Wall clock time and date at job start Tue Mar 31 2020 23:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.70210 * 2 1 4 4 C 1.52759 * 109.51213 * 239.88869 * 2 1 3 5 5 H 1.09001 * 109.56343 * 65.66524 * 4 2 1 6 6 O 1.42902 * 109.38303 * 305.63402 * 4 2 1 7 7 C 1.53037 * 109.38561 * 185.70526 * 4 2 1 8 8 C 1.53040 * 109.53798 * 61.23983 * 7 4 2 9 9 C 1.53193 * 109.31163 * 298.63248 * 8 7 4 10 10 N 1.46920 * 109.59080 * 120.35545 * 2 1 3 11 11 C 1.34778 * 120.62830 * 353.42600 * 10 2 1 12 12 O 1.21346 * 120.00053 * 6.99934 * 11 10 2 13 13 C 1.49453 * 119.99847 * 187.00776 * 11 10 2 14 14 O 1.21345 * 120.00409 * 6.68594 * 13 11 10 15 15 N 1.34781 * 119.99536 * 186.68428 * 13 11 10 16 16 C 1.47076 * 120.88338 * 352.67288 * 15 13 11 17 17 C 1.53248 * 108.51932 * 231.16230 * 16 15 13 18 18 N 1.46897 * 109.34227 * 306.17163 * 17 16 15 19 19 C 1.46901 * 111.00119 * 187.25460 * 18 17 16 20 20 C 1.50693 * 109.46901 * 170.00129 * 19 18 17 21 21 H 1.07998 * 120.00466 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99554 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99746 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00441 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47165 * 90.00092 * 24 22 20 26 26 H 1.48495 * 109.47363 * 210.00569 * 24 22 20 27 27 H 1.48500 * 109.46898 * 330.00514 * 24 22 20 28 28 C 1.46903 * 111.26943 * 63.10297 * 18 17 16 29 29 C 1.47076 * 120.87734 * 172.65149 * 15 13 11 30 30 H 1.08999 * 109.47067 * 297.11659 * 1 2 3 31 31 H 1.08997 * 109.47062 * 57.11147 * 1 2 3 32 32 H 1.08996 * 109.46817 * 177.11376 * 1 2 3 33 33 H 0.96703 * 114.00089 * 180.14438 * 6 4 2 34 34 H 1.08996 * 109.46232 * 301.21407 * 7 4 2 35 35 H 1.09004 * 109.46057 * 181.25925 * 7 4 2 36 36 H 1.08999 * 109.49384 * 178.68555 * 8 7 4 37 37 H 1.08994 * 109.52679 * 58.60361 * 8 7 4 38 38 H 1.08999 * 109.58601 * 294.85235 * 9 8 7 39 39 H 1.08993 * 109.70192 * 174.49531 * 9 8 7 40 40 H 1.08994 * 109.63154 * 111.45630 * 16 15 13 41 41 H 1.08996 * 109.63241 * 350.87146 * 16 15 13 42 42 H 1.09003 * 109.49239 * 186.20975 * 17 16 15 43 43 H 1.09000 * 109.51130 * 66.14262 * 17 16 15 44 44 H 1.09002 * 109.46722 * 49.99596 * 19 18 17 45 45 H 1.09000 * 109.46834 * 289.99676 * 19 18 17 46 46 H 0.97005 * 120.00218 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.49033 * 56.85556 * 28 18 17 48 48 H 1.09003 * 109.49308 * 176.93744 * 28 18 17 49 49 H 1.08995 * 109.63262 * 248.54327 * 29 15 13 50 50 H 1.09008 * 109.63214 * 9.12470 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0402 -0.7224 -1.2456 5 1 1.7632 -0.1563 -2.1349 6 8 1.4584 -2.0260 -1.3095 7 6 3.5638 -0.8460 -1.1727 8 6 3.9523 -1.6686 0.0580 9 6 3.4645 -0.9519 1.3210 10 7 2.0226 -0.6995 1.1944 11 6 1.1674 -1.1071 2.1530 12 8 -0.0297 -1.0124 1.9784 13 6 1.6935 -1.6754 3.4313 14 8 2.8856 -1.6588 3.6575 15 7 0.8438 -2.2063 4.3328 16 6 -0.6119 -2.0948 4.1551 17 6 -1.2195 -1.5439 5.4496 18 7 -0.7940 -2.3791 6.5807 19 6 -1.4904 -1.9896 7.8141 20 6 -1.2198 -3.0117 8.8878 21 1 -0.5936 -3.8655 8.6752 22 6 -1.7727 -2.8574 10.1414 23 7 -1.5370 -3.7497 11.0785 24 14 -2.8565 -1.3811 10.5091 25 1 -4.2699 -1.7152 10.1992 26 1 -2.7358 -1.0238 11.9453 27 1 -2.4255 -0.2307 9.6749 28 6 0.6631 -2.3301 6.7609 29 6 1.3478 -2.9131 5.5200 30 1 -0.3633 0.4684 0.9147 31 1 -0.3633 0.5580 -0.8629 32 1 -0.3633 -1.0263 -0.0517 33 1 1.7393 -2.5449 -2.0756 34 1 4.0057 0.1477 -1.0996 35 1 3.9314 -1.3414 -2.0714 36 1 5.0363 -1.7760 0.0963 37 1 3.4910 -2.6543 -0.0022 38 1 3.9929 -0.0049 1.4309 39 1 3.6507 -1.5777 2.1937 40 1 -1.0314 -3.0782 3.9433 41 1 -0.8292 -1.4156 3.3307 42 1 -2.3069 -1.5581 5.3759 43 1 -0.8787 -0.5203 5.6050 44 1 -2.5625 -1.9366 7.6246 45 1 -1.1306 -1.0143 8.1419 46 1 -1.9256 -3.6410 11.9606 47 1 0.9780 -1.2956 6.8977 48 1 0.9410 -2.9144 7.6380 49 1 1.1167 -3.9752 5.4395 50 1 2.4263 -2.7751 5.5981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345785389.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:59 Heat of formation + Delta-G solvation = -51.864194 kcal Electronic energy + Delta-G solvation = -31450.568721 eV Core-core repulsion = 27287.243030 eV Total energy + Delta-G solvation = -4163.325691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44326 -39.66559 -38.23907 -37.79950 -35.87802 -34.42486 -33.10482 -32.35910 -32.00702 -30.79224 -28.95954 -27.72650 -26.16509 -25.06038 -24.30003 -23.08090 -22.34373 -21.51726 -20.97619 -19.98345 -18.96964 -17.49186 -17.14446 -16.79820 -16.66302 -16.32098 -16.08770 -15.59121 -15.05370 -15.04029 -14.62094 -14.58439 -14.51673 -14.04891 -13.99273 -13.67821 -13.45294 -13.30814 -13.08674 -12.99263 -12.78752 -12.39658 -12.27895 -11.91847 -11.83605 -11.67624 -11.54242 -11.42039 -11.19959 -11.01083 -10.97311 -10.78741 -10.55810 -10.45645 -10.30660 -10.00037 -9.86931 -9.34236 -8.92629 -8.60368 -8.57712 -8.51556 -7.42712 -6.07046 -4.04775 1.37891 2.19482 3.15486 3.27841 3.30414 3.35477 3.37445 3.77514 4.11665 4.31690 4.36443 4.40709 4.51568 4.68678 4.72690 4.92984 5.00984 5.08044 5.22116 5.25088 5.28531 5.34525 5.40529 5.41827 5.51065 5.59416 5.62854 5.63479 5.76602 5.79044 5.88435 5.90874 5.97188 6.01042 6.21543 6.29360 6.41438 6.44430 6.50869 6.60119 6.83133 6.93710 6.96838 7.27100 7.33806 7.55626 7.69689 7.84237 7.97400 7.99385 8.62444 9.00427 9.54549 11.05835 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027236 B = 0.002515 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.804517 B =11129.456371 C =11678.814950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.147 3.853 3 H 0.086 0.914 4 C 0.093 3.907 5 H 0.065 0.935 6 O -0.552 6.552 7 C -0.156 4.156 8 C -0.130 4.130 9 C 0.064 3.936 10 N -0.570 5.570 11 C 0.517 3.483 12 O -0.501 6.501 13 C 0.503 3.497 14 O -0.527 6.527 15 N -0.568 5.568 16 C 0.063 3.937 17 C 0.040 3.960 18 N -0.529 5.529 19 C 0.162 3.838 20 C -0.511 4.511 21 H 0.081 0.919 22 C 0.069 3.931 23 N -0.899 5.899 24 Si 0.875 3.125 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.268 1.268 28 C 0.052 3.948 29 C 0.109 3.891 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.374 0.626 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.148 0.852 40 H 0.073 0.927 41 H 0.148 0.852 42 H 0.082 0.918 43 H 0.025 0.975 44 H 0.026 0.974 45 H -0.012 1.012 46 H 0.264 0.736 47 H 0.025 0.975 48 H 0.104 0.896 49 H 0.081 0.919 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.061 7.634 -27.637 30.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.044 3.956 3 H 0.104 0.896 4 C 0.033 3.967 5 H 0.083 0.917 6 O -0.357 6.357 7 C -0.194 4.194 8 C -0.169 4.169 9 C -0.057 4.057 10 N -0.303 5.303 11 C 0.301 3.699 12 O -0.379 6.379 13 C 0.286 3.714 14 O -0.407 6.407 15 N -0.299 5.299 16 C -0.059 4.059 17 C -0.090 4.090 18 N -0.253 5.253 19 C 0.036 3.964 20 C -0.549 4.549 21 H 0.099 0.901 22 C -0.133 4.133 23 N -0.538 5.538 24 Si 0.702 3.298 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.193 1.193 28 C -0.077 4.077 29 C -0.012 4.012 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.221 0.779 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.164 0.836 40 H 0.092 0.908 41 H 0.165 0.835 42 H 0.101 0.899 43 H 0.043 0.957 44 H 0.044 0.956 45 H 0.006 0.994 46 H 0.074 0.926 47 H 0.044 0.956 48 H 0.122 0.878 49 H 0.099 0.901 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.576 7.368 -26.943 29.528 hybrid contribution -0.026 1.416 -0.034 1.417 sum 9.550 8.784 -26.976 29.935 Atomic orbital electron populations 1.22253 0.91573 1.04355 1.01537 1.21390 0.97152 0.94222 0.82800 0.89628 1.22137 0.91878 0.85273 0.97429 0.91671 1.86624 1.71132 1.27177 1.50734 1.22286 0.96342 1.01532 0.99209 1.21836 1.01081 0.99958 0.93985 1.22986 0.78330 1.02535 1.01870 1.47833 1.08169 1.55407 1.18897 1.20148 0.86244 0.78793 0.84731 1.90453 1.14942 1.54342 1.78124 1.20097 0.86329 0.79727 0.85223 1.90406 1.15210 1.58304 1.76820 1.48199 1.08026 1.51745 1.21963 1.23324 0.77116 1.04771 1.00645 1.22467 1.00386 0.94534 0.91565 1.61936 1.04898 1.52808 1.05695 1.20175 0.93752 0.95254 0.87197 1.21018 1.31499 1.08721 0.93684 0.90054 1.24898 0.96177 0.96066 0.96144 1.69893 1.45066 1.35092 1.03757 0.86864 0.81483 0.83805 0.77618 1.20104 1.21205 1.19327 1.22355 0.88635 0.99383 0.97327 1.22066 0.99442 0.96483 0.83251 0.90152 0.93883 0.90061 0.77903 0.90865 0.91416 0.90647 0.90891 0.91593 0.83560 0.90829 0.83531 0.89945 0.95677 0.95604 0.99390 0.92631 0.95638 0.87752 0.90074 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 7.45 37.16 0.28 -1.16 16 2 C 0.15 1.33 3.27 -67.83 -0.22 1.10 16 3 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 4 C 0.09 0.64 3.30 -26.84 -0.09 0.55 16 5 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 6 O -0.55 -4.57 11.54 -35.23 -0.41 -4.98 16 7 C -0.16 -0.89 5.61 -26.69 -0.15 -1.04 16 8 C -0.13 -0.97 5.94 -26.61 -0.16 -1.13 16 9 C 0.06 0.62 6.03 -3.71 -0.02 0.60 16 10 N -0.57 -6.30 2.92 -165.98 -0.48 -6.78 16 11 C 0.52 6.98 7.59 -11.58 -0.09 6.90 16 12 O -0.50 -7.10 8.46 5.50 0.05 -7.06 16 13 C 0.50 7.53 7.62 -11.58 -0.09 7.44 16 14 O -0.53 -8.23 12.60 5.50 0.07 -8.16 16 15 N -0.57 -8.91 3.01 -172.97 -0.52 -9.43 16 16 C 0.06 0.96 6.29 -3.60 -0.02 0.94 16 17 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 18 N -0.53 -11.02 4.62 -235.76 -1.09 -12.10 16 19 C 0.16 3.92 3.79 -4.98 -0.02 3.90 16 20 C -0.51 -14.33 8.96 -34.44 -0.31 -14.64 16 21 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16 22 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 23 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 24 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 28 C 0.05 0.99 5.46 -3.70 -0.02 0.97 16 29 C 0.11 1.77 6.62 -3.60 -0.02 1.75 16 30 H 0.08 0.94 6.30 -51.93 -0.33 0.62 16 31 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 1.02 6.45 -51.93 -0.34 0.69 16 33 H 0.37 1.59 9.08 45.56 0.41 2.01 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.64 7.61 -51.93 -0.40 0.25 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.15 1.75 4.22 -55.27 -0.23 1.52 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.15 2.18 4.06 -56.06 -0.23 1.95 16 42 H 0.08 1.36 7.99 -51.93 -0.41 0.95 16 43 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.03 0.62 7.40 -51.93 -0.38 0.24 16 45 H -0.01 -0.29 7.18 -51.93 -0.37 -0.66 16 46 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.10 2.18 6.67 -51.93 -0.35 1.83 16 49 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 50 H 0.09 1.41 7.05 -51.92 -0.37 1.05 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -32.39 373.60 -8.90 -41.28 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.19 Total: 2.63 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -1.05 Total: 8.74 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -1.32 Total: -54.90 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.29 Total: -20.19 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.39 -8.90 -41.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345785389.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.580 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds