Wall clock time and date at job start Tue Mar 31 2020 23:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.86113 * 2 1 4 4 C 1.46917 * 109.87524 * 120.98931 * 2 1 3 5 5 C 1.52681 * 113.61903 * 177.43800 * 4 2 1 6 6 O 1.39708 * 106.09139 * 271.72039 * 5 4 2 7 7 C 1.44965 * 115.12898 * 98.23152 * 6 5 4 8 8 C 1.54420 * 110.75874 * 320.84277 * 7 6 5 9 9 N 1.43752 * 115.49025 * 318.58330 * 8 7 6 10 10 C 1.34772 * 120.42972 * 267.81314 * 9 8 7 11 11 O 1.21347 * 120.00235 * 184.37169 * 10 9 8 12 12 C 1.49456 * 120.00201 * 4.37478 * 10 9 8 13 13 O 1.21355 * 119.99770 * 85.44143 * 12 10 9 14 14 N 1.34776 * 120.00107 * 265.44574 * 12 10 9 15 15 C 1.47079 * 120.87739 * 355.10474 * 14 12 10 16 16 C 1.53705 * 108.27406 * 128.75360 * 15 14 12 17 17 N 1.46904 * 109.25555 * 54.08175 * 16 15 14 18 18 C 1.46898 * 110.99854 * 172.60385 * 17 16 15 19 19 C 1.50700 * 109.47600 * 294.30270 * 18 17 16 20 20 H 1.08006 * 119.99504 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00398 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99798 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00084 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47399 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47256 * 120.00585 * 23 21 19 26 26 H 1.48508 * 109.47277 * 240.00011 * 23 21 19 27 27 C 1.46896 * 111.26915 * 296.75640 * 17 16 15 28 28 C 1.47072 * 120.88184 * 175.38079 * 14 12 10 29 29 H 1.08999 * 109.47489 * 305.65147 * 1 2 3 30 30 H 1.09001 * 109.47309 * 185.65167 * 1 2 3 31 31 H 1.08998 * 109.47393 * 65.65246 * 1 2 3 32 32 H 1.08998 * 108.65208 * 298.51329 * 4 2 1 33 33 H 1.09010 * 108.65090 * 56.50568 * 4 2 1 34 34 H 1.09000 * 110.12049 * 30.86646 * 5 4 2 35 35 H 1.09004 * 110.11937 * 152.57726 * 5 4 2 36 36 H 1.08989 * 109.21950 * 81.17211 * 7 6 5 37 37 H 1.08997 * 109.22027 * 200.55766 * 7 6 5 38 38 H 1.08998 * 108.27757 * 80.14389 * 8 7 6 39 39 H 1.09005 * 108.27348 * 197.21530 * 8 7 6 40 40 H 1.08999 * 109.62627 * 248.51896 * 15 14 12 41 41 H 1.09002 * 109.63269 * 9.10714 * 15 14 12 42 42 H 1.08997 * 109.64631 * 294.07551 * 16 15 14 43 43 H 1.09001 * 109.41643 * 173.94297 * 16 15 14 44 44 H 1.09005 * 109.46986 * 54.30124 * 18 17 16 45 45 H 1.08997 * 109.47174 * 174.29889 * 18 17 16 46 46 H 0.96997 * 119.99759 * 179.97438 * 22 21 19 47 47 H 1.09007 * 109.49183 * 303.14638 * 27 17 16 48 48 H 1.08999 * 109.51877 * 183.08324 * 27 17 16 49 49 H 1.08998 * 109.63435 * 350.89561 * 28 14 12 50 50 H 1.08996 * 109.63406 * 111.47891 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9003 1.0252 0.0000 4 6 2.0295 -0.7114 1.1844 5 6 3.5517 -0.8166 1.2381 6 8 3.8840 -1.9827 0.5442 7 6 4.2984 -1.7841 -0.8306 8 6 3.4451 -0.6890 -1.5067 9 7 2.0395 -0.7273 -1.2077 10 6 1.1909 -1.4087 -2.0027 11 8 -0.0031 -1.3710 -1.7891 12 6 1.7203 -2.2109 -3.1472 13 8 2.0984 -3.3498 -2.9664 14 7 1.7778 -1.6695 -4.3801 15 6 1.2272 -0.3312 -4.6432 16 6 2.3053 0.5021 -5.3545 17 7 2.7708 -0.2225 -6.5446 18 6 3.6726 0.6121 -7.3497 19 6 2.9071 1.7828 -7.9104 20 1 1.8556 1.8954 -7.6909 21 6 3.5490 2.7102 -8.7034 22 7 4.8293 2.5727 -8.9711 23 14 2.5999 4.1609 -9.3989 24 1 1.1851 4.0862 -8.9538 25 1 3.2050 5.4271 -8.9131 26 1 2.6552 4.1233 -10.8825 27 6 3.4143 -1.4912 -6.1782 28 6 2.3873 -2.4036 -5.4993 29 1 -0.3634 0.5990 0.8350 30 1 -0.3634 -1.0227 0.1012 31 1 -0.3634 0.4237 -0.9362 32 1 1.6844 -0.1885 2.0764 33 1 1.6120 -1.7184 1.1881 34 1 4.0046 0.0492 0.7550 35 1 3.8864 -0.8878 2.2731 36 1 5.3464 -1.4853 -0.8499 37 1 4.1817 -2.7187 -1.3792 38 1 3.8329 0.2832 -1.2024 39 1 3.5649 -0.7802 -2.5863 40 1 0.3466 -0.4163 -5.2798 41 1 0.9568 0.1453 -3.7009 42 1 3.1442 0.6693 -4.6791 43 1 1.8826 1.4610 -5.6547 44 1 4.4865 0.9767 -6.7230 45 1 4.0817 0.0199 -8.1682 46 1 5.2807 3.2249 -9.5293 47 1 4.2379 -1.2962 -5.4913 48 1 3.7966 -1.9780 -7.0754 49 1 2.8842 -3.2979 -5.1233 50 1 1.6161 -2.6841 -6.2166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336392426.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:55 Heat of formation + Delta-G solvation = -73.771638 kcal Electronic energy + Delta-G solvation = -32046.511077 eV Core-core repulsion = 27882.235408 eV Total energy + Delta-G solvation = -4164.275669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43378 -39.74573 -38.53425 -37.59661 -35.85007 -34.60447 -34.22821 -32.51701 -31.01572 -29.56606 -29.14588 -28.46268 -26.17334 -24.67276 -24.55965 -23.43602 -22.67342 -21.80079 -21.30598 -20.12810 -18.67045 -17.80732 -17.43615 -16.88143 -16.51155 -16.29851 -16.05945 -15.60913 -15.37093 -14.92739 -14.83374 -14.79202 -14.53492 -14.03124 -13.90966 -13.74728 -13.58895 -13.52487 -12.91946 -12.80666 -12.71607 -12.37914 -12.25913 -12.04470 -12.01098 -11.78979 -11.53396 -11.41493 -11.21209 -11.15967 -10.96624 -10.87377 -10.80261 -10.69795 -10.59086 -9.98388 -9.85845 -9.36570 -9.17795 -9.03731 -8.72234 -8.54420 -7.46120 -6.14018 -4.16279 1.96326 2.02366 2.49157 3.13219 3.23655 3.32087 3.35873 3.56432 4.02102 4.31998 4.33997 4.42238 4.44280 4.64975 4.71181 4.79667 4.93981 5.01907 5.08990 5.15946 5.19944 5.24647 5.25461 5.29917 5.35188 5.42655 5.49491 5.54646 5.61735 5.62706 5.67937 5.76743 5.86794 5.92169 6.02406 6.12980 6.28596 6.30264 6.31656 6.44927 6.85709 7.05017 7.09370 7.14542 7.19999 7.64200 7.65474 7.79860 7.90129 8.01041 8.37016 8.91176 9.48957 10.96706 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.003098 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.868216 B = 9035.171335 C = 9319.038434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.148 3.852 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.064 3.936 6 O -0.378 6.378 7 C 0.043 3.957 8 C 0.068 3.932 9 N -0.587 5.587 10 C 0.524 3.476 11 O -0.505 6.505 12 C 0.510 3.490 13 O -0.520 6.520 14 N -0.591 5.591 15 C 0.108 3.892 16 C 0.053 3.947 17 N -0.535 5.535 18 C 0.194 3.806 19 C -0.511 4.511 20 H 0.065 0.935 21 C 0.057 3.943 22 N -0.897 5.897 23 Si 0.897 3.103 24 H -0.271 1.271 25 H -0.285 1.285 26 H -0.283 1.283 27 C 0.042 3.958 28 C 0.116 3.884 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.025 0.975 43 H 0.100 0.900 44 H -0.008 1.008 45 H 0.033 0.967 46 H 0.262 0.738 47 H 0.027 0.973 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 -4.609 18.784 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.048 3.952 3 H 0.103 0.897 4 C -0.211 4.211 5 C -0.013 4.013 6 O -0.297 6.297 7 C -0.035 4.035 8 C -0.057 4.057 9 N -0.323 5.323 10 C 0.307 3.693 11 O -0.380 6.380 12 C 0.292 3.708 13 O -0.396 6.396 14 N -0.325 5.325 15 C -0.015 4.015 16 C -0.076 4.076 17 N -0.260 5.260 18 C 0.070 3.930 19 C -0.550 4.550 20 H 0.083 0.917 21 C -0.145 4.145 22 N -0.536 5.536 23 Si 0.725 3.275 24 H -0.196 1.196 25 H -0.211 1.211 26 H -0.209 1.209 27 C -0.087 4.087 28 C -0.006 4.006 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.043 0.957 43 H 0.118 0.882 44 H 0.010 0.990 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.045 0.955 48 H 0.104 0.896 49 H 0.109 0.891 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.110 -5.399 18.674 19.686 hybrid contribution 0.477 1.346 -0.194 1.441 sum -2.632 -4.053 18.481 19.102 Atomic orbital electron populations 1.22206 0.91754 1.03780 1.02000 1.20871 0.96606 0.94958 0.82747 0.89704 1.21680 0.97914 1.03116 0.98422 1.22047 0.93413 0.88690 0.97168 1.87704 1.87245 1.31028 1.23688 1.23839 0.96922 1.00347 0.82363 1.21890 0.81272 1.00630 1.01905 1.48104 1.06843 1.50002 1.27340 1.20328 0.86851 0.78538 0.83538 1.90842 1.14761 1.60619 1.71729 1.20329 0.78996 0.87612 0.83874 1.90781 1.47674 1.17243 1.83866 1.48331 1.57352 1.18709 1.08146 1.22206 0.97974 0.80968 1.00336 1.22409 0.95930 0.97920 0.91327 1.62073 1.41483 1.04436 1.18042 1.19735 0.90065 0.91621 0.91621 1.21165 0.96350 1.07052 1.30391 0.91723 1.24984 0.94899 0.98295 0.96312 1.69960 1.09196 1.36319 1.38131 0.86450 0.80087 0.82058 0.78882 1.19595 1.21109 1.20948 1.22419 0.94363 0.92724 0.99229 1.21913 0.96754 0.94942 0.86980 0.93004 0.90496 0.90931 0.90050 0.90051 0.92528 0.89455 0.91024 0.88391 0.89541 0.89441 0.89690 0.90650 0.95700 0.88157 0.99042 0.94889 0.92871 0.95468 0.89595 0.89088 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 7.60 37.16 0.28 -1.14 16 2 C 0.15 1.37 3.18 -68.94 -0.22 1.15 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 4 C -0.17 -1.45 4.66 -29.81 -0.14 -1.58 16 5 C 0.06 0.52 6.46 36.99 0.24 0.75 16 6 O -0.38 -4.22 10.19 -32.13 -0.33 -4.55 16 7 C 0.04 0.43 7.28 37.90 0.28 0.71 16 8 C 0.07 0.68 4.80 -4.75 -0.02 0.66 16 9 N -0.59 -6.73 2.70 -168.47 -0.46 -7.19 16 10 C 0.52 7.55 5.43 -11.58 -0.06 7.48 16 11 O -0.51 -8.07 12.65 5.50 0.07 -8.00 16 12 C 0.51 7.90 5.67 -11.58 -0.07 7.83 16 13 O -0.52 -9.19 16.46 5.49 0.09 -9.10 16 14 N -0.59 -8.70 2.98 -172.69 -0.51 -9.22 16 15 C 0.11 1.55 6.55 -3.36 -0.02 1.53 16 16 C 0.05 0.90 5.47 -3.46 -0.02 0.88 16 17 N -0.54 -10.30 4.62 -235.46 -1.09 -11.39 16 18 C 0.19 4.65 4.72 -4.98 -0.02 4.62 16 19 C -0.51 -13.35 8.41 -34.44 -0.29 -13.64 16 20 H 0.06 1.67 7.13 -52.48 -0.37 1.29 16 21 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 22 N -0.90 -25.39 13.29 55.43 0.74 -24.65 16 23 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 28 C 0.12 1.67 6.58 -3.61 -0.02 1.64 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.95 6.64 -51.93 -0.34 0.60 16 31 H 0.07 0.85 6.93 -51.93 -0.36 0.49 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.88 7.91 -51.92 -0.41 0.47 16 34 H 0.06 0.38 6.34 -51.93 -0.33 0.05 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.57 8.14 -51.94 -0.42 0.15 16 37 H 0.10 1.16 8.03 -51.93 -0.42 0.74 16 38 H 0.09 0.68 7.08 -51.93 -0.37 0.31 16 39 H 0.09 0.98 6.82 -51.93 -0.35 0.63 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.08 1.00 6.37 -51.93 -0.33 0.67 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 1.83 6.67 -51.93 -0.35 1.49 16 44 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 45 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 46 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.09 1.34 7.99 -51.93 -0.41 0.93 16 49 H 0.09 1.26 7.09 -51.93 -0.37 0.89 16 50 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -31.40 384.31 -9.12 -40.52 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -8.19 Total: -0.77 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -0.21 Total: 12.99 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -1.32 Total: -52.45 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.17 Total: -21.65 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.40 -9.12 -40.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336392426.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.252 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds