Wall clock time and date at job start Tue Mar 31 2020 23:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.99746 * 2 1 4 4 C 1.54309 * 109.77394 * 121.15799 * 2 1 3 5 5 H 1.08992 * 110.93075 * 23.46706 * 4 2 1 6 6 N 1.46501 * 110.58783 * 260.14344 * 4 2 1 7 7 C 1.36937 * 120.00104 * 160.19675 * 6 4 2 8 8 H 1.08005 * 120.00186 * 359.97438 * 7 6 4 9 9 C 1.38816 * 120.00406 * 179.97438 * 7 6 4 10 10 N 1.31615 * 119.99539 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00201 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47198 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46883 * 120.00156 * 11 9 7 14 14 H 1.48503 * 109.47238 * 240.00157 * 11 9 7 15 15 C 1.55156 * 102.86555 * 141.88788 * 4 2 1 16 16 C 1.54913 * 101.57972 * 324.29912 * 15 4 2 17 17 N 1.47024 * 109.88160 * 238.90372 * 2 1 3 18 18 C 1.34776 * 125.64708 * 61.68025 * 17 2 1 19 19 O 1.21277 * 120.00446 * 359.71367 * 18 17 2 20 20 C 1.50703 * 119.99916 * 179.71524 * 18 17 2 21 21 C 1.53009 * 109.47018 * 179.97438 * 20 18 17 22 22 C 1.50695 * 109.46874 * 179.97438 * 21 20 18 23 23 O 1.21277 * 120.00205 * 0.02562 * 22 21 20 24 24 N 1.34783 * 119.99989 * 180.02562 * 22 21 20 25 25 C 1.47150 * 120.98195 * 180.02562 * 24 22 21 26 26 C 1.53297 * 108.41463 * 129.46998 * 25 24 22 27 27 O 1.42959 * 109.22380 * 52.27862 * 26 25 24 28 28 C 1.42962 * 114.16836 * 297.42270 * 27 26 25 29 29 C 1.47168 * 120.98561 * 359.93788 * 24 22 21 30 30 H 1.08995 * 109.46757 * 179.64150 * 1 2 3 31 31 H 1.08994 * 109.46932 * 299.64296 * 1 2 3 32 32 H 1.09001 * 109.46833 * 59.64302 * 1 2 3 33 33 H 0.97003 * 120.00179 * 340.19154 * 6 4 2 34 34 H 0.97007 * 119.99912 * 179.97438 * 10 9 7 35 35 H 1.09004 * 111.00359 * 206.22834 * 15 4 2 36 36 H 1.08994 * 111.04306 * 82.38683 * 15 4 2 37 37 H 1.08998 * 110.36609 * 278.17551 * 16 15 4 38 38 H 1.08998 * 110.46160 * 155.89856 * 16 15 4 39 39 H 1.08999 * 109.46935 * 60.00118 * 20 18 17 40 40 H 1.08994 * 109.47355 * 299.99713 * 20 18 17 41 41 H 1.09004 * 109.46475 * 60.00238 * 21 20 18 42 42 H 1.08994 * 109.47083 * 300.00197 * 21 20 18 43 43 H 1.09002 * 109.68441 * 9.72390 * 25 24 22 44 44 H 1.08999 * 109.68020 * 249.20732 * 25 24 22 45 45 H 1.08999 * 109.51259 * 172.20847 * 26 25 24 46 46 H 1.09008 * 109.50766 * 292.35686 * 26 25 24 47 47 H 1.09003 * 109.50965 * 182.50710 * 28 27 26 48 48 H 1.09003 * 109.51190 * 302.65332 * 28 27 26 49 49 H 1.08999 * 109.64585 * 110.81288 * 29 24 22 50 50 H 1.08999 * 109.71687 * 350.29086 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0521 -0.7513 1.2426 5 1 1.3051 -1.4513 1.6168 6 7 2.4473 0.1952 2.2886 7 6 2.5497 -0.2239 3.5882 8 1 2.3386 -1.2523 3.8422 9 6 2.9246 0.6728 4.5793 10 7 3.1813 1.9260 4.2699 11 14 3.0636 0.1011 6.3523 12 1 2.7244 -1.3422 6.4350 13 1 4.4530 0.3110 6.8325 14 1 2.1243 0.8801 7.1986 15 6 3.2889 -1.5101 0.6933 16 6 2.8191 -1.8763 -0.7368 17 7 2.0300 -0.7141 -1.1839 18 6 1.8085 -0.3612 -2.4657 19 8 1.1413 0.6195 -2.7181 20 6 2.3901 -1.1854 -3.5854 21 6 1.9912 -0.5732 -4.9297 22 6 2.5733 -1.3970 -6.0492 23 8 3.2409 -2.3775 -5.7969 24 7 2.3519 -1.0441 -7.3311 25 6 2.9093 -1.8331 -8.4410 26 6 1.7788 -2.1468 -9.4277 27 8 1.1139 -0.9323 -9.7834 28 6 0.4805 -0.2690 -8.6867 29 6 1.5440 0.1406 -7.6621 30 1 -0.3633 -1.0276 -0.0064 31 1 -0.3633 0.5083 0.8931 32 1 -0.3633 0.5194 -0.8868 33 1 2.6365 1.1189 2.0606 34 1 3.4430 2.5528 4.9625 35 1 3.4897 -2.4065 1.2800 36 1 4.1643 -0.8614 0.6628 37 1 2.1971 -2.7711 -0.7143 38 1 3.6766 -2.0276 -1.3925 39 1 2.0079 -2.2043 -3.5229 40 1 3.4766 -1.1991 -3.5000 41 1 2.3732 0.4458 -4.9923 42 1 0.9047 -0.5598 -5.0148 43 1 3.3292 -2.7625 -8.0562 44 1 3.6875 -1.2596 -8.9446 45 1 2.1947 -2.6098 -10.3226 46 1 1.0673 -2.8284 -8.9614 47 1 -0.0378 0.6190 -9.0486 48 1 -0.2358 -0.9437 -8.2177 49 1 2.1842 0.9137 -8.0870 50 1 1.0598 0.5188 -6.7617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331940286.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:06 Heat of formation + Delta-G solvation = -121.011952 kcal Electronic energy + Delta-G solvation = -29774.505242 eV Core-core repulsion = 25608.181079 eV Total energy + Delta-G solvation = -4166.324163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59115 -41.08454 -39.42549 -38.78410 -35.91429 -35.84143 -34.23018 -33.27566 -32.42382 -32.09879 -30.78991 -29.09578 -26.85850 -26.70307 -25.02920 -24.73317 -23.65885 -22.75542 -21.56749 -20.21247 -19.95352 -19.14542 -18.66501 -17.86945 -17.45576 -17.33532 -17.05342 -16.67326 -16.53947 -16.16160 -16.04180 -15.97325 -15.48144 -15.37324 -14.92697 -14.71764 -14.61906 -14.38510 -14.06182 -13.82893 -13.55463 -13.53188 -13.24723 -13.12357 -13.05787 -12.92764 -12.71303 -12.61532 -12.50927 -12.36455 -12.23174 -12.13006 -12.05509 -11.76563 -11.71586 -11.53296 -11.25499 -10.95184 -10.90364 -10.80296 -9.67038 -9.65298 -9.02488 -7.94232 -5.23974 1.48386 1.49425 1.49698 1.59711 1.61533 1.68199 2.04401 2.57430 2.85603 3.26559 3.38869 3.63194 3.70631 3.76741 3.78675 3.89195 3.99560 4.03019 4.08653 4.09892 4.20084 4.21179 4.26569 4.36535 4.42724 4.46285 4.52362 4.58314 4.64684 4.68467 4.73898 4.76912 4.79017 4.84021 4.89461 4.92516 4.95108 5.06124 5.23211 5.23898 5.33667 5.35337 5.46299 5.55563 6.09177 6.20054 6.26408 6.57856 7.00205 7.13425 7.32845 8.05056 8.28644 9.29449 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033154 B = 0.001860 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.349654 B =15048.552415 C =15446.440642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.133 3.867 3 H 0.046 0.954 4 C 0.170 3.830 5 H 0.070 0.930 6 N -0.729 5.729 7 C -0.234 4.234 8 H 0.083 0.917 9 C -0.077 4.077 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.262 1.262 13 H -0.297 1.297 14 H -0.297 1.297 15 C -0.149 4.149 16 C 0.105 3.895 17 N -0.610 5.610 18 C 0.525 3.475 19 O -0.578 6.578 20 C -0.110 4.110 21 C -0.117 4.117 22 C 0.520 3.480 23 O -0.574 6.574 24 N -0.619 5.619 25 C 0.073 3.927 26 C 0.051 3.949 27 O -0.396 6.396 28 C 0.045 3.955 29 C 0.066 3.934 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.371 0.629 34 H 0.250 0.750 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.125 0.875 46 H 0.054 0.946 47 H 0.128 0.872 48 H 0.058 0.942 49 H 0.088 0.912 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 -9.439 -28.646 30.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.064 0.936 4 C 0.060 3.940 5 H 0.088 0.912 6 N -0.369 5.369 7 C -0.366 4.366 8 H 0.101 0.899 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.803 3.197 12 H -0.186 1.186 13 H -0.224 1.224 14 H -0.224 1.224 15 C -0.190 4.190 16 C -0.017 4.017 17 N -0.344 5.344 18 C 0.316 3.684 19 O -0.458 6.458 20 C -0.150 4.150 21 C -0.157 4.157 22 C 0.310 3.690 23 O -0.453 6.453 24 N -0.353 5.353 25 C -0.049 4.049 26 C -0.026 4.026 27 O -0.314 6.314 28 C -0.033 4.033 29 C -0.056 4.056 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.203 0.797 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.143 0.857 46 H 0.073 0.927 47 H 0.146 0.854 48 H 0.077 0.923 49 H 0.106 0.894 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.286 -9.480 -28.758 30.582 hybrid contribution 0.427 0.545 1.520 1.671 sum -3.858 -8.934 -27.238 28.924 Atomic orbital electron populations 1.21926 0.94063 1.02374 1.01749 1.21598 0.94982 0.95374 0.85207 0.93586 1.21448 0.94892 0.91113 0.86551 0.91207 1.42528 1.81530 1.09148 1.03659 1.19652 1.36824 0.95265 0.84843 0.89893 1.25581 1.03304 0.95885 1.02184 1.69839 1.55010 1.04106 1.33217 0.85073 0.76504 0.77985 0.80188 1.18592 1.22395 1.22435 1.23389 0.99062 1.01259 0.95266 1.22512 0.95752 0.88160 0.95315 1.48636 1.51994 1.29082 1.04641 1.20761 0.79948 0.84964 0.82747 1.90657 1.41967 1.29445 1.83768 1.21296 1.03158 1.00141 0.90396 1.21353 1.03601 1.00179 0.90540 1.20883 0.79510 0.84645 0.83995 1.90688 1.41398 1.29301 1.83944 1.48258 1.52535 1.29137 1.05348 1.22370 0.97248 0.97702 0.87589 1.23051 0.93470 0.86420 0.99645 1.87961 1.71277 1.38179 1.34028 1.23141 0.93647 0.98921 0.87547 1.22701 0.94319 0.87132 1.01434 0.91356 0.92501 0.92492 0.79701 0.94142 0.89422 0.92680 0.88910 0.88644 0.87130 0.87824 0.87547 0.86993 0.88991 0.90017 0.85671 0.92731 0.85375 0.92329 0.89402 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.10 71.98 0.66 -3.97 16 2 C 0.13 4.62 3.20 45.34 0.15 4.76 16 3 H 0.05 1.89 7.68 -2.39 -0.02 1.87 16 4 C 0.17 6.32 3.11 46.17 0.14 6.46 16 5 H 0.07 2.55 7.84 -2.39 -0.02 2.53 16 6 N -0.73 -35.63 5.25 -317.35 -1.67 -37.30 16 7 C -0.23 -12.47 9.98 84.03 0.84 -11.63 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 10 N -0.97 -59.09 13.06 21.65 0.28 -58.81 16 11 Si 0.97 45.29 29.55 68.60 2.03 47.32 16 12 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 13 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 14 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 15 C -0.15 -4.61 6.76 31.99 0.22 -4.40 16 16 C 0.10 2.44 6.69 86.86 0.58 3.03 16 17 N -0.61 -17.41 3.07 -788.08 -2.42 -19.83 16 18 C 0.53 14.38 7.64 87.66 0.67 15.06 16 19 O -0.58 -19.24 15.01 -3.02 -0.05 -19.28 16 20 C -0.11 -2.20 3.99 29.85 0.12 -2.08 16 21 C -0.12 -2.01 3.36 29.85 0.10 -1.91 16 22 C 0.52 9.92 7.71 87.65 0.68 10.60 16 23 O -0.57 -14.69 15.45 -3.02 -0.05 -14.74 16 24 N -0.62 -9.17 3.02 -817.39 -2.47 -11.64 16 25 C 0.07 0.96 6.64 86.35 0.57 1.54 16 26 C 0.05 0.54 6.99 72.08 0.50 1.04 16 27 O -0.40 -5.15 10.74 -148.98 -1.60 -6.75 16 28 C 0.04 0.40 6.98 72.07 0.50 0.90 16 29 C 0.07 0.65 6.54 86.34 0.56 1.21 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 1.89 6.88 -2.39 -0.02 1.87 16 33 H 0.37 20.07 7.50 -92.71 -0.70 19.38 16 34 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 35 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.10 1.83 7.47 -2.39 -0.02 1.81 16 39 H 0.11 2.00 8.10 -2.39 -0.02 1.98 16 40 H 0.10 2.04 7.80 -2.39 -0.02 2.02 16 41 H 0.11 1.78 7.97 -2.39 -0.02 1.76 16 42 H 0.11 1.71 7.61 -2.39 -0.02 1.69 16 43 H 0.09 1.42 7.08 -2.39 -0.02 1.40 16 44 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 47 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.11 0.87 6.06 -2.39 -0.01 0.85 16 Total: -1.00 -72.92 398.39 1.06 -71.86 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: 0.24 Total: 32.45 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 6.76 Total: 16.72 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -6.27 Total: -127.57 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -1.69 Total: -40.77 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -72.92 1.06 -71.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331940286.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.152 kcal (2) G-P(sol) polarization free energy of solvation -72.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds