 -4.0180 5.9232 42 1 5.9332 -1.1332 5.8265 43 1 4.4390 -2.1543 5.6654 44 1 4.2425 -0.5981 -1.0610 45 1 3.6659 -2.2880 -1.0411 46 1 1.3679 -2.6996 -0.8253 47 1 1.2151 -1.6478 -3.5746 48 1 2.4845 -2.7468 -2.9834 49 1 1.1738 -3.9196 -5.0246 50 1 0.6200 -5.9538 -7.6122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327840811.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:59 Heat of formation + Delta-G solvation = -96.872477 kcal Electronic energy + Delta-G solvation = -30021.654181 eV Core-core repulsion = 25856.376784 eV Total energy + Delta-G solvation = -4165.277397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.90823 -39.69065 -38.37259 -37.75205 -34.78890 -34.52438 -33.82940 -32.52107 -31.25641 -31.02213 -28.79756 -26.53009 -26.28970 -25.98901 -24.27064 -23.66883 -22.50746 -20.06209 -19.82534 -19.65887 -19.31358 -17.97091 -17.45125 -16.78767 -16.55612 -16.13174 -15.86791 -15.43978 -15.27330 -15.22587 -14.62243 -14.57925 -14.03700 -13.98818 -13.76271 -13.65786 -13.36695 -13.29227 -12.84577 -12.75427 -12.55120 -12.27821 -12.24977 -12.00034 -11.84777 -11.80253 -11.57564 -11.46586 -11.37036 -11.11454 -11.08495 -10.92913 -10.80288 -10.68976 -10.36979 -10.25677 -9.96420 -9.88381 -9.55453 -8.95718 -8.53481 -8.16010 -7.99918 -6.45040 -3.85968 2.30221 2.65747 3.14029 3.24952 3.31821 3.83713 3.86068 3.93809 4.05004 4.20736 4.26565 4.29580 4.36373 4.46570 4.58357 4.70530 4.83408 4.99182 5.03563 5.08180 5.09463 5.15705 5.21835 5.23540 5.33765 5.37955 5.43745 5.48521 5.52847 5.61334 5.64947 5.67246 5.76415 5.84871 5.87270 5.92172 5.97791 6.00166 6.06184 6.10479 6.21808 6.50497 7.07992 7.17058 7.49079 7.52318 7.55382 7.89415 8.02612 8.56998 9.14380 9.50371 10.01123 10.72663 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014631 B = 0.002220 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.261229 B =12606.837834 C =13549.003678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 H 0.085 0.915 4 C 0.097 3.903 5 N -0.612 5.612 6 C 0.531 3.469 7 O -0.545 6.545 8 C -0.159 4.159 9 C 0.128 3.872 10 O -0.549 6.549 11 C -0.162 4.162 12 C -0.135 4.135 13 C -0.128 4.128 14 C 0.074 3.926 15 C 0.078 3.922 16 H 0.100 0.900 17 N -0.650 5.650 18 C 0.048 3.952 19 C 0.440 3.560 20 O -0.584 6.584 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.389 0.611 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.351 0.649 47 H 0.088 0.912 48 H 0.044 0.956 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.359 12.647 18.817 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.112 4.112 3 H 0.103 0.897 4 C -0.026 4.026 5 N -0.346 5.346 6 C 0.321 3.679 7 O -0.425 6.425 8 C -0.199 4.199 9 C 0.086 3.914 10 O -0.361 6.361 11 C -0.200 4.200 12 C -0.172 4.172 13 C -0.165 4.165 14 C -0.051 4.051 15 C -0.034 4.034 16 H 0.118 0.882 17 N -0.282 5.282 18 C -0.084 4.084 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.244 0.756 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.171 0.829 47 H 0.107 0.893 48 H 0.062 0.938 49 H 0.226 0.774 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.050 12.529 19.436 24.175 hybrid contribution 0.593 -1.044 -1.386 1.834 sum 7.644 11.485 18.049 22.718 Atomic orbital electron populations 1.21492 0.92275 1.03619 1.01128 1.22425 0.97793 0.97980 0.92959 0.89704 1.22639 0.82682 0.98991 0.98242 1.48506 1.12578 1.66466 1.07014 1.20364 0.82802 0.76267 0.88508 1.90568 1.26156 1.48184 1.77568 1.22343 1.00915 1.04944 0.91651 1.21817 0.84268 0.91311 0.94039 1.86327 1.45670 1.74240 1.29873 1.23580 1.02102 0.96582 0.97710 1.22740 1.00141 0.97457 0.96900 1.23064 1.00925 0.99089 0.93429 1.22881 0.99844 1.02264 0.80101 1.22726 0.88274 0.94033 0.98325 0.88157 1.60129 1.54348 1.10168 1.03541 1.21735 0.97785 0.97872 0.91045 1.19756 0.87345 0.86227 0.84085 1.90521 1.43377 1.67508 1.45428 1.41873 1.37330 1.28588 1.12138 1.19742 1.17881 1.06185 0.99045 0.87865 1.25277 0.97870 0.99461 0.95371 1.69619 1.37638 1.41814 1.05129 0.85799 0.79557 0.80457 0.78527 1.19214 1.20710 1.20756 0.90480 0.93593 0.92050 0.90354 0.90554 0.87645 0.88118 0.75613 0.89760 0.90543 0.89845 0.91338 0.90500 0.88849 0.90956 0.91131 0.82882 0.89340 0.93768 0.77450 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 8.86 37.16 0.33 -0.87 16 2 C -0.09 -0.79 3.57 -88.35 -0.32 -1.10 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.10 0.80 6.06 -2.41 -0.01 0.78 16 5 N -0.61 -6.35 3.32 -170.38 -0.57 -6.91 16 6 C 0.53 6.00 7.60 -10.99 -0.08 5.92 16 7 O -0.55 -7.82 13.93 -14.25 -0.20 -8.02 16 8 C -0.16 -1.32 4.35 -27.88 -0.12 -1.44 16 9 C 0.13 1.24 1.10 -89.80 -0.10 1.15 16 10 O -0.55 -6.63 13.40 -55.04 -0.74 -7.37 16 11 C -0.16 -1.60 7.16 -25.92 -0.19 -1.78 16 12 C -0.14 -1.13 8.02 -25.92 -0.21 -1.34 16 13 C -0.13 -0.99 7.47 -25.92 -0.19 -1.19 16 14 C 0.07 0.82 6.32 -3.07 -0.02 0.80 16 15 C 0.08 0.82 3.02 -65.88 -0.20 0.62 16 16 H 0.10 0.97 7.90 -51.93 -0.41 0.56 16 17 N -0.65 -9.18 4.52 -106.06 -0.48 -9.66 16 18 C 0.05 0.78 5.99 -4.98 -0.03 0.75 16 19 C 0.44 10.00 7.82 -10.98 -0.09 9.91 16 20 O -0.58 -15.27 15.78 5.55 0.09 -15.18 16 21 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 22 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 25 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 26 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 H 0.08 0.90 7.36 -51.93 -0.38 0.52 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.69 7.99 -51.93 -0.41 0.27 16 34 H 0.08 0.47 7.48 -51.93 -0.39 0.08 16 35 H 0.11 0.71 8.05 -51.93 -0.42 0.29 16 36 H 0.10 0.69 7.85 -51.93 -0.41 0.28 16 37 H 0.39 4.79 6.18 45.56 0.28 5.08 16 38 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.54 8.10 -51.93 -0.42 0.12 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 46 H 0.35 5.42 8.11 -39.29 -0.32 5.10 16 47 H 0.09 1.31 8.09 -51.93 -0.42 0.89 16 48 H 0.04 0.67 7.82 -51.93 -0.41 0.26 16 49 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 50 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 401.83 15.07 6.06 6.06 Total: -1.00 -32.14 401.83 -9.40 -41.54 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -7.74 Total: 16.99 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -1.47 Total: 4.33 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.38 Total: -54.21 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.85 Total: -30.57 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.14 -9.40 -41.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327840811.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.331 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds