Wall clock time and date at job start Tue Mar 31 2020 23:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.70210 * 2 1 4 4 C 1.52759 * 109.51213 * 239.88869 * 2 1 3 5 5 H 1.09001 * 109.56343 * 65.66524 * 4 2 1 6 6 O 1.42902 * 109.38303 * 305.63402 * 4 2 1 7 7 C 1.53037 * 109.38561 * 185.70526 * 4 2 1 8 8 C 1.53040 * 109.53798 * 61.23983 * 7 4 2 9 9 C 1.53193 * 109.31163 * 298.63248 * 8 7 4 10 10 N 1.46920 * 109.59080 * 120.35545 * 2 1 3 11 11 C 1.34778 * 120.62830 * 353.42600 * 10 2 1 12 12 O 1.21346 * 120.00053 * 6.99934 * 11 10 2 13 13 C 1.49453 * 119.99847 * 187.00776 * 11 10 2 14 14 O 1.21345 * 120.00409 * 6.68594 * 13 11 10 15 15 N 1.34781 * 119.99536 * 186.68428 * 13 11 10 16 16 C 1.47076 * 120.88338 * 352.67288 * 15 13 11 17 17 C 1.53248 * 108.51932 * 231.16230 * 16 15 13 18 18 N 1.46897 * 109.34227 * 306.17163 * 17 16 15 19 19 C 1.46901 * 111.00119 * 187.25460 * 18 17 16 20 20 C 1.50693 * 109.46901 * 170.00129 * 19 18 17 21 21 H 1.07998 * 120.00466 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99554 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99746 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00441 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47165 * 90.00092 * 24 22 20 26 26 H 1.48495 * 109.47363 * 210.00569 * 24 22 20 27 27 H 1.48500 * 109.46898 * 330.00514 * 24 22 20 28 28 C 1.46903 * 111.26943 * 63.10297 * 18 17 16 29 29 C 1.47076 * 120.87734 * 172.65149 * 15 13 11 30 30 H 1.08999 * 109.47067 * 297.11659 * 1 2 3 31 31 H 1.08997 * 109.47062 * 57.11147 * 1 2 3 32 32 H 1.08996 * 109.46817 * 177.11376 * 1 2 3 33 33 H 0.96703 * 114.00089 * 180.14438 * 6 4 2 34 34 H 1.08996 * 109.46232 * 301.21407 * 7 4 2 35 35 H 1.09004 * 109.46057 * 181.25925 * 7 4 2 36 36 H 1.08999 * 109.49384 * 178.68555 * 8 7 4 37 37 H 1.08994 * 109.52679 * 58.60361 * 8 7 4 38 38 H 1.08999 * 109.58601 * 294.85235 * 9 8 7 39 39 H 1.08993 * 109.70192 * 174.49531 * 9 8 7 40 40 H 1.08994 * 109.63154 * 111.45630 * 16 15 13 41 41 H 1.08996 * 109.63241 * 350.87146 * 16 15 13 42 42 H 1.09003 * 109.49239 * 186.20975 * 17 16 15 43 43 H 1.09000 * 109.51130 * 66.14262 * 17 16 15 44 44 H 1.09002 * 109.46722 * 49.99596 * 19 18 17 45 45 H 1.09000 * 109.46834 * 289.99676 * 19 18 17 46 46 H 0.97005 * 120.00218 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.49033 * 56.85556 * 28 18 17 48 48 H 1.09003 * 109.49308 * 176.93744 * 28 18 17 49 49 H 1.08995 * 109.63262 * 248.54327 * 29 15 13 50 50 H 1.09008 * 109.63214 * 9.12470 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0402 -0.7224 -1.2456 5 1 1.7632 -0.1563 -2.1349 6 8 1.4584 -2.0260 -1.3095 7 6 3.5638 -0.8460 -1.1727 8 6 3.9523 -1.6686 0.0580 9 6 3.4645 -0.9519 1.3210 10 7 2.0226 -0.6995 1.1944 11 6 1.1674 -1.1071 2.1530 12 8 -0.0297 -1.0124 1.9784 13 6 1.6935 -1.6754 3.4313 14 8 2.8856 -1.6588 3.6575 15 7 0.8438 -2.2063 4.3328 16 6 -0.6119 -2.0948 4.1551 17 6 -1.2195 -1.5439 5.4496 18 7 -0.7940 -2.3791 6.5807 19 6 -1.4904 -1.9896 7.8141 20 6 -1.2198 -3.0117 8.8878 21 1 -0.5936 -3.8655 8.6752 22 6 -1.7727 -2.8574 10.1414 23 7 -1.5370 -3.7497 11.0785 24 14 -2.8565 -1.3811 10.5091 25 1 -4.2699 -1.7152 10.1992 26 1 -2.7358 -1.0238 11.9453 27 1 -2.4255 -0.2307 9.6749 28 6 0.6631 -2.3301 6.7609 29 6 1.3478 -2.9131 5.5200 30 1 -0.3633 0.4684 0.9147 31 1 -0.3633 0.5580 -0.8629 32 1 -0.3633 -1.0263 -0.0517 33 1 1.7393 -2.5449 -2.0756 34 1 4.0057 0.1477 -1.0996 35 1 3.9314 -1.3414 -2.0714 36 1 5.0363 -1.7760 0.0963 37 1 3.4910 -2.6543 -0.0022 38 1 3.9929 -0.0049 1.4309 39 1 3.6507 -1.5777 2.1937 40 1 -1.0314 -3.0782 3.9433 41 1 -0.8292 -1.4156 3.3307 42 1 -2.3069 -1.5581 5.3759 43 1 -0.8787 -0.5203 5.6050 44 1 -2.5625 -1.9366 7.6246 45 1 -1.1306 -1.0143 8.1419 46 1 -1.9256 -3.6410 11.9606 47 1 0.9780 -1.2956 6.8977 48 1 0.9410 -2.9144 7.6380 49 1 1.1167 -3.9752 5.4395 50 1 2.4263 -2.7751 5.5981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345785389.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:58 Heat of formation + Delta-G solvation = -77.479089 kcal Electronic energy + Delta-G solvation = -31451.679466 eV Core-core repulsion = 27287.243030 eV Total energy + Delta-G solvation = -4164.436437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.44696 -40.69395 -39.17511 -39.12940 -36.75515 -35.81857 -34.42973 -33.78434 -32.74632 -32.17885 -30.69396 -28.54939 -27.61580 -26.11056 -25.40951 -24.27344 -23.51856 -22.87514 -22.05265 -21.05591 -20.12442 -18.99680 -18.23386 -18.11822 -17.70717 -17.32568 -17.02432 -16.49214 -16.41919 -16.16529 -15.93609 -15.80938 -15.72092 -15.45466 -15.18704 -14.98426 -14.52566 -14.43476 -14.30339 -14.04241 -13.89478 -13.69287 -13.46678 -13.08131 -12.92991 -12.81246 -12.59399 -12.52526 -12.39007 -12.32931 -12.27483 -12.08285 -11.91169 -11.87056 -11.65120 -11.47242 -11.15199 -10.78731 -10.68541 -9.97147 -9.69698 -9.57207 -9.10372 -8.28850 -6.32307 0.27568 1.17294 1.34750 1.35698 1.46130 2.05073 2.25300 2.33745 3.00549 3.03376 3.15246 3.32696 3.76587 3.84944 3.90068 3.96719 4.00236 4.08738 4.17060 4.22666 4.29581 4.35805 4.42087 4.43948 4.50979 4.64017 4.75766 4.78355 4.80955 4.84014 4.85214 4.91768 4.93840 4.99299 5.01483 5.08275 5.10623 5.18566 5.28218 5.35782 5.45601 5.50654 5.69371 5.86524 6.00000 6.21118 6.25944 6.58939 6.61118 6.73524 6.87981 6.94466 7.31224 8.87349 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027236 B = 0.002515 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.804517 B =11129.456371 C =11678.814950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.137 3.863 3 H 0.109 0.891 4 C 0.094 3.906 5 H 0.090 0.910 6 O -0.577 6.577 7 C -0.149 4.149 8 C -0.126 4.126 9 C 0.060 3.940 10 N -0.563 5.563 11 C 0.512 3.488 12 O -0.513 6.513 13 C 0.501 3.499 14 O -0.535 6.535 15 N -0.576 5.576 16 C 0.074 3.926 17 C 0.041 3.959 18 N -0.541 5.541 19 C 0.172 3.828 20 C -0.516 4.516 21 H 0.043 0.957 22 C 0.010 3.990 23 N -0.946 5.946 24 Si 0.946 3.054 25 H -0.263 1.263 26 H -0.282 1.282 27 H -0.255 1.255 28 C 0.057 3.943 29 C 0.121 3.879 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.390 0.610 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.124 0.876 40 H 0.073 0.927 41 H 0.159 0.841 42 H 0.094 0.906 43 H 0.025 0.975 44 H 0.033 0.967 45 H -0.015 1.015 46 H 0.267 0.733 47 H 0.021 0.979 48 H 0.078 0.922 49 H 0.082 0.918 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.318 9.805 -30.593 33.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.035 3.965 3 H 0.126 0.874 4 C 0.034 3.966 5 H 0.108 0.892 6 O -0.385 6.385 7 C -0.187 4.187 8 C -0.164 4.164 9 C -0.061 4.061 10 N -0.295 5.295 11 C 0.295 3.705 12 O -0.392 6.392 13 C 0.285 3.715 14 O -0.415 6.415 15 N -0.308 5.308 16 C -0.047 4.047 17 C -0.088 4.088 18 N -0.266 5.266 19 C 0.045 3.955 20 C -0.555 4.555 21 H 0.061 0.939 22 C -0.188 4.188 23 N -0.586 5.586 24 Si 0.769 3.231 25 H -0.188 1.188 26 H -0.208 1.208 27 H -0.179 1.179 28 C -0.071 4.071 29 C -0.001 4.001 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.240 0.760 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.141 0.859 40 H 0.091 0.909 41 H 0.176 0.824 42 H 0.112 0.888 43 H 0.043 0.957 44 H 0.051 0.949 45 H 0.002 0.998 46 H 0.076 0.924 47 H 0.039 0.961 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.871 9.544 -29.965 32.961 hybrid contribution 0.009 0.685 0.804 1.056 sum 9.881 10.229 -29.161 32.444 Atomic orbital electron populations 1.22087 0.92643 1.02727 1.01517 1.21726 0.96406 0.95544 0.82801 0.87374 1.22197 0.92501 0.84906 0.96952 0.89231 1.86588 1.71777 1.28067 1.52067 1.22261 0.95406 1.02109 0.98889 1.21790 1.01761 0.99088 0.93741 1.22991 0.77719 1.03044 1.02297 1.47961 1.08447 1.54292 1.18763 1.19901 0.86426 0.79463 0.84708 1.90439 1.15278 1.55301 1.78177 1.20510 0.86129 0.79185 0.85690 1.90433 1.15544 1.58339 1.77210 1.48230 1.08273 1.52296 1.22006 1.23283 0.76865 1.04917 0.99632 1.22565 1.01302 0.94005 0.90915 1.61859 1.05487 1.53959 1.05309 1.19944 0.94397 0.93567 0.87587 1.21230 1.30581 1.08441 0.95199 0.93922 1.25812 0.97808 0.99302 0.95865 1.70043 1.46715 1.37471 1.04404 0.85736 0.79660 0.80022 0.77636 1.18837 1.20780 1.17881 1.22245 0.88152 0.98773 0.97978 1.21847 0.99485 0.96370 0.82426 0.91976 0.91788 0.92653 0.76043 0.89473 0.89416 0.89146 0.92574 0.90151 0.85931 0.90873 0.82449 0.88766 0.95699 0.94899 0.99775 0.92402 0.96073 0.90396 0.89956 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 7.45 71.98 0.54 -1.97 16 2 C 0.14 2.11 3.27 44.83 0.15 2.26 16 3 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 4 C 0.09 0.99 3.30 30.53 0.10 1.09 16 5 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 6 O -0.58 -8.33 11.54 -148.98 -1.72 -10.05 16 7 C -0.15 -1.13 5.61 30.62 0.17 -0.96 16 8 C -0.13 -1.57 5.94 30.67 0.18 -1.39 16 9 C 0.06 1.07 6.03 86.36 0.52 1.59 16 10 N -0.56 -11.53 2.92 -797.41 -2.33 -13.86 16 11 C 0.51 13.46 7.59 87.27 0.66 14.12 16 12 O -0.51 -14.24 8.46 -3.23 -0.03 -14.26 16 13 C 0.50 14.82 7.62 87.27 0.66 15.48 16 14 O -0.54 -16.55 12.60 -3.23 -0.04 -16.59 16 15 N -0.58 -17.99 3.01 -819.51 -2.47 -20.45 16 16 C 0.07 2.23 6.29 86.35 0.54 2.78 16 17 C 0.04 1.39 5.62 86.39 0.49 1.88 16 18 N -0.54 -22.78 4.62 -899.80 -4.16 -26.93 16 19 C 0.17 8.33 3.79 85.55 0.32 8.66 16 20 C -0.52 -29.84 8.96 25.60 0.23 -29.61 16 21 H 0.04 2.73 7.37 -2.91 -0.02 2.71 16 22 C 0.01 0.57 5.47 84.65 0.46 1.03 16 23 N -0.95 -59.13 13.96 21.45 0.30 -58.83 16 24 Si 0.95 44.30 27.47 68.60 1.88 46.18 16 25 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 H -0.25 -11.29 6.54 99.48 0.65 -10.63 16 28 C 0.06 2.27 5.46 86.38 0.47 2.74 16 29 C 0.12 3.98 6.62 86.35 0.57 4.55 16 30 H 0.06 1.40 6.30 -2.39 -0.02 1.38 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 1.35 6.45 -2.39 -0.02 1.33 16 33 H 0.39 2.42 9.08 -74.06 -0.67 1.75 16 34 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.90 7.61 -2.39 -0.02 0.89 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.12 2.84 4.22 -55.26 -0.23 2.61 16 40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.16 4.56 4.06 -67.81 -0.28 4.28 16 42 H 0.09 2.99 7.99 -2.39 -0.02 2.97 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.03 1.55 7.40 -2.39 -0.02 1.53 16 45 H -0.02 -0.76 7.18 -2.39 -0.02 -0.77 16 46 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 47 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.08 3.46 6.67 -2.39 -0.02 3.44 16 49 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 50 H 0.10 3.12 7.05 -2.38 -0.02 3.11 16 Total: -1.00 -71.77 373.60 -2.74 -74.51 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -0.26 Total: 18.04 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 6.07 Total: 22.25 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -8.65 Total: -120.08 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -1.79 Total: -40.90 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Total: -71.77 -2.74 -74.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345785389.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.965 kcal (2) G-P(sol) polarization free energy of solvation -71.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds