Wall clock time and date at job start Tue Mar 31 2020 23:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.88220 * 2 1 4 4 C 1.55131 * 110.94061 * 124.07586 * 2 1 3 5 5 N 1.47423 * 104.72226 * 155.29273 * 4 2 1 6 6 C 1.34770 * 125.65081 * 155.82337 * 5 4 2 7 7 O 1.21280 * 120.00593 * 179.69412 * 6 5 4 8 8 C 1.50706 * 120.00022 * 359.68224 * 6 5 4 9 9 C 1.52997 * 109.47220 * 180.02562 * 8 6 5 10 10 O 1.42896 * 112.91057 * 53.75218 * 9 8 6 11 11 C 1.53784 * 113.61270 * 282.49775 * 9 8 6 12 12 C 1.53779 * 87.08045 * 220.02125 * 11 9 8 13 13 C 1.53779 * 87.08402 * 25.43458 * 12 11 9 14 14 C 1.47025 * 108.70128 * 335.54963 * 5 4 2 15 15 C 1.54319 * 107.27185 * 1.29149 * 14 5 4 16 16 H 1.09002 * 110.72090 * 140.55112 * 15 14 5 17 17 N 1.46903 * 110.71979 * 263.82601 * 15 14 5 18 18 C 1.46897 * 110.99779 * 273.54465 * 17 15 14 19 19 C 1.50704 * 109.46714 * 179.97438 * 18 17 15 20 20 O 1.21290 * 119.99894 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99818 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99709 * 180.02562 * 21 19 18 23 23 H 1.07992 * 120.00196 * 359.97438 * 22 21 19 24 24 C 1.38956 * 119.99684 * 180.02562 * 22 21 19 25 25 N 1.31415 * 120.00025 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00047 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46937 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47500 * 119.99504 * 26 24 22 29 29 H 1.48498 * 109.47433 * 239.99839 * 26 24 22 30 30 H 1.09006 * 109.46960 * 183.88316 * 1 2 3 31 31 H 1.09005 * 109.47280 * 303.87659 * 1 2 3 32 32 H 1.08990 * 109.47287 * 63.88260 * 1 2 3 33 33 H 1.08998 * 110.49481 * 36.44899 * 4 2 1 34 34 H 1.08998 * 110.33984 * 274.05626 * 4 2 1 35 35 H 1.09001 * 109.46646 * 60.00393 * 8 6 5 36 36 H 1.08999 * 109.47368 * 300.00806 * 8 6 5 37 37 H 0.96699 * 113.99840 * 311.24594 * 10 9 8 38 38 H 1.09002 * 113.61478 * 334.57090 * 11 9 8 39 39 H 1.09004 * 113.61162 * 105.47268 * 11 9 8 40 40 H 1.09006 * 113.61307 * 270.88660 * 12 11 9 41 41 H 1.08999 * 113.69146 * 139.99146 * 12 11 9 42 42 H 1.08997 * 113.61646 * 220.02209 * 13 12 11 43 43 H 1.09000 * 113.61527 * 89.11480 * 13 12 11 44 44 H 1.09005 * 109.88124 * 120.70762 * 14 5 4 45 45 H 1.08995 * 109.88465 * 241.86828 * 14 5 4 46 46 H 1.00894 * 110.99822 * 37.50352 * 17 15 14 47 47 H 1.08995 * 109.47731 * 299.99526 * 18 17 15 48 48 H 1.09002 * 109.46992 * 60.00328 * 18 17 15 49 49 H 0.97000 * 120.00149 * 0.02562 * 21 19 18 50 50 H 0.96995 * 119.99558 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0844 -0.8118 1.2001 5 7 3.4281 -1.2421 0.7725 6 6 4.4490 -1.5603 1.5928 7 8 5.5141 -1.9082 1.1286 8 6 4.2673 -1.4834 3.0869 9 6 5.5682 -1.8925 3.7805 10 8 6.6991 -1.1462 3.3266 11 6 5.8021 -3.4123 3.8043 12 6 6.3249 -3.2301 5.2389 13 6 5.4528 -1.9656 5.3123 14 6 3.4678 -1.2730 -0.6968 15 6 2.0862 -0.8075 -1.2025 16 1 2.1915 -0.1693 -2.0798 17 7 1.2250 -1.9605 -1.4971 18 6 1.4437 -2.4445 -2.8667 19 6 0.5455 -3.6253 -3.1316 20 8 -0.2034 -4.0241 -2.2648 21 7 0.5745 -4.2383 -4.3316 22 6 -0.2429 -5.3121 -4.5727 23 1 -0.9098 -5.6672 -3.8010 24 6 -0.2126 -5.9444 -5.8097 25 7 0.5992 -5.5126 -6.7486 26 14 -1.3269 -7.4071 -6.1386 27 1 -2.1392 -7.6925 -4.9286 28 1 -2.2274 -7.0972 -7.2780 29 1 -0.4997 -8.5949 -6.4703 30 1 -0.3633 -1.0254 0.0696 31 1 -0.3634 0.5728 0.8532 32 1 -0.3633 0.4523 -0.9226 33 1 1.4538 -1.6784 1.3986 34 1 2.1523 -0.1801 2.0858 35 1 3.4659 -2.1570 3.3904 36 1 4.0105 -0.4626 3.3697 37 1 6.7771 -1.0968 2.3641 38 1 4.8837 -3.9964 3.7450 39 1 6.5644 -3.7477 3.1010 40 1 7.3945 -3.0266 5.2914 41 1 6.0099 -4.0180 5.9232 42 1 5.9332 -1.1332 5.8265 43 1 4.4390 -2.1543 5.6654 44 1 4.2425 -0.5981 -1.0610 45 1 3.6659 -2.2880 -1.0411 46 1 1.3679 -2.6996 -0.8253 47 1 1.2151 -1.6478 -3.5746 48 1 2.4845 -2.7468 -2.9834 49 1 1.1738 -3.9196 -5.0246 50 1 0.6200 -5.9538 -7.6122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327840811.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:58 Heat of formation + Delta-G solvation = -120.217156 kcal Electronic energy + Delta-G solvation = -30022.666482 eV Core-core repulsion = 25856.376784 eV Total energy + Delta-G solvation = -4166.289698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72477 -40.58170 -39.94093 -38.80500 -36.14801 -35.57570 -35.32667 -33.47310 -33.18856 -31.80523 -29.80052 -27.82534 -27.25497 -26.67509 -25.82035 -24.59994 -23.30212 -21.19032 -20.82122 -20.56315 -20.43080 -19.93652 -18.31030 -17.84765 -17.49436 -17.36020 -16.89175 -16.67093 -16.37855 -16.18609 -16.00671 -15.74117 -15.44832 -15.23462 -14.94545 -14.54823 -14.32962 -14.15127 -13.97178 -13.65361 -13.56245 -13.51160 -13.28975 -13.21277 -13.04187 -12.87630 -12.83277 -12.56114 -12.41774 -12.24867 -12.14427 -12.12160 -11.80215 -11.70398 -11.58111 -11.52135 -11.43044 -10.79640 -10.63983 -10.35085 -10.02455 -9.80422 -9.34952 -8.47942 -5.96482 1.35566 1.40976 1.46677 1.54956 1.86992 2.04571 2.27697 2.85254 3.11513 3.19502 3.26251 3.48286 3.48468 3.60411 3.67243 3.70963 3.89761 4.01362 4.10134 4.21392 4.28232 4.34594 4.37237 4.45536 4.47603 4.55882 4.59036 4.66062 4.69838 4.76524 4.76991 4.81987 4.82753 4.98168 5.02738 5.10269 5.13911 5.24381 5.28758 5.32132 5.40211 5.41900 5.72347 5.87009 6.07417 6.29480 6.37829 6.58610 6.68589 7.04975 7.11654 7.55459 8.10199 8.69683 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014631 B = 0.002220 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.261229 B =12606.837834 C =13549.003678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.108 0.892 4 C 0.096 3.904 5 N -0.612 5.612 6 C 0.523 3.477 7 O -0.584 6.584 8 C -0.149 4.149 9 C 0.114 3.886 10 O -0.565 6.565 11 C -0.170 4.170 12 C -0.135 4.135 13 C -0.116 4.116 14 C 0.076 3.924 15 C 0.080 3.920 16 H 0.115 0.885 17 N -0.655 5.655 18 C 0.063 3.937 19 C 0.439 3.561 20 O -0.621 6.621 21 N -0.575 5.575 22 C -0.331 4.331 23 H 0.079 0.921 24 C -0.015 4.015 25 N -0.921 5.921 26 Si 0.992 3.008 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.384 0.616 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.122 0.878 44 H 0.076 0.924 45 H 0.044 0.956 46 H 0.342 0.658 47 H 0.111 0.889 48 H 0.059 0.941 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.595 14.060 20.119 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.126 0.874 4 C -0.025 4.025 5 N -0.344 5.344 6 C 0.314 3.686 7 O -0.467 6.467 8 C -0.189 4.189 9 C 0.072 3.928 10 O -0.377 6.377 11 C -0.208 4.208 12 C -0.172 4.172 13 C -0.153 4.153 14 C -0.049 4.049 15 C -0.031 4.031 16 H 0.133 0.867 17 N -0.285 5.285 18 C -0.069 4.069 19 C 0.226 3.774 20 O -0.507 6.507 21 N -0.212 5.212 22 C -0.461 4.461 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.816 3.184 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.198 1.198 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.238 0.762 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.140 0.860 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.161 0.839 47 H 0.129 0.871 48 H 0.077 0.923 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.283 13.977 20.742 25.788 hybrid contribution 0.855 -1.467 -1.762 2.447 sum 7.137 12.510 18.980 23.826 Atomic orbital electron populations 1.21413 0.92736 1.02140 1.01692 1.22433 0.97200 0.98763 0.91764 0.87359 1.22783 0.81222 0.99268 0.99272 1.48593 1.13255 1.65970 1.06559 1.20976 0.82289 0.75513 0.89832 1.90556 1.27771 1.49912 1.78414 1.22360 1.00652 1.06862 0.88991 1.22113 0.84282 0.90735 0.95653 1.86307 1.47164 1.74710 1.29523 1.23634 1.01806 0.97212 0.98104 1.22736 0.99688 0.98624 0.96157 1.23104 1.02247 0.98363 0.91569 1.22768 1.00251 1.00816 0.81043 1.22836 0.87439 0.92860 0.99952 0.86743 1.60168 1.55718 1.10627 1.02006 1.21590 0.96695 0.95643 0.93011 1.20856 0.86946 0.86860 0.82699 1.90490 1.45040 1.68853 1.46353 1.41957 1.37509 1.28634 1.13121 1.19685 1.19065 1.08041 0.99265 0.90283 1.26049 0.98990 1.01661 0.94734 1.69679 1.38328 1.42747 1.05455 0.84876 0.77874 0.77395 0.78239 1.19707 1.19549 1.19780 0.93176 0.91347 0.92931 0.90957 0.87340 0.85485 0.85728 0.76163 0.88854 0.93386 0.91125 0.89677 0.90516 0.86028 0.90599 0.93743 0.83941 0.87132 0.92329 0.77036 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 8.86 71.98 0.64 -1.38 16 2 C -0.08 -1.17 3.57 -9.33 -0.03 -1.20 16 3 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 4 C 0.10 1.31 6.06 86.93 0.53 1.83 16 5 N -0.61 -11.69 3.32 -811.36 -2.70 -14.39 16 6 C 0.52 11.27 7.60 87.66 0.67 11.93 16 7 O -0.58 -17.08 13.93 15.92 0.22 -16.86 16 8 C -0.15 -2.12 4.35 29.85 0.13 -1.99 16 9 C 0.11 2.07 1.10 -10.27 -0.01 2.06 16 10 O -0.57 -13.67 13.40 -130.04 -1.74 -15.41 16 11 C -0.17 -3.30 7.16 31.12 0.22 -3.08 16 12 C -0.13 -2.11 8.02 31.12 0.25 -1.86 16 13 C -0.12 -1.52 7.47 31.12 0.23 -1.28 16 14 C 0.08 1.63 6.32 86.73 0.55 2.18 16 15 C 0.08 1.54 3.02 46.10 0.14 1.68 16 16 H 0.11 1.92 7.90 -2.39 -0.02 1.90 16 17 N -0.65 -18.05 4.52 -489.45 -2.21 -20.26 16 18 C 0.06 2.02 5.99 85.56 0.51 2.53 16 19 C 0.44 20.27 7.82 87.66 0.69 20.95 16 20 O -0.62 -33.35 15.78 -3.06 -0.05 -33.40 16 21 N -0.57 -29.17 5.29 -306.98 -1.62 -30.79 16 22 C -0.33 -18.69 9.68 84.04 0.81 -17.87 16 23 H 0.08 4.77 7.16 -2.91 -0.02 4.74 16 24 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 25 N -0.92 -49.72 13.05 21.67 0.28 -49.44 16 26 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 29 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 30 H 0.05 1.12 7.36 -2.38 -0.02 1.10 16 31 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.12 7.99 -2.39 -0.02 1.10 16 34 H 0.11 0.83 7.48 -2.39 -0.02 0.81 16 35 H 0.13 1.27 8.05 -2.39 -0.02 1.25 16 36 H 0.12 1.20 7.85 -2.39 -0.02 1.18 16 37 H 0.38 9.83 6.18 -74.06 -0.46 9.37 16 38 H 0.09 1.60 8.04 -2.39 -0.02 1.58 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.12 0.91 8.10 -2.39 -0.02 0.90 16 44 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 45 H 0.04 1.19 7.68 -2.39 -0.02 1.17 16 46 H 0.34 10.58 8.11 -89.70 -0.73 9.85 16 47 H 0.11 3.10 8.09 -2.39 -0.02 3.08 16 48 H 0.06 1.74 7.82 -2.39 -0.02 1.72 16 49 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 50 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -72.48 401.83 -0.96 -73.44 By element: Atomic # 1 Polarization: 48.97 SS G_CDS: -0.95 Total: 48.02 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 5.79 Total: 14.17 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -6.25 Total: -114.88 kcal Atomic # 8 Polarization: -64.10 SS G_CDS: -1.57 Total: -65.66 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -72.48 -0.96 -73.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327840811.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.781 kcal (2) G-P(sol) polarization free energy of solvation -72.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds