Wall clock time and date at job start Tue Mar 31 2020 23:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.51697 * 2 1 4 4 C 1.54874 * 109.49062 * 239.93202 * 2 1 3 5 5 C 1.47690 * 109.67744 * 170.14425 * 4 2 1 6 6 O 1.42559 * 113.66516 * 60.80097 * 5 4 2 7 7 C 1.40529 * 113.53844 * 272.24137 * 6 5 4 8 8 C 1.54667 * 110.01267 * 95.18796 * 7 6 5 9 9 N 1.44456 * 109.49830 * 120.07822 * 2 1 3 10 10 C 1.34773 * 118.51292 * 28.89093 * 9 2 1 11 11 O 1.21352 * 119.99905 * 355.66870 * 10 9 2 12 12 C 1.49456 * 120.00036 * 175.94889 * 10 9 2 13 13 O 1.21348 * 119.99775 * 85.63426 * 12 10 9 14 14 N 1.34771 * 119.99707 * 265.63702 * 12 10 9 15 15 C 1.47078 * 120.88443 * 354.69033 * 14 12 10 16 16 C 1.53699 * 108.28050 * 128.75272 * 15 14 12 17 17 N 1.46897 * 109.25107 * 54.08567 * 16 15 14 18 18 C 1.46902 * 110.99757 * 172.61172 * 17 16 15 19 19 C 1.50696 * 109.46945 * 294.29734 * 18 17 16 20 20 H 1.08002 * 120.00027 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00426 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99486 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00603 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47126 * 89.99797 * 23 21 19 25 25 H 1.48501 * 109.47323 * 209.99910 * 23 21 19 26 26 H 1.48499 * 109.46918 * 330.00290 * 23 21 19 27 27 C 1.46905 * 111.26952 * 296.75531 * 17 16 15 28 28 C 1.47077 * 120.87932 * 174.97064 * 14 12 10 29 29 H 1.09005 * 109.46469 * 282.12370 * 1 2 3 30 30 H 1.08997 * 109.47100 * 42.11795 * 1 2 3 31 31 H 1.09000 * 109.46884 * 162.12733 * 1 2 3 32 32 H 1.08998 * 109.43682 * 290.20168 * 4 2 1 33 33 H 1.08993 * 109.43987 * 50.08048 * 4 2 1 34 34 H 1.09000 * 108.64591 * 181.88065 * 5 4 2 35 35 H 1.09005 * 108.64215 * 299.85226 * 5 4 2 36 36 H 1.09003 * 109.40248 * 215.41157 * 7 6 5 37 37 H 1.09000 * 109.40747 * 335.16974 * 7 6 5 38 38 H 1.08995 * 109.43081 * 200.58176 * 8 7 6 39 39 H 1.09002 * 109.23724 * 81.08580 * 8 7 6 40 40 H 1.08993 * 109.63019 * 248.52639 * 15 14 12 41 41 H 1.09009 * 109.62715 * 9.10288 * 15 14 12 42 42 H 1.08999 * 109.64740 * 294.08628 * 16 15 14 43 43 H 1.08992 * 109.42264 * 173.94862 * 16 15 14 44 44 H 1.08994 * 109.47435 * 54.29774 * 18 17 16 45 45 H 1.09005 * 109.46929 * 174.30504 * 18 17 16 46 46 H 0.97002 * 119.99391 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.49178 * 303.14427 * 27 17 16 48 48 H 1.09004 * 109.51291 * 183.08325 * 27 17 16 49 49 H 1.08998 * 109.63369 * 350.89538 * 28 14 12 50 50 H 1.09003 * 109.62764 * 111.28427 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0468 -0.7315 -1.2635 5 6 3.5044 -0.5313 -1.3929 6 8 4.2521 -1.0426 -0.2921 7 6 4.4008 -0.1236 0.7606 8 6 3.3046 -0.3575 1.8263 9 7 2.0123 -0.6825 1.1784 10 6 1.2496 -1.6550 1.7159 11 8 0.1499 -1.8865 1.2580 12 6 1.7557 -2.4442 2.8798 13 8 1.6039 -2.0256 4.0087 14 7 2.3807 -3.6206 2.6756 15 6 2.4733 -4.2023 1.3279 16 6 3.9442 -4.5552 1.0553 17 7 4.4450 -5.4133 2.1373 18 6 5.7902 -5.9171 1.8298 19 6 5.7222 -6.8351 0.6366 20 1 4.7745 -7.0249 0.1547 21 6 6.8698 -7.4327 0.1602 22 7 8.0239 -7.2011 0.7468 23 14 6.7856 -8.5700 -1.3193 24 1 6.9780 -7.7805 -2.5622 25 1 7.8528 -9.5974 -1.2152 26 1 5.4590 -9.2363 -1.3566 27 6 4.4285 -4.7094 3.4266 28 6 2.9828 -4.3598 3.7955 29 1 -0.3632 0.2159 1.0048 30 1 -0.3633 0.7623 -0.6892 31 1 -0.3633 -0.9781 -0.3154 32 1 1.8332 -1.7970 -1.1786 33 1 1.5461 -0.3309 -2.1449 34 1 3.8443 -1.0240 -2.3038 35 1 3.7030 0.5369 -1.4805 36 1 5.3826 -0.2511 1.2166 37 1 4.3127 0.8906 0.3711 38 1 3.1875 0.5426 2.4297 39 1 3.6011 -1.1850 2.4709 40 1 1.8617 -5.1029 1.2750 41 1 2.1269 -3.4771 0.5915 42 1 4.5380 -3.6422 1.0107 43 1 4.0197 -5.0855 0.1061 44 1 6.4499 -5.0788 1.6060 45 1 6.1779 -6.4655 2.6884 46 1 8.8312 -7.6218 0.4118 47 1 5.0156 -3.7944 3.3490 48 1 4.8556 -5.3512 4.1973 49 1 2.9734 -3.7390 4.6913 50 1 2.4171 -5.2736 3.9774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336392424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:52 Heat of formation + Delta-G solvation = -73.914375 kcal Electronic energy + Delta-G solvation = -32605.887298 eV Core-core repulsion = 28441.605439 eV Total energy + Delta-G solvation = -4164.281859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.40489 -39.67472 -38.56653 -37.50566 -35.69143 -34.49890 -34.03098 -32.43881 -30.93393 -29.77614 -29.17702 -28.35955 -26.07478 -24.65600 -24.15143 -23.27459 -22.56569 -22.05874 -21.30505 -20.05563 -18.54334 -17.89197 -16.92381 -16.86580 -16.50182 -16.37417 -15.99411 -15.86151 -14.98792 -14.89823 -14.79705 -14.65829 -14.41966 -13.95041 -13.76995 -13.60143 -13.46972 -13.41177 -13.18138 -12.82418 -12.61074 -12.53221 -12.26121 -11.95219 -11.83184 -11.69586 -11.35731 -11.28896 -11.12588 -11.05840 -10.91214 -10.85097 -10.73366 -10.61936 -10.51278 -9.91900 -9.89193 -9.29102 -9.15212 -8.95171 -8.63768 -8.46530 -7.33985 -6.06446 -4.07976 2.00983 2.12464 2.61789 3.16768 3.29533 3.36288 3.40310 3.62176 4.05539 4.37149 4.38914 4.42221 4.57774 4.73500 4.77151 4.86248 4.97352 5.09370 5.19372 5.20961 5.28280 5.28845 5.35675 5.37745 5.40874 5.44564 5.53210 5.59513 5.62560 5.72536 5.78394 5.79694 5.92193 5.96287 6.07385 6.22364 6.39977 6.41724 6.48356 6.59073 6.86171 7.04580 7.19197 7.25244 7.29892 7.73139 7.73987 7.86108 8.00180 8.10934 8.46802 8.98980 9.56548 11.04379 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.003863 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.901328 B = 7247.012809 C = 8213.364097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.143 3.857 3 H 0.082 0.918 4 C -0.166 4.166 5 C 0.059 3.941 6 O -0.356 6.356 7 C 0.051 3.949 8 C 0.077 3.923 9 N -0.585 5.585 10 C 0.520 3.480 11 O -0.509 6.509 12 C 0.511 3.489 13 O -0.530 6.530 14 N -0.586 5.586 15 C 0.111 3.889 16 C 0.056 3.944 17 N -0.536 5.536 18 C 0.195 3.805 19 C -0.508 4.508 20 H 0.063 0.937 21 C 0.057 3.943 22 N -0.898 5.898 23 Si 0.897 3.103 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.273 1.273 27 C 0.043 3.957 28 C 0.116 3.884 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.097 0.903 44 H -0.008 1.008 45 H 0.032 0.968 46 H 0.261 0.739 47 H 0.027 0.973 48 H 0.084 0.916 49 H 0.089 0.911 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.529 17.331 -1.792 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.040 3.960 3 H 0.100 0.900 4 C -0.205 4.205 5 C -0.018 4.018 6 O -0.273 6.273 7 C -0.027 4.027 8 C -0.046 4.046 9 N -0.320 5.320 10 C 0.303 3.697 11 O -0.383 6.383 12 C 0.294 3.706 13 O -0.406 6.406 14 N -0.320 5.320 15 C -0.011 4.011 16 C -0.073 4.073 17 N -0.262 5.262 18 C 0.070 3.930 19 C -0.547 4.547 20 H 0.082 0.918 21 C -0.145 4.145 22 N -0.537 5.537 23 Si 0.725 3.275 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.197 1.197 27 C -0.087 4.087 28 C -0.006 4.006 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.053 0.947 43 H 0.115 0.885 44 H 0.010 0.990 45 H 0.050 0.950 46 H 0.071 0.929 47 H 0.045 0.955 48 H 0.102 0.898 49 H 0.108 0.892 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.221 16.804 -1.421 19.719 hybrid contribution 0.614 0.309 -0.805 1.059 sum -9.607 17.112 -2.226 19.750 Atomic orbital electron populations 1.22287 0.92525 1.03437 1.02137 1.21213 0.96070 0.95249 0.83509 0.90037 1.22097 0.96970 1.03055 0.98339 1.21604 0.91486 0.98574 0.90126 1.87624 1.72340 1.40092 1.27241 1.22928 0.98190 0.93021 0.88584 1.23015 0.82744 1.02719 0.96107 1.47793 1.19832 1.36179 1.28166 1.20385 0.85627 0.80786 0.82883 1.90804 1.19743 1.67709 1.60066 1.20258 0.78538 0.82288 0.89567 1.90770 1.56435 1.70500 1.22921 1.48277 1.53103 1.19939 1.10715 1.22179 0.99282 0.98459 0.81215 1.22356 0.91806 0.95945 0.97229 1.62089 1.29277 1.34754 1.00033 1.19711 0.81871 0.94243 0.97132 1.21126 0.93875 1.26890 1.12784 0.91848 1.24972 0.95328 0.96858 0.97298 1.69958 0.98580 1.44218 1.40969 0.86517 0.77817 0.80504 0.82708 1.20741 1.21279 1.19744 1.22395 0.94103 0.97342 0.94812 1.21907 0.94010 0.96140 0.88516 0.92228 0.93277 0.89329 0.90213 0.89184 0.89232 0.93269 0.88166 0.92337 0.90151 0.89444 0.90119 0.90649 0.94745 0.88490 0.98994 0.95043 0.92908 0.95467 0.89758 0.89249 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 7.75 37.16 0.29 -1.22 16 2 C 0.14 1.36 2.64 -68.03 -0.18 1.18 16 3 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 4 C -0.17 -1.46 5.27 -28.31 -0.15 -1.61 16 5 C 0.06 0.52 6.04 34.59 0.21 0.73 16 6 O -0.36 -4.15 10.23 -34.10 -0.35 -4.50 16 7 C 0.05 0.46 6.50 38.03 0.25 0.71 16 8 C 0.08 0.79 6.50 -2.24 -0.01 0.78 16 9 N -0.58 -6.86 2.52 -164.58 -0.41 -7.27 16 10 C 0.52 7.68 5.09 -11.58 -0.06 7.63 16 11 O -0.51 -8.25 13.02 5.49 0.07 -8.18 16 12 C 0.51 8.26 5.32 -11.58 -0.06 8.20 16 13 O -0.53 -9.62 16.58 5.50 0.09 -9.53 16 14 N -0.59 -9.20 3.00 -172.69 -0.52 -9.72 16 15 C 0.11 1.74 6.55 -3.36 -0.02 1.72 16 16 C 0.06 1.02 5.47 -3.46 -0.02 1.00 16 17 N -0.54 -10.85 4.62 -235.46 -1.09 -11.94 16 18 C 0.20 4.84 4.72 -4.98 -0.02 4.82 16 19 C -0.51 -13.67 8.41 -34.44 -0.29 -13.96 16 20 H 0.06 1.68 7.13 -52.49 -0.37 1.31 16 21 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 22 N -0.90 -25.97 13.29 55.43 0.74 -25.24 16 23 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 27 C 0.04 0.73 5.62 -3.70 -0.02 0.71 16 28 C 0.12 1.77 6.58 -3.60 -0.02 1.74 16 29 H 0.06 0.72 7.32 -51.93 -0.38 0.34 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 1.08 6.22 -51.93 -0.32 0.76 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.60 8.13 -51.93 -0.42 0.18 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.33 7.27 -51.93 -0.38 -0.05 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.39 7.20 -51.93 -0.37 0.01 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.08 6.28 -51.93 -0.33 0.76 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.12 6.37 -51.92 -0.33 0.79 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 1.92 6.67 -51.93 -0.35 1.58 16 44 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 45 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 46 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 47 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.08 1.38 7.99 -51.93 -0.41 0.97 16 49 H 0.09 1.30 7.10 -51.93 -0.37 0.93 16 50 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -32.15 385.48 -9.13 -41.28 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -8.23 Total: -0.64 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: -0.22 Total: 13.88 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -1.28 Total: -54.17 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.19 Total: -22.21 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.15 -9.13 -41.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336392424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.630 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds