Wall clock time and date at job start Tue Mar 31 2020 23:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.00121 * 2 1 4 4 C 1.54336 * 109.98941 * 238.96073 * 2 1 3 5 5 H 1.08991 * 111.00270 * 100.12677 * 4 2 1 6 6 N 1.46507 * 110.51479 * 336.97412 * 4 2 1 7 7 C 1.36939 * 119.99671 * 95.94951 * 6 4 2 8 8 H 1.08003 * 119.99649 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99952 * 180.02562 * 7 6 4 10 10 N 1.31613 * 119.99967 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46937 * 60.00130 * 11 9 7 13 13 H 1.48495 * 109.47165 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47135 * 300.00192 * 11 9 7 15 15 C 1.55157 * 103.02030 * 218.66670 * 4 2 1 16 16 C 1.54911 * 101.58267 * 35.30946 * 15 4 2 17 17 N 1.47025 * 109.88243 * 121.09561 * 2 1 3 18 18 C 1.34775 * 125.64921 * 298.39266 * 17 2 1 19 19 O 1.21285 * 119.99622 * 359.71534 * 18 17 2 20 20 C 1.50693 * 120.00370 * 179.71968 * 18 17 2 21 21 C 1.53005 * 109.47301 * 180.02562 * 20 18 17 22 22 C 1.50699 * 109.46996 * 179.97438 * 21 20 18 23 23 O 1.21285 * 120.00312 * 359.97438 * 22 21 20 24 24 N 1.34775 * 120.00065 * 179.97438 * 22 21 20 25 25 C 1.47147 * 120.98463 * 179.97438 * 24 22 21 26 26 C 1.53299 * 108.38713 * 230.51316 * 25 24 22 27 27 O 1.42964 * 109.21996 * 307.69691 * 26 25 24 28 28 C 1.42968 * 114.16575 * 62.58027 * 27 26 25 29 29 C 1.47152 * 120.98152 * 359.97351 * 24 22 21 30 30 H 1.09005 * 109.46747 * 304.42702 * 1 2 3 31 31 H 1.08998 * 109.46990 * 64.42899 * 1 2 3 32 32 H 1.08999 * 109.47143 * 184.43465 * 1 2 3 33 33 H 0.96993 * 120.00563 * 275.94999 * 6 4 2 34 34 H 0.96996 * 119.99779 * 180.02562 * 10 9 7 35 35 H 1.09001 * 111.00572 * 277.23481 * 15 4 2 36 36 H 1.09001 * 111.03565 * 153.39104 * 15 4 2 37 37 H 1.09004 * 110.36603 * 204.15363 * 16 15 4 38 38 H 1.08999 * 110.37030 * 81.82900 * 16 15 4 39 39 H 1.08999 * 109.47406 * 59.99572 * 20 18 17 40 40 H 1.09007 * 109.47052 * 299.99470 * 20 18 17 41 41 H 1.08994 * 109.47061 * 59.99873 * 21 20 18 42 42 H 1.08993 * 109.46626 * 299.99651 * 21 20 18 43 43 H 1.09004 * 109.68239 * 110.79157 * 25 24 22 44 44 H 1.09001 * 109.71598 * 350.25732 * 25 24 22 45 45 H 1.08997 * 109.51147 * 187.77404 * 26 25 24 46 46 H 1.08993 * 109.51092 * 67.61884 * 26 25 24 47 47 H 1.08995 * 109.50915 * 57.34311 * 28 27 26 48 48 H 1.08997 * 109.50826 * 177.48927 * 28 27 26 49 49 H 1.09000 * 109.68746 * 249.21424 * 29 24 22 50 50 H 1.09000 * 109.68021 * 9.76807 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0576 -0.7479 -1.2427 5 1 2.3593 -0.0474 -2.0213 6 7 1.0464 -1.6791 -1.7493 7 6 0.2169 -1.2998 -2.7707 8 1 0.3079 -0.3140 -3.2024 9 6 -0.7416 -2.1819 -3.2503 10 7 -0.8528 -3.3830 -2.7237 11 14 -1.8737 -1.6643 -4.6431 12 1 -1.0629 -1.3291 -5.8413 13 1 -2.7997 -2.7786 -4.9685 14 1 -2.6578 -0.4737 -4.2272 15 6 3.2863 -1.5184 -0.6915 16 6 2.8099 -1.8826 0.7369 17 7 2.0301 -0.7141 1.1839 18 6 1.8075 -0.3620 2.4657 19 8 1.1476 0.6238 2.7179 20 6 2.3785 -1.1932 3.5855 21 6 1.9805 -0.5804 4.9298 22 6 2.5510 -1.4121 6.0495 23 8 3.2106 -2.3981 5.7973 24 7 2.3283 -1.0601 7.3313 25 6 2.8745 -1.8566 8.4414 26 6 1.7373 -2.1615 9.4232 27 8 1.0831 -0.9411 9.7792 28 6 0.4604 -0.2692 8.6816 29 6 1.5318 0.1322 7.6620 30 1 -0.3633 0.5810 0.8477 31 1 -0.3633 0.4436 -0.9270 32 1 -0.3633 -1.0246 0.0795 33 1 0.9644 -2.5642 -1.3612 34 1 -1.5223 -3.9995 -3.0591 35 1 4.1670 -0.8770 -0.6579 36 1 3.4812 -2.4157 -1.2789 37 1 3.6656 -2.0413 1.3932 38 1 2.1801 -2.7719 0.7115 39 1 3.4652 -1.2159 3.5036 40 1 1.9879 -2.2088 3.5198 41 1 0.8938 -0.5582 5.0114 42 1 2.3707 0.4351 4.9957 43 1 3.6561 -1.2914 8.9491 44 1 3.2872 -2.7893 8.0566 45 1 2.1452 -2.6305 10.3186 46 1 1.0209 -2.8348 8.9527 47 1 -0.2607 -0.9357 8.2085 48 1 -0.0505 0.6231 9.0436 49 1 2.1779 0.8981 8.0910 50 1 1.0547 0.5166 6.7605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331940280.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:00 Heat of formation + Delta-G solvation = -94.281967 kcal Electronic energy + Delta-G solvation = -30211.783907 eV Core-core repulsion = 26046.618843 eV Total energy + Delta-G solvation = -4165.165064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.73978 -39.85390 -38.67113 -37.45923 -35.13479 -33.99432 -33.17445 -31.84608 -31.37564 -30.65096 -28.99448 -28.30268 -25.74772 -25.21373 -24.33813 -23.35781 -22.59138 -21.84870 -19.85253 -19.30388 -18.53064 -17.79081 -17.38411 -16.91147 -16.51484 -16.37462 -15.96380 -15.86790 -15.51919 -15.27403 -15.00572 -14.50074 -14.22801 -13.94810 -13.72632 -13.51964 -13.35778 -13.06166 -13.00339 -12.69058 -12.56091 -12.36476 -12.33512 -11.86409 -11.85308 -11.52987 -11.34860 -11.24166 -11.19320 -10.87973 -10.85656 -10.64438 -10.61245 -10.48911 -10.17747 -10.08189 -10.05737 -9.68371 -9.44922 -8.98971 -8.96527 -8.22193 -7.05000 -5.82911 -3.12225 2.32123 2.44487 2.91608 3.32305 3.35929 3.40997 3.46093 3.46359 4.14882 4.26029 4.49153 4.53860 4.58075 4.70179 4.71655 4.77071 4.87416 4.92757 5.01799 5.04630 5.13828 5.25345 5.30179 5.33385 5.37605 5.44669 5.48838 5.58637 5.70719 5.72388 5.78653 5.80291 5.90829 5.99873 6.10350 6.24191 6.32392 6.45103 6.59090 6.59747 6.66803 6.83518 6.92974 7.04568 7.34422 7.64339 7.81570 7.93799 8.34453 8.47439 9.46550 10.00615 10.35894 11.39109 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.002138 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.656777 B =13091.171633 C =13430.513479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.108 3.892 3 H 0.058 0.942 4 C 0.170 3.830 5 H 0.074 0.926 6 N -0.709 5.709 7 C -0.240 4.240 8 H 0.071 0.929 9 C -0.009 4.009 10 N -0.931 5.931 11 Si 0.905 3.095 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.286 1.286 15 C -0.146 4.146 16 C 0.101 3.899 17 N -0.603 5.603 18 C 0.525 3.475 19 O -0.553 6.553 20 C -0.121 4.121 21 C -0.122 4.122 22 C 0.519 3.481 23 O -0.537 6.537 24 N -0.620 5.620 25 C 0.076 3.924 26 C 0.047 3.953 27 O -0.381 6.381 28 C 0.046 3.954 29 C 0.070 3.930 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.075 0.925 44 H 0.102 0.898 45 H 0.107 0.893 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.109 0.891 49 H 0.080 0.920 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.358 4.874 22.314 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.003 3.997 3 H 0.077 0.923 4 C 0.057 3.943 5 H 0.092 0.908 6 N -0.348 5.348 7 C -0.371 4.371 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.736 3.264 12 H -0.213 1.213 13 H -0.218 1.218 14 H -0.212 1.212 15 C -0.185 4.185 16 C -0.022 4.022 17 N -0.336 5.336 18 C 0.313 3.687 19 O -0.432 6.432 20 C -0.162 4.162 21 C -0.162 4.162 22 C 0.309 3.691 23 O -0.414 6.414 24 N -0.356 5.356 25 C -0.047 4.047 26 C -0.030 4.030 27 O -0.299 6.299 28 C -0.032 4.032 29 C -0.053 4.053 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.219 0.781 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.093 0.907 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.127 0.873 49 H 0.098 0.902 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.235 4.998 22.379 24.364 hybrid contribution -0.722 -0.179 -0.844 1.125 sum 7.513 4.819 21.535 23.311 Atomic orbital electron populations 1.21751 0.93738 1.02732 1.00723 1.22724 0.96154 0.95337 0.85516 0.92347 1.21262 0.88482 0.92250 0.92290 0.90766 1.42327 1.37588 1.14368 1.40528 1.19146 1.10257 0.98549 1.09149 0.91119 1.24723 0.99737 0.96169 0.99939 1.69638 1.37300 1.06492 1.44382 0.86298 0.80624 0.77269 0.82169 1.21252 1.21762 1.21218 1.23150 0.98543 1.01797 0.94983 1.22325 0.94754 0.89042 0.96085 1.48630 1.51722 1.28099 1.05152 1.20122 0.80529 0.85325 0.82681 1.90654 1.40912 1.28178 1.83459 1.21352 1.02995 1.00448 0.91361 1.21392 1.03165 1.00052 0.91575 1.20862 0.79736 0.85278 0.83261 1.90706 1.39837 1.27500 1.83327 1.48150 1.53678 1.28072 1.05711 1.22281 0.96620 0.98029 0.87730 1.23004 0.94133 0.86651 0.99214 1.87974 1.71892 1.37039 1.32970 1.23004 0.94000 0.98158 0.88006 1.22510 0.94361 0.87681 1.00793 0.94292 0.91477 0.91658 0.78077 0.93402 0.91091 0.89497 0.91343 0.91084 0.88515 0.88333 0.87998 0.88026 0.90681 0.87958 0.87541 0.92470 0.92320 0.87328 0.90198 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 8.05 37.16 0.30 -2.41 16 2 C 0.11 1.97 3.43 -66.94 -0.23 1.74 16 3 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 4 C 0.17 3.12 3.54 -66.09 -0.23 2.89 16 5 H 0.07 1.36 8.06 -51.93 -0.42 0.94 16 6 N -0.71 -16.26 3.84 -51.64 -0.20 -16.46 16 7 C -0.24 -6.20 8.49 -15.06 -0.13 -6.33 16 8 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 9 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16 11 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 C -0.15 -2.14 6.69 -24.58 -0.16 -2.31 16 16 C 0.10 1.44 6.62 -2.53 -0.02 1.43 16 17 N -0.60 -9.82 3.06 -163.00 -0.50 -10.32 16 18 C 0.52 8.33 7.64 -10.99 -0.08 8.25 16 19 O -0.55 -10.20 15.10 5.55 0.08 -10.12 16 20 C -0.12 -1.51 4.00 -27.88 -0.11 -1.62 16 21 C -0.12 -1.30 3.36 -27.88 -0.09 -1.39 16 22 C 0.52 5.84 7.71 -10.99 -0.08 5.76 16 23 O -0.54 -7.72 15.45 5.55 0.09 -7.64 16 24 N -0.62 -5.56 3.02 -172.30 -0.52 -6.08 16 25 C 0.08 0.60 6.64 -3.53 -0.02 0.57 16 26 C 0.05 0.32 6.99 37.31 0.26 0.58 16 27 O -0.38 -3.10 10.74 -35.23 -0.38 -3.48 16 28 C 0.05 0.29 6.98 37.29 0.26 0.55 16 29 C 0.07 0.46 6.54 -3.55 -0.02 0.43 16 30 H 0.04 0.79 7.02 -51.93 -0.36 0.43 16 31 H 0.07 1.45 7.25 -51.93 -0.38 1.07 16 32 H 0.06 1.51 7.55 -51.93 -0.39 1.12 16 33 H 0.39 9.52 7.84 -40.82 -0.32 9.20 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 0.80 7.48 -51.93 -0.39 0.41 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.10 1.13 7.81 -51.93 -0.41 0.72 16 40 H 0.10 1.25 8.10 -51.93 -0.42 0.83 16 41 H 0.10 1.05 7.62 -51.93 -0.40 0.66 16 42 H 0.10 1.00 7.97 -51.93 -0.41 0.59 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.90 7.08 -51.93 -0.37 0.53 16 45 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.10 0.59 6.05 -51.93 -0.31 0.28 16 LS Contribution 394.69 15.07 5.95 5.95 Total: -1.00 -32.79 394.69 -8.60 -41.38 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -8.35 Total: 8.47 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -0.47 Total: 7.80 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.49 Total: -59.10 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.21 Total: -21.24 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.79 -8.60 -41.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331940280.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.899 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds