Wall clock time and date at job start Tue Mar 31 2020 23:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20756 * 120.00135 * 2 1 4 4 C 1.50699 * 119.99837 * 179.97438 * 2 1 3 5 5 C 1.53011 * 109.47011 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47076 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47186 * 179.97438 * 6 5 4 8 8 O 1.21285 * 119.99794 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00365 * 180.02562 * 7 6 5 10 10 C 1.47422 * 125.64527 * 0.03003 * 9 7 6 11 11 C 1.54917 * 104.83074 * 204.09182 * 10 9 7 12 12 C 1.55158 * 101.57978 * 322.98980 * 11 10 9 13 13 H 1.08999 * 110.71744 * 276.95811 * 12 11 10 14 14 N 1.46893 * 110.71784 * 153.86695 * 12 11 10 15 15 C 1.46901 * 111.00564 * 86.45212 * 14 12 11 16 16 C 1.50696 * 109.47633 * 179.97438 * 15 14 12 17 17 O 1.21286 * 119.99756 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99978 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99858 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99853 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99815 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99983 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99855 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47233 * 59.99745 * 23 21 19 25 25 H 1.48504 * 109.47223 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47073 * 299.99540 * 23 21 19 27 27 C 1.47020 * 125.65281 * 179.97438 * 9 7 6 28 28 H 1.09001 * 110.01030 * 59.48666 * 27 9 7 29 29 C 1.53004 * 109.88140 * 298.39514 * 27 9 7 30 30 H 1.09001 * 109.47900 * 240.00309 * 1 2 3 31 31 H 1.08999 * 109.47006 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46828 * 120.00525 * 1 2 3 33 33 H 1.08995 * 109.47172 * 60.00964 * 4 2 1 34 34 H 1.08993 * 109.47719 * 300.00591 * 4 2 1 35 35 H 1.08995 * 109.46730 * 60.00248 * 5 4 2 36 36 H 1.08993 * 109.46997 * 300.00587 * 5 4 2 37 37 H 1.09004 * 109.46897 * 59.99969 * 6 5 4 38 38 H 1.08993 * 109.47602 * 300.00113 * 6 5 4 39 39 H 1.08998 * 110.36873 * 85.25268 * 10 9 7 40 40 H 1.09005 * 110.36491 * 322.92676 * 10 9 7 41 41 H 1.08998 * 111.00524 * 81.06438 * 11 10 9 42 42 H 1.08996 * 111.00376 * 204.87436 * 11 10 9 43 43 H 1.00897 * 111.00064 * 210.40608 * 14 12 11 44 44 H 1.09004 * 109.46860 * 300.00296 * 15 14 12 45 45 H 1.09007 * 109.46949 * 59.99463 * 15 14 12 46 46 H 0.97001 * 120.00243 * 359.97438 * 18 16 15 47 47 H 0.97004 * 119.99266 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.46946 * 302.19386 * 29 27 9 49 49 H 1.09003 * 109.47334 * 62.19032 * 29 27 9 50 50 H 1.08992 * 109.47141 * 182.18813 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 6 3.7648 -1.0255 0.0011 6 6 4.5297 -2.3505 0.0011 7 6 6.0114 -2.0752 0.0009 8 8 6.4156 -0.9317 0.0014 9 7 6.8872 -3.0996 0.0003 10 6 6.5350 -4.5311 -0.0008 11 6 7.7676 -5.2433 0.6102 12 6 8.9340 -4.4036 0.0256 13 1 9.1841 -4.7392 -0.9808 14 7 10.1116 -4.4696 0.9011 15 6 10.9386 -5.6415 0.5839 16 6 12.1347 -5.6752 1.4999 17 8 12.2839 -4.8080 2.3346 18 7 13.0391 -6.6685 1.3910 19 6 14.1276 -6.6988 2.2240 20 1 14.2605 -5.9266 2.9672 21 6 15.0598 -7.7231 2.1120 22 7 14.8978 -8.6631 1.2080 23 14 16.5425 -7.7648 3.2475 24 1 16.0841 -7.8494 4.6573 25 1 17.3781 -8.9500 2.9272 26 1 17.3438 -6.5287 3.0608 27 6 8.3521 -2.9745 -0.0004 28 1 8.6799 -2.4248 0.8819 29 6 8.8117 -2.2484 -1.2662 30 1 -0.3635 -0.5138 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.9972 -1.8770 -0.8892 34 1 1.9971 -1.8764 0.8907 35 1 4.0277 -0.4538 0.8911 36 1 4.0284 -0.4541 -0.8888 37 1 4.2666 -2.9219 -0.8892 38 1 4.2662 -2.9223 0.8907 39 1 6.3624 -4.8785 -1.0195 40 1 5.6524 -4.7051 0.6149 41 1 7.7522 -5.1860 1.6986 42 1 7.8255 -6.2792 0.2764 43 1 10.6523 -3.6196 0.8446 44 1 10.3502 -6.5490 0.7204 45 1 11.2754 -5.5792 -0.4509 46 1 12.9200 -7.3619 0.7232 47 1 15.5484 -9.3783 1.1302 48 1 8.4650 -2.7936 -2.1440 49 1 8.3972 -1.2403 -1.2777 50 1 9.9002 -2.1937 -1.2788 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331849569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:51 Heat of formation + Delta-G solvation = -118.724698 kcal Electronic energy + Delta-G solvation = -28738.920118 eV Core-core repulsion = 24572.695138 eV Total energy + Delta-G solvation = -4166.224980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.53284 -39.83147 -38.50560 -37.77934 -34.76381 -34.66203 -33.80297 -31.76729 -31.25587 -31.15818 -30.60161 -28.19444 -26.94558 -25.04634 -23.79873 -23.57912 -22.08857 -20.55811 -20.02855 -19.40869 -18.88985 -17.89270 -17.23084 -16.83531 -16.43237 -16.16714 -16.05027 -15.43318 -15.32374 -15.24702 -14.68458 -14.54727 -14.25149 -13.90552 -13.88246 -13.67751 -13.27341 -13.25508 -13.05495 -12.91525 -12.73486 -12.46680 -12.32216 -12.31401 -12.11242 -11.84049 -11.78290 -11.74112 -11.54365 -11.39830 -11.17153 -11.10404 -10.97887 -10.73077 -10.44973 -10.22586 -10.13236 -9.83187 -9.51385 -8.82480 -8.49896 -8.15355 -7.97787 -6.43124 -3.83960 1.56262 2.49021 2.70493 3.19601 3.25344 3.29930 3.60497 3.88796 4.03970 4.11791 4.27488 4.41157 4.44686 4.54469 4.56098 4.67361 4.80764 4.84266 4.94478 4.95786 5.02596 5.08180 5.09902 5.15937 5.19190 5.20795 5.26270 5.29706 5.36034 5.45640 5.56157 5.56826 5.72815 5.74732 5.81000 5.91270 5.96380 5.99167 6.05537 6.12175 6.23311 6.26492 7.11355 7.15351 7.35141 7.53909 7.56220 8.02715 8.04566 8.59584 9.16459 9.52411 10.03876 10.74457 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036616 B = 0.001546 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.507639 B =18111.321925 C =18257.632922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.349 3.651 3 O -0.452 6.452 4 C -0.173 4.173 5 C -0.098 4.098 6 C -0.135 4.135 7 C 0.526 3.474 8 O -0.536 6.536 9 N -0.613 5.613 10 C 0.099 3.901 11 C -0.125 4.125 12 C 0.078 3.922 13 H 0.060 0.940 14 N -0.657 5.657 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.134 3.866 28 H 0.088 0.912 29 C -0.164 4.164 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.353 0.647 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.236 6.003 -7.946 29.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.225 3.775 3 O -0.326 6.326 4 C -0.211 4.211 5 C -0.136 4.136 6 C -0.175 4.175 7 C 0.315 3.685 8 O -0.412 6.412 9 N -0.348 5.348 10 C -0.024 4.024 11 C -0.164 4.164 12 C -0.033 4.033 13 H 0.078 0.922 14 N -0.290 5.290 15 C -0.081 4.081 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C 0.031 3.969 28 H 0.106 0.894 29 C -0.222 4.222 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.173 0.827 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.090 0.910 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -27.842 7.357 -6.913 29.616 hybrid contribution 1.033 -0.663 -0.762 1.445 sum -26.809 6.694 -7.675 28.679 Atomic orbital electron populations 1.22337 0.94518 1.04975 1.04488 1.24639 0.91939 0.90407 0.70562 1.90462 1.71982 1.35171 1.34948 1.22162 0.96537 0.97608 1.04756 1.21164 0.91608 0.95896 1.04931 1.21659 0.91523 1.00004 1.04316 1.20335 0.88100 0.83977 0.76075 1.90727 1.80068 1.20806 1.49605 1.48536 1.06417 1.06426 1.73447 1.22387 0.98883 0.80264 1.00864 1.22886 0.92339 0.98800 1.02353 1.22609 0.91964 0.93630 0.95104 0.92212 1.60149 1.09107 1.06327 1.53425 1.21708 0.94490 0.94707 0.97164 1.19777 0.85114 0.84868 0.87726 1.90534 1.77468 1.39756 1.38881 1.41846 1.21058 1.23681 1.33350 1.19664 0.99109 1.10148 1.14097 0.87959 1.25252 0.99467 0.95440 0.97670 1.69606 1.37285 1.13311 1.34118 0.85918 0.80556 0.77627 0.80130 1.19877 1.20971 1.19906 1.21625 0.79676 0.96167 0.99448 0.89440 1.22163 1.01563 1.01782 0.96672 0.88981 0.90107 0.89022 0.88308 0.88248 0.90509 0.90605 0.88941 0.88814 0.91326 0.90403 0.89169 0.89904 0.82681 0.89518 0.93727 0.77470 0.91825 0.92673 0.91017 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.68 10.26 36.00 0.37 -0.31 16 2 C 0.35 2.32 7.27 -29.04 -0.21 2.11 16 3 O -0.45 -5.25 16.71 6.00 0.10 -5.14 16 4 C -0.17 -0.78 5.64 -27.88 -0.16 -0.94 16 5 C -0.10 -0.80 3.79 -26.73 -0.10 -0.90 16 6 C -0.14 -0.93 4.71 -27.89 -0.13 -1.07 16 7 C 0.53 6.03 7.64 -10.99 -0.08 5.94 16 8 O -0.54 -8.39 15.03 5.55 0.08 -8.30 16 9 N -0.61 -6.47 3.06 -163.02 -0.50 -6.97 16 10 C 0.10 0.75 6.69 -2.53 -0.02 0.73 16 11 C -0.13 -1.20 6.71 -24.58 -0.16 -1.37 16 12 C 0.08 0.91 2.76 -65.89 -0.18 0.72 16 13 H 0.06 0.65 7.61 -51.93 -0.40 0.26 16 14 N -0.66 -10.13 5.93 -106.06 -0.63 -10.76 16 15 C 0.05 0.87 6.02 -4.98 -0.03 0.84 16 16 C 0.44 10.18 7.82 -10.99 -0.09 10.10 16 17 O -0.58 -15.69 15.78 5.55 0.09 -15.60 16 18 N -0.56 -14.04 5.29 -10.97 -0.06 -14.10 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 23 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.13 1.62 2.99 -66.96 -0.20 1.42 16 28 H 0.09 1.26 7.97 -51.93 -0.41 0.84 16 29 C -0.16 -1.90 9.10 37.16 0.34 -1.56 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.08 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 33 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 36 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.47 7.85 -51.93 -0.41 0.07 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.43 7.48 -51.93 -0.39 0.04 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.35 5.78 8.14 -39.29 -0.32 5.46 16 44 H 0.09 1.32 8.13 -51.93 -0.42 0.89 16 45 H 0.04 0.67 8.09 -51.92 -0.42 0.25 16 46 H 0.39 9.30 7.90 -40.82 -0.32 8.97 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.96 6.90 -51.93 -0.36 0.60 16 50 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 413.48 15.07 6.23 6.23 Total: -1.00 -35.78 413.48 -8.33 -44.11 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -8.44 Total: 10.37 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -0.90 Total: 7.77 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.46 Total: -55.35 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: 0.27 Total: -29.05 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.78 -8.33 -44.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331849569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.617 kcal (2) G-P(sol) polarization free energy of solvation -35.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds