Wall clock time and date at job start Tue Mar 31 2020 23:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.86113 * 2 1 4 4 C 1.46917 * 109.87524 * 120.98931 * 2 1 3 5 5 C 1.52681 * 113.61903 * 177.43800 * 4 2 1 6 6 O 1.39708 * 106.09139 * 271.72039 * 5 4 2 7 7 C 1.44965 * 115.12898 * 98.23152 * 6 5 4 8 8 C 1.54420 * 110.75874 * 320.84277 * 7 6 5 9 9 N 1.43752 * 115.49025 * 318.58330 * 8 7 6 10 10 C 1.34772 * 120.42972 * 267.81314 * 9 8 7 11 11 O 1.21347 * 120.00235 * 184.37169 * 10 9 8 12 12 C 1.49456 * 120.00201 * 4.37478 * 10 9 8 13 13 O 1.21355 * 119.99770 * 85.44143 * 12 10 9 14 14 N 1.34776 * 120.00107 * 265.44574 * 12 10 9 15 15 C 1.47079 * 120.87739 * 355.10474 * 14 12 10 16 16 C 1.53705 * 108.27406 * 128.75360 * 15 14 12 17 17 N 1.46904 * 109.25555 * 54.08175 * 16 15 14 18 18 C 1.46898 * 110.99854 * 172.60385 * 17 16 15 19 19 C 1.50700 * 109.47600 * 294.30270 * 18 17 16 20 20 H 1.08006 * 119.99504 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00398 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99798 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00084 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47399 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47256 * 120.00585 * 23 21 19 26 26 H 1.48508 * 109.47277 * 240.00011 * 23 21 19 27 27 C 1.46896 * 111.26915 * 296.75640 * 17 16 15 28 28 C 1.47072 * 120.88184 * 175.38079 * 14 12 10 29 29 H 1.08999 * 109.47489 * 305.65147 * 1 2 3 30 30 H 1.09001 * 109.47309 * 185.65167 * 1 2 3 31 31 H 1.08998 * 109.47393 * 65.65246 * 1 2 3 32 32 H 1.08998 * 108.65208 * 298.51329 * 4 2 1 33 33 H 1.09010 * 108.65090 * 56.50568 * 4 2 1 34 34 H 1.09000 * 110.12049 * 30.86646 * 5 4 2 35 35 H 1.09004 * 110.11937 * 152.57726 * 5 4 2 36 36 H 1.08989 * 109.21950 * 81.17211 * 7 6 5 37 37 H 1.08997 * 109.22027 * 200.55766 * 7 6 5 38 38 H 1.08998 * 108.27757 * 80.14389 * 8 7 6 39 39 H 1.09005 * 108.27348 * 197.21530 * 8 7 6 40 40 H 1.08999 * 109.62627 * 248.51896 * 15 14 12 41 41 H 1.09002 * 109.63269 * 9.10714 * 15 14 12 42 42 H 1.08997 * 109.64631 * 294.07551 * 16 15 14 43 43 H 1.09001 * 109.41643 * 173.94297 * 16 15 14 44 44 H 1.09005 * 109.46986 * 54.30124 * 18 17 16 45 45 H 1.08997 * 109.47174 * 174.29889 * 18 17 16 46 46 H 0.96997 * 119.99759 * 179.97438 * 22 21 19 47 47 H 1.09007 * 109.49183 * 303.14638 * 27 17 16 48 48 H 1.08999 * 109.51877 * 183.08324 * 27 17 16 49 49 H 1.08998 * 109.63435 * 350.89561 * 28 14 12 50 50 H 1.08996 * 109.63406 * 111.47891 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9003 1.0252 0.0000 4 6 2.0295 -0.7114 1.1844 5 6 3.5517 -0.8166 1.2381 6 8 3.8840 -1.9827 0.5442 7 6 4.2984 -1.7841 -0.8306 8 6 3.4451 -0.6890 -1.5067 9 7 2.0395 -0.7273 -1.2077 10 6 1.1909 -1.4087 -2.0027 11 8 -0.0031 -1.3710 -1.7891 12 6 1.7203 -2.2109 -3.1472 13 8 2.0984 -3.3498 -2.9664 14 7 1.7778 -1.6695 -4.3801 15 6 1.2272 -0.3312 -4.6432 16 6 2.3053 0.5021 -5.3545 17 7 2.7708 -0.2225 -6.5446 18 6 3.6726 0.6121 -7.3497 19 6 2.9071 1.7828 -7.9104 20 1 1.8556 1.8954 -7.6909 21 6 3.5490 2.7102 -8.7034 22 7 4.8293 2.5727 -8.9711 23 14 2.5999 4.1609 -9.3989 24 1 1.1851 4.0862 -8.9538 25 1 3.2050 5.4271 -8.9131 26 1 2.6552 4.1233 -10.8825 27 6 3.4143 -1.4912 -6.1782 28 6 2.3873 -2.4036 -5.4993 29 1 -0.3634 0.5990 0.8350 30 1 -0.3634 -1.0227 0.1012 31 1 -0.3634 0.4237 -0.9362 32 1 1.6844 -0.1885 2.0764 33 1 1.6120 -1.7184 1.1881 34 1 4.0046 0.0492 0.7550 35 1 3.8864 -0.8878 2.2731 36 1 5.3464 -1.4853 -0.8499 37 1 4.1817 -2.7187 -1.3792 38 1 3.8329 0.2832 -1.2024 39 1 3.5649 -0.7802 -2.5863 40 1 0.3466 -0.4163 -5.2798 41 1 0.9568 0.1453 -3.7009 42 1 3.1442 0.6693 -4.6791 43 1 1.8826 1.4610 -5.6547 44 1 4.4865 0.9767 -6.7230 45 1 4.0817 0.0199 -8.1682 46 1 5.2807 3.2249 -9.5293 47 1 4.2379 -1.2962 -5.4913 48 1 3.7966 -1.9780 -7.0754 49 1 2.8842 -3.2979 -5.1233 50 1 1.6161 -2.6841 -6.2166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336392426.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:54 Heat of formation + Delta-G solvation = -96.046309 kcal Electronic energy + Delta-G solvation = -32047.476980 eV Core-core repulsion = 27882.235408 eV Total energy + Delta-G solvation = -4165.241572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.47660 -40.81643 -39.55751 -38.95578 -36.74580 -36.12135 -35.04887 -34.40771 -32.31979 -30.45125 -30.03918 -29.92243 -27.73837 -25.95687 -25.29065 -24.77362 -23.93903 -23.11366 -22.21863 -21.37819 -19.79335 -18.88656 -18.48643 -18.33934 -17.88736 -17.35141 -16.95549 -16.72564 -16.43442 -16.31419 -16.03909 -15.94000 -15.78613 -15.45643 -15.37263 -15.02108 -14.52497 -14.37474 -14.25781 -14.05069 -13.71834 -13.59261 -13.51454 -13.09204 -13.07758 -12.81352 -12.76760 -12.65179 -12.53176 -12.46127 -12.36164 -12.26176 -12.19081 -12.01900 -11.77210 -11.52952 -11.27047 -10.60592 -10.59104 -10.28688 -10.01631 -9.92148 -9.06360 -8.18877 -6.28151 0.85220 0.92289 1.34488 1.43209 1.45736 1.57509 2.07520 2.42075 2.79769 2.99880 3.12894 3.19433 3.60241 3.63083 3.70710 3.80262 3.93209 4.02933 4.10563 4.12556 4.17403 4.27677 4.30527 4.36917 4.41263 4.47014 4.57017 4.60923 4.64390 4.70284 4.80454 4.81200 4.88892 4.90150 4.95914 5.05092 5.11534 5.16673 5.20710 5.28596 5.31224 5.48173 5.65721 5.91794 5.94729 6.05010 6.26990 6.34520 6.55758 6.57340 6.60867 6.87856 7.41946 8.92196 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.003098 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.868216 B = 9035.171335 C = 9319.038434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.144 3.856 3 H 0.117 0.883 4 C -0.168 4.168 5 C 0.059 3.941 6 O -0.403 6.403 7 C 0.045 3.955 8 C 0.064 3.936 9 N -0.581 5.581 10 C 0.520 3.480 11 O -0.528 6.528 12 C 0.510 3.490 13 O -0.546 6.546 14 N -0.589 5.589 15 C 0.121 3.879 16 C 0.058 3.942 17 N -0.542 5.542 18 C 0.210 3.790 19 C -0.520 4.520 20 H 0.067 0.933 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.964 3.036 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.283 1.283 27 C 0.046 3.954 28 C 0.123 3.877 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.110 0.890 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.029 0.971 43 H 0.087 0.913 44 H -0.033 1.033 45 H 0.007 0.993 46 H 0.263 0.737 47 H 0.028 0.972 48 H 0.088 0.912 49 H 0.099 0.901 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.807 -3.063 20.343 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.045 3.955 3 H 0.135 0.865 4 C -0.206 4.206 5 C -0.018 4.018 6 O -0.322 6.322 7 C -0.032 4.032 8 C -0.061 4.061 9 N -0.315 5.315 10 C 0.303 3.697 11 O -0.404 6.404 12 C 0.293 3.707 13 O -0.423 6.423 14 N -0.323 5.323 15 C -0.002 4.002 16 C -0.071 4.071 17 N -0.267 5.267 18 C 0.084 3.916 19 C -0.559 4.559 20 H 0.085 0.915 21 C -0.193 4.193 22 N -0.574 5.574 23 Si 0.790 3.210 24 H -0.185 1.185 25 H -0.206 1.206 26 H -0.209 1.209 27 C -0.083 4.083 28 C 0.002 3.998 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.128 0.872 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.136 0.864 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.047 0.953 43 H 0.105 0.895 44 H -0.015 1.015 45 H 0.026 0.974 46 H 0.072 0.928 47 H 0.046 0.954 48 H 0.106 0.894 49 H 0.117 0.883 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.530 -3.847 20.263 20.925 hybrid contribution 0.636 0.824 -0.608 1.205 sum -2.894 -3.023 19.656 20.096 Atomic orbital electron populations 1.22089 0.92556 1.02369 1.02188 1.21179 0.96048 0.96328 0.81911 0.86507 1.21626 0.98273 1.01541 0.99140 1.22289 0.93019 0.88424 0.98024 1.87685 1.87496 1.33030 1.23978 1.23797 0.98192 0.99161 0.82026 1.22050 0.80500 1.02250 1.01256 1.48269 1.07171 1.48797 1.27252 1.20186 0.86896 0.78932 0.83703 1.90849 1.15564 1.61691 1.72324 1.20631 0.78354 0.87421 0.84254 1.90762 1.48904 1.18419 1.84263 1.48362 1.57079 1.18758 1.08128 1.22082 0.96851 0.80443 1.00774 1.22359 0.96577 0.97614 0.90527 1.61961 1.40524 1.04925 1.19289 1.19361 0.89820 0.91339 0.91060 1.21484 0.96546 1.07656 1.30167 0.91519 1.25832 0.95707 1.01091 0.96713 1.70080 1.10797 1.37487 1.39039 0.85404 0.79123 0.78646 0.77869 1.18547 1.20589 1.20928 1.22432 0.94819 0.91487 0.99562 1.21846 0.96471 0.94605 0.86918 0.90284 0.93255 0.92614 0.87179 0.93144 0.90520 0.87712 0.88638 0.90991 0.86388 0.90752 0.89482 0.89074 0.95330 0.89463 1.01519 0.97447 0.92774 0.95362 0.89371 0.88291 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 7.60 71.98 0.55 -1.99 16 2 C 0.14 2.29 3.18 42.44 0.13 2.43 16 3 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.17 -2.38 4.66 28.60 0.13 -2.25 16 5 C 0.06 0.77 6.46 71.88 0.46 1.24 16 6 O -0.40 -8.40 10.19 -137.89 -1.40 -9.80 16 7 C 0.05 0.86 7.28 72.46 0.53 1.39 16 8 C 0.06 1.16 4.80 87.37 0.42 1.58 16 9 N -0.58 -12.43 2.70 -805.27 -2.18 -14.61 16 10 C 0.52 14.72 5.43 87.27 0.47 15.20 16 11 O -0.53 -16.83 12.65 -3.24 -0.04 -16.87 16 12 C 0.51 15.69 5.67 87.27 0.49 16.19 16 13 O -0.55 -19.47 16.46 -3.26 -0.05 -19.52 16 14 N -0.59 -16.97 2.98 -818.62 -2.44 -19.41 16 15 C 0.12 3.35 6.55 86.51 0.57 3.92 16 16 C 0.06 1.93 5.47 86.54 0.47 2.40 16 17 N -0.54 -20.88 4.62 -898.85 -4.15 -25.04 16 18 C 0.21 10.27 4.72 85.56 0.40 10.67 16 19 C -0.52 -27.29 8.41 25.60 0.22 -27.07 16 20 H 0.07 3.41 7.13 -2.91 -0.02 3.38 16 21 C 0.00 0.26 5.46 84.65 0.46 0.72 16 22 N -0.93 -53.48 13.29 21.45 0.28 -53.19 16 23 Si 0.96 41.96 29.54 68.60 2.03 43.99 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 27 C 0.05 1.47 5.62 86.38 0.49 1.95 16 28 C 0.12 3.47 6.58 86.35 0.57 4.04 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.21 6.64 -2.39 -0.02 1.19 16 31 H 0.05 1.24 6.93 -2.39 -0.02 1.22 16 32 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 1.06 7.91 -2.38 -0.02 1.04 16 34 H 0.08 0.70 6.34 -2.39 -0.02 0.68 16 35 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.73 8.03 -2.39 -0.02 1.71 16 38 H 0.12 1.41 7.08 -2.39 -0.02 1.40 16 39 H 0.07 1.57 6.82 -2.38 -0.02 1.56 16 40 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.09 2.28 6.37 -2.39 -0.02 2.26 16 42 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 3.14 6.67 -2.39 -0.02 3.13 16 44 H -0.03 -1.74 8.12 -2.38 -0.02 -1.76 16 45 H 0.01 0.40 7.97 -2.39 -0.02 0.38 16 46 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 47 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 48 H 0.09 2.77 7.99 -2.39 -0.02 2.75 16 49 H 0.10 2.68 7.09 -2.39 -0.02 2.67 16 50 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -69.24 384.31 -0.66 -69.90 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.93 Total: 14.14 kcal Atomic # 6 Polarization: 24.05 SS G_CDS: 6.37 Total: 30.42 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -8.49 Total: -112.25 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -1.50 Total: -46.20 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -69.24 -0.66 -69.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336392426.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.147 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds