Wall clock time and date at job start Tue Mar 31 2020 23:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20756 * 120.00135 * 2 1 4 4 C 1.50699 * 119.99837 * 179.97438 * 2 1 3 5 5 C 1.53011 * 109.47011 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47076 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47186 * 179.97438 * 6 5 4 8 8 O 1.21285 * 119.99794 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00365 * 180.02562 * 7 6 5 10 10 C 1.47422 * 125.64527 * 0.03003 * 9 7 6 11 11 C 1.54917 * 104.83074 * 204.09182 * 10 9 7 12 12 C 1.55158 * 101.57978 * 322.98980 * 11 10 9 13 13 H 1.08999 * 110.71744 * 276.95811 * 12 11 10 14 14 N 1.46893 * 110.71784 * 153.86695 * 12 11 10 15 15 C 1.46901 * 111.00564 * 86.45212 * 14 12 11 16 16 C 1.50696 * 109.47633 * 179.97438 * 15 14 12 17 17 O 1.21286 * 119.99756 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99978 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99858 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99853 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99815 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99983 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99855 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47233 * 59.99745 * 23 21 19 25 25 H 1.48504 * 109.47223 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47073 * 299.99540 * 23 21 19 27 27 C 1.47020 * 125.65281 * 179.97438 * 9 7 6 28 28 H 1.09001 * 110.01030 * 59.48666 * 27 9 7 29 29 C 1.53004 * 109.88140 * 298.39514 * 27 9 7 30 30 H 1.09001 * 109.47900 * 240.00309 * 1 2 3 31 31 H 1.08999 * 109.47006 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46828 * 120.00525 * 1 2 3 33 33 H 1.08995 * 109.47172 * 60.00964 * 4 2 1 34 34 H 1.08993 * 109.47719 * 300.00591 * 4 2 1 35 35 H 1.08995 * 109.46730 * 60.00248 * 5 4 2 36 36 H 1.08993 * 109.46997 * 300.00587 * 5 4 2 37 37 H 1.09004 * 109.46897 * 59.99969 * 6 5 4 38 38 H 1.08993 * 109.47602 * 300.00113 * 6 5 4 39 39 H 1.08998 * 110.36873 * 85.25268 * 10 9 7 40 40 H 1.09005 * 110.36491 * 322.92676 * 10 9 7 41 41 H 1.08998 * 111.00524 * 81.06438 * 11 10 9 42 42 H 1.08996 * 111.00376 * 204.87436 * 11 10 9 43 43 H 1.00897 * 111.00064 * 210.40608 * 14 12 11 44 44 H 1.09004 * 109.46860 * 300.00296 * 15 14 12 45 45 H 1.09007 * 109.46949 * 59.99463 * 15 14 12 46 46 H 0.97001 * 120.00243 * 359.97438 * 18 16 15 47 47 H 0.97004 * 119.99266 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.46946 * 302.19386 * 29 27 9 49 49 H 1.09003 * 109.47334 * 62.19032 * 29 27 9 50 50 H 1.08992 * 109.47141 * 182.18813 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 6 3.7648 -1.0255 0.0011 6 6 4.5297 -2.3505 0.0011 7 6 6.0114 -2.0752 0.0009 8 8 6.4156 -0.9317 0.0014 9 7 6.8872 -3.0996 0.0003 10 6 6.5350 -4.5311 -0.0008 11 6 7.7676 -5.2433 0.6102 12 6 8.9340 -4.4036 0.0256 13 1 9.1841 -4.7392 -0.9808 14 7 10.1116 -4.4696 0.9011 15 6 10.9386 -5.6415 0.5839 16 6 12.1347 -5.6752 1.4999 17 8 12.2839 -4.8080 2.3346 18 7 13.0391 -6.6685 1.3910 19 6 14.1276 -6.6988 2.2240 20 1 14.2605 -5.9266 2.9672 21 6 15.0598 -7.7231 2.1120 22 7 14.8978 -8.6631 1.2080 23 14 16.5425 -7.7648 3.2475 24 1 16.0841 -7.8494 4.6573 25 1 17.3781 -8.9500 2.9272 26 1 17.3438 -6.5287 3.0608 27 6 8.3521 -2.9745 -0.0004 28 1 8.6799 -2.4248 0.8819 29 6 8.8117 -2.2484 -1.2662 30 1 -0.3635 -0.5138 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.9972 -1.8770 -0.8892 34 1 1.9971 -1.8764 0.8907 35 1 4.0277 -0.4538 0.8911 36 1 4.0284 -0.4541 -0.8888 37 1 4.2666 -2.9219 -0.8892 38 1 4.2662 -2.9223 0.8907 39 1 6.3624 -4.8785 -1.0195 40 1 5.6524 -4.7051 0.6149 41 1 7.7522 -5.1860 1.6986 42 1 7.8255 -6.2792 0.2764 43 1 10.6523 -3.6196 0.8446 44 1 10.3502 -6.5490 0.7204 45 1 11.2754 -5.5792 -0.4509 46 1 12.9200 -7.3619 0.7232 47 1 15.5484 -9.3783 1.1302 48 1 8.4650 -2.7936 -2.1440 49 1 8.3972 -1.2403 -1.2777 50 1 9.9002 -2.1937 -1.2788 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331849569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:50 Heat of formation + Delta-G solvation = -145.872778 kcal Electronic energy + Delta-G solvation = -28740.097347 eV Core-core repulsion = 24572.695138 eV Total energy + Delta-G solvation = -4167.402209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.38812 -40.45006 -40.12575 -38.93725 -36.20016 -35.54504 -35.28403 -33.27241 -32.58310 -31.86740 -31.33762 -28.82816 -28.23898 -26.49582 -25.06629 -24.36672 -22.81263 -21.46968 -21.09080 -20.51937 -19.98579 -19.69938 -18.14956 -17.67445 -17.59752 -17.03355 -16.85044 -16.66473 -16.37501 -16.12248 -15.94532 -15.74694 -15.54102 -15.19467 -14.84939 -14.69741 -14.43236 -14.24029 -14.03149 -13.84673 -13.48291 -13.36890 -13.27927 -13.12279 -13.00404 -12.84163 -12.82299 -12.72700 -12.61801 -12.47155 -12.42641 -12.25816 -12.12171 -11.93525 -11.72024 -11.63779 -11.50105 -10.89616 -10.51419 -10.34372 -10.00922 -9.67684 -9.38558 -8.46287 -5.94770 1.09499 1.39944 1.42223 1.52628 1.65591 1.90817 2.06315 2.29939 2.91968 3.19027 3.21231 3.35372 3.50746 3.67714 3.74836 4.02733 4.06708 4.08660 4.14504 4.26101 4.29239 4.34556 4.38522 4.46287 4.51052 4.54918 4.59764 4.60985 4.65093 4.75028 4.76694 4.79357 4.84098 4.89887 4.97383 5.08131 5.14156 5.17788 5.28084 5.29672 5.35072 5.41422 5.42024 5.89639 6.10738 6.28561 6.57305 6.61115 6.67142 7.13417 7.19104 7.57073 8.13023 8.70670 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036616 B = 0.001546 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.507639 B =18111.321925 C =18257.632922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.345 3.655 3 O -0.519 6.519 4 C -0.165 4.165 5 C -0.097 4.097 6 C -0.122 4.122 7 C 0.514 3.486 8 O -0.593 6.593 9 N -0.613 5.613 10 C 0.101 3.899 11 C -0.123 4.123 12 C 0.081 3.919 13 H 0.079 0.921 14 N -0.673 5.673 15 C 0.069 3.931 16 C 0.436 3.564 17 O -0.626 6.626 18 N -0.571 5.571 19 C -0.337 4.337 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.918 5.918 23 Si 0.990 3.010 24 H -0.273 1.273 25 H -0.269 1.269 26 H -0.274 1.274 27 C 0.134 3.866 28 H 0.052 0.948 29 C -0.155 4.155 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.118 0.882 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.039 0.961 36 H 0.043 0.957 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.105 0.895 43 H 0.342 0.658 44 H 0.112 0.888 45 H 0.070 0.930 46 H 0.398 0.602 47 H 0.278 0.722 48 H 0.071 0.929 49 H 0.046 0.954 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.751 2.786 -9.106 32.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.225 3.775 3 O -0.397 6.397 4 C -0.202 4.202 5 C -0.136 4.136 6 C -0.161 4.161 7 C 0.305 3.695 8 O -0.474 6.474 9 N -0.347 5.347 10 C -0.020 4.020 11 C -0.162 4.162 12 C -0.029 4.029 13 H 0.097 0.903 14 N -0.306 5.306 15 C -0.063 4.063 16 C 0.223 3.777 17 O -0.513 6.513 18 N -0.208 5.208 19 C -0.466 4.466 20 H 0.095 0.905 21 C -0.209 4.209 22 N -0.558 5.558 23 Si 0.814 3.186 24 H -0.198 1.198 25 H -0.193 1.193 26 H -0.199 1.199 27 C 0.029 3.971 28 H 0.070 0.930 29 C -0.213 4.213 30 H 0.135 0.865 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.088 0.912 42 H 0.123 0.877 43 H 0.161 0.839 44 H 0.130 0.870 45 H 0.087 0.913 46 H 0.232 0.768 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.065 0.935 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -30.406 4.064 -8.099 31.727 hybrid contribution 1.790 0.368 -0.396 1.870 sum -28.615 4.432 -8.494 30.177 Atomic orbital electron populations 1.22358 0.91728 1.04849 1.06845 1.25447 0.93727 0.90309 0.67973 1.90460 1.73437 1.37434 1.38393 1.22215 0.93071 0.97011 1.07875 1.21074 0.94816 0.96031 1.01631 1.21705 0.87390 0.99670 1.07339 1.21315 0.90100 0.83253 0.74852 1.90708 1.81223 1.23254 1.52171 1.48662 1.05436 1.07976 1.72639 1.22652 0.98823 0.77554 1.03009 1.22909 0.92182 0.99901 1.01207 1.22680 0.90990 0.93660 0.95529 0.90310 1.60174 1.09736 1.05375 1.55295 1.21561 0.92103 0.96264 0.96378 1.20929 0.85988 0.83213 0.87544 1.90505 1.78695 1.41148 1.40952 1.41896 1.21075 1.24489 1.33364 1.19618 1.01219 1.10631 1.15172 0.90543 1.25977 1.01467 0.94655 0.98824 1.69657 1.38088 1.13441 1.34653 0.85031 0.77404 0.77977 0.78185 1.19822 1.19339 1.19898 1.21465 0.81330 0.96282 0.98025 0.93027 1.22067 1.01406 1.00607 0.97256 0.86502 0.91618 0.86363 0.84724 0.85022 0.94254 0.93852 0.85275 0.85803 0.88445 0.87384 0.91216 0.87654 0.83906 0.87041 0.91257 0.76835 0.91265 0.90956 0.93463 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.87 10.26 71.23 0.73 -0.14 16 2 C 0.35 4.31 7.27 29.10 0.21 4.52 16 3 O -0.52 -12.99 16.71 -1.44 -0.02 -13.02 16 4 C -0.17 -1.01 5.64 29.85 0.17 -0.85 16 5 C -0.10 -1.55 3.79 30.60 0.12 -1.44 16 6 C -0.12 -1.34 4.71 29.85 0.14 -1.20 16 7 C 0.51 11.52 7.64 87.66 0.67 12.19 16 8 O -0.59 -19.90 15.03 -3.05 -0.05 -19.95 16 9 N -0.61 -11.99 3.06 -788.05 -2.42 -14.41 16 10 C 0.10 1.09 6.69 86.86 0.58 1.67 16 11 C -0.12 -1.98 6.71 31.99 0.21 -1.76 16 12 C 0.08 1.74 2.76 46.10 0.13 1.87 16 13 H 0.08 1.44 7.61 -2.39 -0.02 1.42 16 14 N -0.67 -20.45 5.93 -489.46 -2.90 -23.36 16 15 C 0.07 2.21 6.02 85.56 0.52 2.73 16 16 C 0.44 20.36 7.82 87.66 0.69 21.05 16 17 O -0.63 -34.87 15.78 -3.05 -0.05 -34.92 16 18 N -0.57 -28.77 5.29 -307.00 -1.62 -30.40 16 19 C -0.34 -19.06 9.68 84.04 0.81 -18.24 16 20 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 21 C -0.01 -0.48 5.50 84.93 0.47 -0.02 16 22 N -0.92 -48.70 13.05 21.66 0.28 -48.41 16 23 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 C 0.13 3.22 2.99 45.34 0.14 3.36 16 28 H 0.05 1.61 7.97 -2.39 -0.02 1.59 16 29 C -0.16 -3.66 9.10 71.98 0.65 -3.01 16 30 H 0.12 -0.04 8.14 -2.39 -0.02 -0.05 16 31 H 0.06 0.51 8.12 -2.39 -0.02 0.49 16 32 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.04 0.90 8.06 -2.39 -0.02 0.88 16 36 H 0.04 0.95 8.06 -2.39 -0.02 0.93 16 37 H 0.13 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.12 0.68 7.85 -2.39 -0.02 0.66 16 39 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.11 0.58 7.48 -2.38 -0.02 0.56 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.34 11.57 8.14 -89.70 -0.73 10.83 16 44 H 0.11 3.06 8.13 -2.38 -0.02 3.04 16 45 H 0.07 1.91 8.09 -2.38 -0.02 1.89 16 46 H 0.40 18.78 7.90 -92.71 -0.73 18.05 16 47 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 48 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.05 1.34 6.90 -2.39 -0.02 1.33 16 50 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -86.32 413.48 0.97 -85.35 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.51 Total: 33.60 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 6.23 Total: 20.74 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -6.66 Total: -116.57 kcal Atomic # 8 Polarization: -67.77 SS G_CDS: -0.12 Total: -67.88 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -86.32 0.97 -85.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331849569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.520 kcal (2) G-P(sol) polarization free energy of solvation -86.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds