Wall clock time and date at job start Tue Mar 31 2020 23:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.51697 * 2 1 4 4 C 1.54874 * 109.49062 * 239.93202 * 2 1 3 5 5 C 1.47690 * 109.67744 * 170.14425 * 4 2 1 6 6 O 1.42559 * 113.66516 * 60.80097 * 5 4 2 7 7 C 1.40529 * 113.53844 * 272.24137 * 6 5 4 8 8 C 1.54667 * 110.01267 * 95.18796 * 7 6 5 9 9 N 1.44456 * 109.49830 * 120.07822 * 2 1 3 10 10 C 1.34773 * 118.51292 * 28.89093 * 9 2 1 11 11 O 1.21352 * 119.99905 * 355.66870 * 10 9 2 12 12 C 1.49456 * 120.00036 * 175.94889 * 10 9 2 13 13 O 1.21348 * 119.99775 * 85.63426 * 12 10 9 14 14 N 1.34771 * 119.99707 * 265.63702 * 12 10 9 15 15 C 1.47078 * 120.88443 * 354.69033 * 14 12 10 16 16 C 1.53699 * 108.28050 * 128.75272 * 15 14 12 17 17 N 1.46897 * 109.25107 * 54.08567 * 16 15 14 18 18 C 1.46902 * 110.99757 * 172.61172 * 17 16 15 19 19 C 1.50696 * 109.46945 * 294.29734 * 18 17 16 20 20 H 1.08002 * 120.00027 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00426 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99486 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00603 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47126 * 89.99797 * 23 21 19 25 25 H 1.48501 * 109.47323 * 209.99910 * 23 21 19 26 26 H 1.48499 * 109.46918 * 330.00290 * 23 21 19 27 27 C 1.46905 * 111.26952 * 296.75531 * 17 16 15 28 28 C 1.47077 * 120.87932 * 174.97064 * 14 12 10 29 29 H 1.09005 * 109.46469 * 282.12370 * 1 2 3 30 30 H 1.08997 * 109.47100 * 42.11795 * 1 2 3 31 31 H 1.09000 * 109.46884 * 162.12733 * 1 2 3 32 32 H 1.08998 * 109.43682 * 290.20168 * 4 2 1 33 33 H 1.08993 * 109.43987 * 50.08048 * 4 2 1 34 34 H 1.09000 * 108.64591 * 181.88065 * 5 4 2 35 35 H 1.09005 * 108.64215 * 299.85226 * 5 4 2 36 36 H 1.09003 * 109.40248 * 215.41157 * 7 6 5 37 37 H 1.09000 * 109.40747 * 335.16974 * 7 6 5 38 38 H 1.08995 * 109.43081 * 200.58176 * 8 7 6 39 39 H 1.09002 * 109.23724 * 81.08580 * 8 7 6 40 40 H 1.08993 * 109.63019 * 248.52639 * 15 14 12 41 41 H 1.09009 * 109.62715 * 9.10288 * 15 14 12 42 42 H 1.08999 * 109.64740 * 294.08628 * 16 15 14 43 43 H 1.08992 * 109.42264 * 173.94862 * 16 15 14 44 44 H 1.08994 * 109.47435 * 54.29774 * 18 17 16 45 45 H 1.09005 * 109.46929 * 174.30504 * 18 17 16 46 46 H 0.97002 * 119.99391 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.49178 * 303.14427 * 27 17 16 48 48 H 1.09004 * 109.51291 * 183.08325 * 27 17 16 49 49 H 1.08998 * 109.63369 * 350.89538 * 28 14 12 50 50 H 1.09003 * 109.62764 * 111.28427 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0468 -0.7315 -1.2635 5 6 3.5044 -0.5313 -1.3929 6 8 4.2521 -1.0426 -0.2921 7 6 4.4008 -0.1236 0.7606 8 6 3.3046 -0.3575 1.8263 9 7 2.0123 -0.6825 1.1784 10 6 1.2496 -1.6550 1.7159 11 8 0.1499 -1.8865 1.2580 12 6 1.7557 -2.4442 2.8798 13 8 1.6039 -2.0256 4.0087 14 7 2.3807 -3.6206 2.6756 15 6 2.4733 -4.2023 1.3279 16 6 3.9442 -4.5552 1.0553 17 7 4.4450 -5.4133 2.1373 18 6 5.7902 -5.9171 1.8298 19 6 5.7222 -6.8351 0.6366 20 1 4.7745 -7.0249 0.1547 21 6 6.8698 -7.4327 0.1602 22 7 8.0239 -7.2011 0.7468 23 14 6.7856 -8.5700 -1.3193 24 1 6.9780 -7.7805 -2.5622 25 1 7.8528 -9.5974 -1.2152 26 1 5.4590 -9.2363 -1.3566 27 6 4.4285 -4.7094 3.4266 28 6 2.9828 -4.3598 3.7955 29 1 -0.3632 0.2159 1.0048 30 1 -0.3633 0.7623 -0.6892 31 1 -0.3633 -0.9781 -0.3154 32 1 1.8332 -1.7970 -1.1786 33 1 1.5461 -0.3309 -2.1449 34 1 3.8443 -1.0240 -2.3038 35 1 3.7030 0.5369 -1.4805 36 1 5.3826 -0.2511 1.2166 37 1 4.3127 0.8906 0.3711 38 1 3.1875 0.5426 2.4297 39 1 3.6011 -1.1850 2.4709 40 1 1.8617 -5.1029 1.2750 41 1 2.1269 -3.4771 0.5915 42 1 4.5380 -3.6422 1.0107 43 1 4.0197 -5.0855 0.1061 44 1 6.4499 -5.0788 1.6060 45 1 6.1779 -6.4655 2.6884 46 1 8.8312 -7.6218 0.4118 47 1 5.0156 -3.7944 3.3490 48 1 4.8556 -5.3512 4.1973 49 1 2.9734 -3.7390 4.6913 50 1 2.4171 -5.2736 3.9774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336392424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:51 Heat of formation + Delta-G solvation = -96.821581 kcal Electronic energy + Delta-G solvation = -32606.880629 eV Core-core repulsion = 28441.605439 eV Total energy + Delta-G solvation = -4165.275190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.48628 -40.80104 -39.60307 -38.93767 -36.63627 -36.10600 -34.83608 -34.40017 -32.33205 -30.64793 -30.09605 -29.93527 -27.70246 -25.92747 -25.04173 -24.69654 -23.79650 -23.18490 -22.50836 -21.38690 -19.73865 -18.95097 -18.47595 -18.05288 -17.82999 -17.43475 -16.96815 -16.77967 -16.61501 -16.09337 -16.02731 -15.98500 -15.62115 -15.40024 -15.35417 -14.98235 -14.41267 -14.36603 -14.15468 -14.12405 -13.94552 -13.59327 -13.43394 -13.29538 -13.05981 -12.80792 -12.64353 -12.59594 -12.55888 -12.44754 -12.35022 -12.21318 -12.03841 -11.95879 -11.75687 -11.57649 -11.27731 -10.68780 -10.59166 -10.27474 -10.01328 -9.85325 -9.05861 -8.17859 -6.27069 0.86991 0.92610 1.43996 1.45016 1.46273 1.56323 2.06724 2.42688 2.84584 3.00514 3.13727 3.20750 3.63156 3.67440 3.77866 3.85617 3.94737 4.01018 4.10209 4.17188 4.19672 4.33213 4.36584 4.40114 4.42791 4.51506 4.54728 4.63145 4.65784 4.73135 4.80114 4.81206 4.88789 4.93201 4.97584 5.02268 5.10969 5.19211 5.22338 5.25090 5.31486 5.54502 5.65956 5.88725 5.94935 6.05611 6.27319 6.37548 6.56219 6.58019 6.67776 6.87941 7.42491 8.93249 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.003863 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.901328 B = 7247.012809 C = 8213.364097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.137 3.863 3 H 0.115 0.885 4 C -0.159 4.159 5 C 0.053 3.947 6 O -0.389 6.389 7 C 0.052 3.948 8 C 0.073 3.927 9 N -0.575 5.575 10 C 0.516 3.484 11 O -0.530 6.530 12 C 0.511 3.489 13 O -0.552 6.552 14 N -0.588 5.588 15 C 0.127 3.873 16 C 0.066 3.934 17 N -0.540 5.540 18 C 0.212 3.788 19 C -0.521 4.521 20 H 0.065 0.935 21 C 0.005 3.995 22 N -0.934 5.934 23 Si 0.965 3.035 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.265 1.265 27 C 0.046 3.954 28 C 0.123 3.877 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.026 0.974 43 H 0.081 0.919 44 H -0.036 1.036 45 H 0.009 0.991 46 H 0.264 0.736 47 H 0.024 0.976 48 H 0.090 0.910 49 H 0.100 0.900 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.274 18.810 -3.184 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.035 3.965 3 H 0.133 0.867 4 C -0.197 4.197 5 C -0.023 4.023 6 O -0.308 6.308 7 C -0.026 4.026 8 C -0.049 4.049 9 N -0.309 5.309 10 C 0.298 3.702 11 O -0.407 6.407 12 C 0.295 3.705 13 O -0.430 6.430 14 N -0.321 5.321 15 C 0.004 3.996 16 C -0.063 4.063 17 N -0.265 5.265 18 C 0.086 3.914 19 C -0.559 4.559 20 H 0.083 0.917 21 C -0.193 4.193 22 N -0.574 5.574 23 Si 0.790 3.210 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.189 1.189 27 C -0.083 4.083 28 C 0.002 3.998 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.135 0.865 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.044 0.956 43 H 0.099 0.901 44 H -0.019 1.019 45 H 0.027 0.973 46 H 0.072 0.928 47 H 0.043 0.957 48 H 0.108 0.892 49 H 0.118 0.882 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.968 18.311 -2.822 21.530 hybrid contribution 0.856 -0.082 -0.341 0.925 sum -10.112 18.229 -3.164 21.084 Atomic orbital electron populations 1.22166 0.93103 1.03031 1.01449 1.21516 0.95635 0.96682 0.82694 0.86745 1.22062 0.97379 1.01299 0.98976 1.21761 0.90962 1.00300 0.89273 1.87595 1.72925 1.41821 1.28413 1.23031 0.97509 0.94271 0.87776 1.23177 0.82478 1.02636 0.96599 1.47926 1.19707 1.34932 1.28312 1.20210 0.85746 0.81524 0.82719 1.90815 1.20541 1.68613 1.60694 1.20601 0.77943 0.82102 0.89884 1.90746 1.57396 1.70880 1.23976 1.48305 1.53085 1.20040 1.10667 1.21990 0.97138 0.98882 0.81591 1.22223 0.93347 0.94817 0.95926 1.61999 1.26427 1.36293 1.01826 1.19343 0.83597 0.92843 0.95664 1.21433 0.94001 1.27091 1.13358 0.91730 1.25837 0.94901 0.98383 1.00171 1.70082 0.99302 1.45400 1.42626 0.85448 0.78014 0.78409 0.79163 1.19860 1.21020 1.18924 1.22427 0.95626 0.96955 0.93273 1.21855 0.92570 0.96679 0.88721 0.94326 0.90395 0.91631 0.93095 0.86515 0.89331 0.90276 0.88122 0.89026 0.87856 0.91964 0.89702 0.89698 0.95561 0.90116 1.01870 0.97335 0.92764 0.95733 0.89218 0.88180 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 7.75 71.99 0.56 -2.08 16 2 C 0.14 2.25 2.64 46.02 0.12 2.37 16 3 H 0.11 1.20 8.10 -2.39 -0.02 1.18 16 4 C -0.16 -2.44 5.27 29.57 0.16 -2.28 16 5 C 0.05 0.80 6.04 70.32 0.43 1.22 16 6 O -0.39 -8.55 10.23 -144.94 -1.48 -10.04 16 7 C 0.05 0.83 6.50 72.55 0.47 1.30 16 8 C 0.07 1.40 6.50 86.62 0.56 1.96 16 9 N -0.58 -12.68 2.52 -792.96 -2.00 -14.68 16 10 C 0.52 15.02 5.09 87.27 0.44 15.46 16 11 O -0.53 -17.17 13.02 -3.25 -0.04 -17.21 16 12 C 0.51 16.41 5.32 87.27 0.46 16.87 16 13 O -0.55 -19.90 16.58 -3.24 -0.05 -19.95 16 14 N -0.59 -18.31 3.00 -818.62 -2.46 -20.76 16 15 C 0.13 3.95 6.55 86.50 0.57 4.52 16 16 C 0.07 2.45 5.47 86.54 0.47 2.92 16 17 N -0.54 -22.29 4.62 -898.87 -4.15 -26.44 16 18 C 0.21 10.86 4.72 85.56 0.40 11.26 16 19 C -0.52 -28.45 8.41 25.60 0.22 -28.24 16 20 H 0.06 3.45 7.13 -2.91 -0.02 3.43 16 21 C 0.01 0.29 5.46 84.65 0.46 0.75 16 22 N -0.93 -54.93 13.29 21.45 0.28 -54.64 16 23 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 27 C 0.05 1.58 5.62 86.38 0.49 2.07 16 28 C 0.12 3.70 6.58 86.35 0.57 4.27 16 29 H 0.04 0.89 7.32 -2.38 -0.02 0.87 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.56 6.22 -2.39 -0.01 1.54 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.12 1.17 8.13 -2.39 -0.02 1.15 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 0.72 7.27 -2.38 -0.02 0.71 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 0.84 7.20 -2.39 -0.02 0.83 16 38 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 1.52 6.28 -2.39 -0.01 1.51 16 40 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.08 2.53 6.37 -2.38 -0.02 2.51 16 42 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 3.27 6.67 -2.39 -0.02 3.25 16 44 H -0.04 -2.05 8.12 -2.39 -0.02 -2.07 16 45 H 0.01 0.47 7.97 -2.38 -0.02 0.45 16 46 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 47 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.09 2.97 7.99 -2.39 -0.02 2.95 16 49 H 0.10 2.84 7.10 -2.39 -0.02 2.82 16 50 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -70.90 385.48 -0.57 -71.47 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.93 Total: 14.62 kcal Atomic # 6 Polarization: 26.00 SS G_CDS: 6.38 Total: 32.38 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -8.32 Total: -116.52 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -1.58 Total: -47.20 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -70.90 -0.57 -71.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336392424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.355 kcal (2) G-P(sol) polarization free energy of solvation -70.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds