Wall clock time and date at job start Tue Mar 31 2020 23:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.00121 * 2 1 4 4 C 1.54336 * 109.98941 * 238.96073 * 2 1 3 5 5 H 1.08991 * 111.00270 * 100.12677 * 4 2 1 6 6 N 1.46507 * 110.51479 * 336.97412 * 4 2 1 7 7 C 1.36939 * 119.99671 * 95.94951 * 6 4 2 8 8 H 1.08003 * 119.99649 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99952 * 180.02562 * 7 6 4 10 10 N 1.31613 * 119.99967 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46937 * 60.00130 * 11 9 7 13 13 H 1.48495 * 109.47165 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47135 * 300.00192 * 11 9 7 15 15 C 1.55157 * 103.02030 * 218.66670 * 4 2 1 16 16 C 1.54911 * 101.58267 * 35.30946 * 15 4 2 17 17 N 1.47025 * 109.88243 * 121.09561 * 2 1 3 18 18 C 1.34775 * 125.64921 * 298.39266 * 17 2 1 19 19 O 1.21285 * 119.99622 * 359.71534 * 18 17 2 20 20 C 1.50693 * 120.00370 * 179.71968 * 18 17 2 21 21 C 1.53005 * 109.47301 * 180.02562 * 20 18 17 22 22 C 1.50699 * 109.46996 * 179.97438 * 21 20 18 23 23 O 1.21285 * 120.00312 * 359.97438 * 22 21 20 24 24 N 1.34775 * 120.00065 * 179.97438 * 22 21 20 25 25 C 1.47147 * 120.98463 * 179.97438 * 24 22 21 26 26 C 1.53299 * 108.38713 * 230.51316 * 25 24 22 27 27 O 1.42964 * 109.21996 * 307.69691 * 26 25 24 28 28 C 1.42968 * 114.16575 * 62.58027 * 27 26 25 29 29 C 1.47152 * 120.98152 * 359.97351 * 24 22 21 30 30 H 1.09005 * 109.46747 * 304.42702 * 1 2 3 31 31 H 1.08998 * 109.46990 * 64.42899 * 1 2 3 32 32 H 1.08999 * 109.47143 * 184.43465 * 1 2 3 33 33 H 0.96993 * 120.00563 * 275.94999 * 6 4 2 34 34 H 0.96996 * 119.99779 * 180.02562 * 10 9 7 35 35 H 1.09001 * 111.00572 * 277.23481 * 15 4 2 36 36 H 1.09001 * 111.03565 * 153.39104 * 15 4 2 37 37 H 1.09004 * 110.36603 * 204.15363 * 16 15 4 38 38 H 1.08999 * 110.37030 * 81.82900 * 16 15 4 39 39 H 1.08999 * 109.47406 * 59.99572 * 20 18 17 40 40 H 1.09007 * 109.47052 * 299.99470 * 20 18 17 41 41 H 1.08994 * 109.47061 * 59.99873 * 21 20 18 42 42 H 1.08993 * 109.46626 * 299.99651 * 21 20 18 43 43 H 1.09004 * 109.68239 * 110.79157 * 25 24 22 44 44 H 1.09001 * 109.71598 * 350.25732 * 25 24 22 45 45 H 1.08997 * 109.51147 * 187.77404 * 26 25 24 46 46 H 1.08993 * 109.51092 * 67.61884 * 26 25 24 47 47 H 1.08995 * 109.50915 * 57.34311 * 28 27 26 48 48 H 1.08997 * 109.50826 * 177.48927 * 28 27 26 49 49 H 1.09000 * 109.68746 * 249.21424 * 29 24 22 50 50 H 1.09000 * 109.68021 * 9.76807 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0576 -0.7479 -1.2427 5 1 2.3593 -0.0474 -2.0213 6 7 1.0464 -1.6791 -1.7493 7 6 0.2169 -1.2998 -2.7707 8 1 0.3079 -0.3140 -3.2024 9 6 -0.7416 -2.1819 -3.2503 10 7 -0.8528 -3.3830 -2.7237 11 14 -1.8737 -1.6643 -4.6431 12 1 -1.0629 -1.3291 -5.8413 13 1 -2.7997 -2.7786 -4.9685 14 1 -2.6578 -0.4737 -4.2272 15 6 3.2863 -1.5184 -0.6915 16 6 2.8099 -1.8826 0.7369 17 7 2.0301 -0.7141 1.1839 18 6 1.8075 -0.3620 2.4657 19 8 1.1476 0.6238 2.7179 20 6 2.3785 -1.1932 3.5855 21 6 1.9805 -0.5804 4.9298 22 6 2.5510 -1.4121 6.0495 23 8 3.2106 -2.3981 5.7973 24 7 2.3283 -1.0601 7.3313 25 6 2.8745 -1.8566 8.4414 26 6 1.7373 -2.1615 9.4232 27 8 1.0831 -0.9411 9.7792 28 6 0.4604 -0.2692 8.6816 29 6 1.5318 0.1322 7.6620 30 1 -0.3633 0.5810 0.8477 31 1 -0.3633 0.4436 -0.9270 32 1 -0.3633 -1.0246 0.0795 33 1 0.9644 -2.5642 -1.3612 34 1 -1.5223 -3.9995 -3.0591 35 1 4.1670 -0.8770 -0.6579 36 1 3.4812 -2.4157 -1.2789 37 1 3.6656 -2.0413 1.3932 38 1 2.1801 -2.7719 0.7115 39 1 3.4652 -1.2159 3.5036 40 1 1.9879 -2.2088 3.5198 41 1 0.8938 -0.5582 5.0114 42 1 2.3707 0.4351 4.9957 43 1 3.6561 -1.2914 8.9491 44 1 3.2872 -2.7893 8.0566 45 1 2.1452 -2.6305 10.3186 46 1 1.0209 -2.8348 8.9527 47 1 -0.2607 -0.9357 8.2085 48 1 -0.0505 0.6231 9.0436 49 1 2.1779 0.8981 8.0910 50 1 1.0547 0.5166 6.7605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331940280.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:00 Heat of formation + Delta-G solvation = -116.321155 kcal Electronic energy + Delta-G solvation = -30212.739598 eV Core-core repulsion = 26046.618843 eV Total energy + Delta-G solvation = -4166.120755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.58161 -41.06675 -39.44136 -38.81438 -35.85889 -35.73211 -34.18637 -33.19661 -32.37446 -32.04507 -30.56404 -29.08358 -26.84654 -26.64169 -25.25588 -24.93134 -23.60964 -22.76769 -21.18354 -20.12275 -19.78260 -19.36257 -18.63714 -17.80806 -17.41122 -17.33213 -17.09090 -16.68386 -16.44314 -16.07930 -16.00027 -15.96511 -15.46985 -15.27331 -15.09370 -14.85429 -14.53129 -14.39834 -14.04169 -13.88915 -13.62508 -13.53697 -13.13498 -13.07471 -12.98799 -12.75458 -12.68163 -12.39913 -12.37461 -12.31328 -12.23420 -12.20797 -11.82404 -11.77900 -11.68732 -11.48432 -11.27038 -10.95001 -10.91115 -10.75954 -9.67307 -9.57506 -8.98529 -7.90679 -5.17550 1.47228 1.49204 1.50417 1.55820 1.64431 1.71468 2.14893 2.58205 2.84118 3.28667 3.41815 3.69888 3.73446 3.76115 3.78347 3.91155 3.98997 4.02378 4.08236 4.15436 4.20616 4.25802 4.28602 4.42281 4.45485 4.55288 4.57935 4.63433 4.66011 4.73506 4.77481 4.79948 4.82900 4.85077 4.90057 4.91720 5.02844 5.14484 5.26181 5.30987 5.33410 5.51449 5.54174 5.60735 6.07343 6.18935 6.30479 6.65634 6.99499 7.19136 7.38447 8.11777 8.35401 9.32140 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.002138 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.656777 B =13091.171633 C =13430.513479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.114 3.886 3 H 0.068 0.932 4 C 0.161 3.839 5 H 0.079 0.921 6 N -0.717 5.717 7 C -0.226 4.226 8 H 0.076 0.924 9 C -0.072 4.072 10 N -0.967 5.967 11 Si 0.962 3.038 12 H -0.277 1.277 13 H -0.301 1.301 14 H -0.283 1.283 15 C -0.131 4.131 16 C 0.102 3.898 17 N -0.607 5.607 18 C 0.523 3.477 19 O -0.580 6.580 20 C -0.111 4.111 21 C -0.115 4.115 22 C 0.520 3.480 23 O -0.574 6.574 24 N -0.618 5.618 25 C 0.074 3.926 26 C 0.050 3.950 27 O -0.394 6.394 28 C 0.044 3.956 29 C 0.067 3.933 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.374 0.626 34 H 0.248 0.752 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.127 0.873 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.130 0.870 49 H 0.092 0.908 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.784 6.174 23.479 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.008 3.992 3 H 0.086 0.914 4 C 0.050 3.950 5 H 0.097 0.903 6 N -0.355 5.355 7 C -0.358 4.358 8 H 0.094 0.906 9 C -0.264 4.264 10 N -0.618 5.618 11 Si 0.792 3.208 12 H -0.204 1.204 13 H -0.228 1.228 14 H -0.210 1.210 15 C -0.170 4.170 16 C -0.020 4.020 17 N -0.339 5.339 18 C 0.313 3.687 19 O -0.462 6.462 20 C -0.151 4.151 21 C -0.155 4.155 22 C 0.309 3.691 23 O -0.454 6.454 24 N -0.353 5.353 25 C -0.048 4.048 26 C -0.027 4.027 27 O -0.313 6.313 28 C -0.034 4.034 29 C -0.055 4.055 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.207 0.793 34 H 0.057 0.943 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.131 0.869 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.145 0.855 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.148 0.852 49 H 0.111 0.889 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.690 6.352 23.578 26.271 hybrid contribution -1.137 -0.488 -1.113 1.665 sum 8.553 5.864 22.465 24.742 Atomic orbital electron populations 1.21555 0.95879 1.00288 0.99690 1.22461 0.94221 0.96054 0.86496 0.91438 1.21494 0.88905 0.92147 0.92424 0.90303 1.42433 1.38354 1.14632 1.40071 1.19483 1.09475 0.98204 1.08592 0.90565 1.25399 1.01839 0.96549 1.02648 1.69784 1.38270 1.07562 1.46170 0.85381 0.78900 0.76426 0.80082 1.20356 1.22784 1.20959 1.23080 0.97668 1.01714 0.94555 1.22420 0.95341 0.87628 0.96643 1.48688 1.51888 1.28431 1.04908 1.20704 0.79879 0.85140 0.83009 1.90638 1.42106 1.29548 1.83859 1.21289 1.03526 0.99524 0.90769 1.21334 1.03310 1.00344 0.90519 1.20886 0.79358 0.84780 0.84042 1.90689 1.41707 1.29025 1.83977 1.48252 1.53138 1.28583 1.05291 1.22372 0.97326 0.97611 0.87531 1.23056 0.93556 0.86315 0.99759 1.87959 1.72033 1.37433 1.33866 1.23143 0.93771 0.98807 0.87641 1.22700 0.94467 0.86977 1.01359 0.94591 0.93004 0.94757 0.79345 0.94316 0.87970 0.89621 0.87836 0.92594 0.87125 0.88585 0.87764 0.86881 0.89630 0.89113 0.85517 0.93090 0.92759 0.85231 0.88934 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.82 8.05 71.98 0.58 -4.24 16 2 C 0.11 4.02 3.43 45.35 0.16 4.18 16 3 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.16 5.71 3.54 46.18 0.16 5.87 16 5 H 0.08 2.74 8.06 -2.39 -0.02 2.72 16 6 N -0.72 -32.93 3.84 -317.30 -1.22 -34.15 16 7 C -0.23 -11.68 8.49 84.03 0.71 -10.97 16 8 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 9 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 10 N -0.97 -57.42 13.06 21.65 0.28 -57.14 16 11 Si 0.96 45.27 29.55 68.60 2.03 47.30 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 13 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 15 C -0.13 -3.53 6.69 31.99 0.21 -3.32 16 16 C 0.10 2.70 6.62 86.85 0.58 3.27 16 17 N -0.61 -18.82 3.06 -788.01 -2.41 -21.23 16 18 C 0.52 15.82 7.64 87.66 0.67 16.49 16 19 O -0.58 -20.77 15.10 -3.04 -0.05 -20.81 16 20 C -0.11 -2.57 4.00 29.85 0.12 -2.45 16 21 C -0.12 -2.27 3.36 29.85 0.10 -2.17 16 22 C 0.52 11.05 7.71 87.66 0.68 11.73 16 23 O -0.57 -16.07 15.45 -3.04 -0.05 -16.12 16 24 N -0.62 -10.19 3.02 -817.43 -2.47 -12.66 16 25 C 0.07 1.07 6.64 86.36 0.57 1.65 16 26 C 0.05 0.62 6.99 72.08 0.50 1.12 16 27 O -0.39 -5.72 10.74 -148.98 -1.60 -7.32 16 28 C 0.04 0.47 6.98 72.07 0.50 0.97 16 29 C 0.07 0.75 6.54 86.34 0.56 1.31 16 30 H 0.04 1.48 7.02 -2.38 -0.02 1.46 16 31 H 0.05 2.26 7.25 -2.39 -0.02 2.24 16 32 H 0.03 1.61 7.55 -2.39 -0.02 1.59 16 33 H 0.37 18.80 7.84 -92.71 -0.73 18.07 16 34 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.10 2.06 7.48 -2.39 -0.02 2.04 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.11 2.29 7.81 -2.39 -0.02 2.27 16 40 H 0.10 2.32 8.10 -2.38 -0.02 2.30 16 41 H 0.10 2.01 7.62 -2.39 -0.02 2.00 16 42 H 0.11 1.98 7.97 -2.39 -0.02 1.96 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 1.55 7.08 -2.39 -0.02 1.53 16 45 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.11 1.05 6.05 -2.39 -0.01 1.03 16 Total: -1.00 -71.33 394.69 1.30 -70.03 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.21 Total: 32.17 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 6.58 Total: 19.93 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -5.82 Total: -125.17 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -1.69 Total: -44.26 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -71.33 1.30 -70.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331940280.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.292 kcal (2) G-P(sol) polarization free energy of solvation -71.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds