Wall clock time and date at job start Tue Mar 31 2020 23:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.52314 * 2 1 4 4 C 1.53095 * 109.52022 * 239.87617 * 2 1 3 5 5 O 1.42900 * 109.41084 * 182.42336 * 4 2 1 6 6 C 1.42909 * 114.10163 * 61.15623 * 5 4 2 7 7 C 1.53092 * 109.41369 * 298.84292 * 6 5 4 8 8 C 1.53170 * 109.16424 * 57.60525 * 7 6 5 9 9 H 1.09005 * 109.54499 * 183.15191 * 8 7 6 10 10 C 1.50706 * 109.54614 * 62.88701 * 8 7 6 11 11 O 1.21278 * 120.00029 * 240.44796 * 10 8 7 12 12 N 1.34776 * 119.99850 * 60.43900 * 10 8 7 13 13 C 1.46498 * 119.99840 * 180.02562 * 12 10 8 14 14 H 1.08998 * 112.85269 * 23.80991 * 13 12 10 15 15 C 1.53782 * 113.61201 * 155.00128 * 13 12 10 16 16 C 1.53783 * 87.08060 * 89.11807 * 15 13 12 17 17 H 1.08999 * 113.61323 * 270.79817 * 16 15 13 18 18 N 1.46898 * 113.61503 * 139.98072 * 16 15 13 19 19 C 1.46899 * 111.00228 * 155.00224 * 18 16 15 20 20 C 1.50695 * 109.47545 * 180.02562 * 19 18 16 21 21 O 1.21294 * 119.99937 * 359.97438 * 20 19 18 22 22 N 1.34778 * 120.00093 * 180.02562 * 20 19 18 23 23 C 1.37105 * 119.99800 * 180.02562 * 22 20 19 24 24 H 1.07996 * 119.99664 * 359.97438 * 23 22 20 25 25 C 1.38946 * 119.99698 * 179.97438 * 23 22 20 26 26 N 1.31412 * 119.99749 * 179.97438 * 25 23 22 27 27 Si 1.86797 * 120.00327 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47273 * 90.00028 * 27 25 23 29 29 H 1.48496 * 109.47110 * 210.00461 * 27 25 23 30 30 H 1.48502 * 109.46922 * 329.99815 * 27 25 23 31 31 C 1.53780 * 87.08150 * 25.43368 * 16 15 13 32 32 H 1.09001 * 109.46902 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46838 * 299.99611 * 1 2 3 34 34 H 1.09003 * 109.46992 * 59.99784 * 1 2 3 35 35 H 1.09001 * 109.48126 * 302.40029 * 4 2 1 36 36 H 1.08997 * 109.48173 * 62.43160 * 4 2 1 37 37 H 1.09001 * 109.47365 * 58.82217 * 6 5 4 38 38 H 1.08997 * 109.48206 * 178.84273 * 6 5 4 39 39 H 1.08998 * 109.51601 * 177.51225 * 7 6 5 40 40 H 1.08993 * 109.52203 * 297.63544 * 7 6 5 41 41 H 0.97006 * 119.99963 * 0.02562 * 12 10 8 42 42 H 1.09003 * 113.61195 * 203.66227 * 15 13 12 43 43 H 1.08998 * 113.61678 * 334.56797 * 15 13 12 44 44 H 1.00901 * 111.00011 * 278.95183 * 18 16 15 45 45 H 1.09006 * 109.46899 * 299.99861 * 19 18 16 46 46 H 1.08996 * 109.47331 * 59.99417 * 19 18 16 47 47 H 0.96995 * 119.99925 * 359.97438 * 22 20 19 48 48 H 0.97005 * 120.00018 * 179.97438 * 26 25 23 49 49 H 1.09005 * 113.61504 * 220.02394 * 31 16 15 50 50 H 1.08995 * 113.61836 * 89.11592 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7242 -1.2481 5 8 3.4695 -0.7723 -1.2175 6 6 4.0057 -1.4794 -0.0973 7 6 3.5729 -0.7855 1.1970 8 6 2.0433 -0.7251 1.2479 9 1 1.7292 -0.1827 2.1398 10 6 1.4843 -2.1242 1.2837 11 8 0.7478 -2.5057 0.3989 12 7 1.8030 -2.9514 2.2988 13 6 1.2601 -4.3116 2.3333 14 1 0.9763 -4.6793 1.3472 15 6 2.1247 -5.2999 3.1337 16 6 1.3114 -4.8867 4.3718 17 1 1.7302 -4.0328 4.9043 18 7 0.9831 -6.0086 5.2614 19 6 0.7613 -5.5425 6.6367 20 6 0.4283 -6.7185 7.5183 21 8 0.3801 -7.8351 7.0471 22 7 0.1832 -6.5294 8.8300 23 6 -0.1193 -7.5994 9.6321 24 1 -0.1614 -8.5937 9.2126 25 6 -0.3715 -7.4045 10.9845 26 7 -0.6618 -8.4300 11.7532 27 14 -0.2979 -5.6848 11.7100 28 1 -1.6390 -5.0530 11.6232 29 1 0.1203 -5.7652 13.1326 30 1 0.6838 -4.8689 10.9510 31 6 0.1754 -4.5151 3.4042 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.6441 -1.7389 -1.2681 36 1 1.7148 -0.1880 -2.1390 37 1 3.6337 -2.5039 -0.1023 38 1 5.0938 -1.4874 -0.1594 39 1 3.9440 -1.3483 2.0535 40 1 3.9794 0.2255 1.2217 41 1 2.3919 -2.6461 3.0066 42 1 1.9801 -6.3406 2.8437 43 1 3.1758 -5.0164 3.1872 44 1 0.1830 -6.5193 4.9193 45 1 1.6645 -5.0565 7.0058 46 1 -0.0651 -4.8320 6.6507 47 1 0.2214 -5.6364 9.2067 48 1 -0.8376 -8.2941 12.6974 49 1 -0.3472 -3.5979 3.6761 50 1 -0.5020 -5.3412 3.1882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480156094.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:19 Heat of formation + Delta-G solvation = -93.031911 kcal Electronic energy + Delta-G solvation = -29666.879214 eV Core-core repulsion = 25501.768357 eV Total energy + Delta-G solvation = -4165.110857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38245 -39.76675 -38.46403 -37.96353 -34.88939 -34.63916 -33.99310 -33.11021 -31.89684 -31.63891 -27.60044 -27.02545 -26.00634 -25.89388 -24.35932 -23.13474 -22.88252 -22.05781 -20.12455 -19.84979 -19.31180 -18.32434 -17.29124 -16.74458 -16.55708 -16.33858 -16.13959 -15.60306 -15.55531 -15.06028 -14.86987 -14.85143 -14.68305 -14.31866 -14.16763 -13.55080 -13.27981 -13.20890 -12.92051 -12.86739 -12.79023 -12.65791 -12.42340 -12.39988 -12.22427 -12.01878 -11.87054 -11.62888 -11.46472 -11.21890 -11.07488 -10.99634 -10.82663 -10.63186 -10.56991 -10.03744 -10.00298 -9.60552 -9.58269 -9.35441 -8.62017 -8.22504 -8.14372 -6.33867 -3.85463 2.19314 2.71715 2.99280 3.03500 3.12166 3.51366 3.70312 4.03440 4.03704 4.07835 4.16305 4.22716 4.28812 4.43340 4.45718 4.61441 4.68939 4.78912 4.79609 4.91844 5.00090 5.05701 5.18424 5.19091 5.21196 5.27816 5.33836 5.41209 5.46681 5.53420 5.56124 5.58631 5.60572 5.63680 5.68733 5.72259 5.78246 5.80601 5.87402 5.90358 6.11275 6.31989 6.83122 7.07594 7.10087 7.51446 7.55487 7.84740 8.11536 8.56592 8.91999 9.39305 9.79244 10.79212 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.001840 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.655559 B =15215.395768 C =15568.565501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.102 4.102 3 H 0.081 0.919 4 C 0.053 3.947 5 O -0.384 6.384 6 C 0.058 3.942 7 C -0.148 4.148 8 C -0.109 4.109 9 H 0.102 0.898 10 C 0.521 3.479 11 O -0.529 6.529 12 N -0.710 5.710 13 C 0.118 3.882 14 H 0.104 0.896 15 C -0.132 4.132 16 C 0.068 3.932 17 H 0.093 0.907 18 N -0.656 5.656 19 C 0.047 3.953 20 C 0.448 3.552 21 O -0.565 6.565 22 N -0.590 5.590 23 C -0.305 4.305 24 H 0.120 0.880 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.880 3.120 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.270 1.270 31 C -0.180 4.180 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.400 0.600 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.354 0.646 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.068 0.932 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.368 21.176 -21.998 31.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.121 4.121 3 H 0.099 0.901 4 C -0.023 4.023 5 O -0.302 6.302 6 C -0.019 4.019 7 C -0.186 4.186 8 C -0.131 4.131 9 H 0.120 0.880 10 C 0.308 3.692 11 O -0.406 6.406 12 N -0.361 5.361 13 C 0.012 3.988 14 H 0.122 0.878 15 C -0.171 4.171 16 C -0.044 4.044 17 H 0.111 0.889 18 N -0.288 5.288 19 C -0.085 4.085 20 C 0.234 3.766 21 O -0.447 6.447 22 N -0.230 5.230 23 C -0.434 4.434 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.520 5.520 27 Si 0.707 3.293 28 H -0.197 1.197 29 H -0.201 1.201 30 H -0.195 1.195 31 C -0.220 4.220 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.235 0.765 42 H 0.120 0.880 43 H 0.091 0.909 44 H 0.175 0.825 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.508 19.933 -22.743 31.160 hybrid contribution -0.747 1.897 1.563 2.568 sum 6.762 21.829 -21.180 31.158 Atomic orbital electron populations 1.22101 0.93762 1.04952 1.01313 1.21532 0.97230 0.99354 0.94010 0.90052 1.22930 0.80257 1.01951 0.97206 1.87917 1.20953 1.76196 1.45174 1.22569 0.99294 0.94704 0.85330 1.22218 0.93511 1.03372 0.99469 1.21493 0.96590 0.93638 1.01352 0.88021 1.20592 0.80379 0.87030 0.81249 1.90578 1.36394 1.76394 1.37201 1.45776 1.50607 1.13480 1.26197 1.21780 0.95355 0.81817 0.99827 0.87788 1.23466 0.98861 1.00028 0.94739 1.23103 0.95936 0.93308 0.92019 0.88918 1.60009 1.45664 1.22557 1.00556 1.21747 1.00675 0.96227 0.89884 1.19726 0.84008 0.90074 0.82775 1.90569 1.55390 1.24936 1.73759 1.42213 1.63674 1.09159 1.07932 1.19435 1.44191 0.89892 0.89895 0.86271 1.25049 0.97519 0.97710 0.95939 1.69623 1.46429 1.29722 1.06274 0.86662 0.78740 0.84114 0.79803 1.19670 1.20144 1.19515 1.24193 0.97724 1.02581 0.97542 0.89028 0.93109 0.92703 0.90447 0.89139 0.93183 0.88542 0.90270 0.89647 0.76510 0.87968 0.90867 0.82480 0.89574 0.93748 0.79719 0.91593 0.91307 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 8.87 37.16 0.33 -0.93 16 2 C -0.10 -0.74 2.67 -90.48 -0.24 -0.98 16 3 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.05 0.45 5.86 37.21 0.22 0.67 16 5 O -0.38 -3.60 10.77 -35.23 -0.38 -3.98 16 6 C 0.06 0.41 6.62 37.21 0.25 0.65 16 7 C -0.15 -0.76 5.57 -26.60 -0.15 -0.91 16 8 C -0.11 -0.69 2.62 -91.59 -0.24 -0.93 16 9 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 10 C 0.52 4.34 5.52 -10.98 -0.06 4.28 16 11 O -0.53 -6.03 10.96 5.56 0.06 -5.97 16 12 N -0.71 -4.95 5.14 -53.02 -0.27 -5.22 16 13 C 0.12 1.00 4.32 -67.12 -0.29 0.71 16 14 H 0.10 1.02 7.46 -51.93 -0.39 0.64 16 15 C -0.13 -1.15 7.63 -25.92 -0.20 -1.35 16 16 C 0.07 0.68 4.06 -66.90 -0.27 0.41 16 17 H 0.09 0.82 7.87 -51.93 -0.41 0.41 16 18 N -0.66 -9.41 6.24 -107.13 -0.67 -10.08 16 19 C 0.05 0.74 6.01 -4.98 -0.03 0.71 16 20 C 0.45 9.97 7.82 -10.99 -0.09 9.89 16 21 O -0.56 -14.98 15.78 5.55 0.09 -14.89 16 22 N -0.59 -13.85 5.09 -10.96 -0.06 -13.90 16 23 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 24 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 25 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 26 N -0.88 -25.57 13.96 55.50 0.77 -24.79 16 27 Si 0.88 19.10 27.74 -169.99 -4.71 14.39 16 28 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 29 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 30 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 31 C -0.18 -1.67 7.49 -25.92 -0.19 -1.87 16 32 H 0.09 0.91 5.27 -51.93 -0.27 0.63 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.80 5.80 -51.93 -0.30 0.50 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.40 7.38 -51.93 -0.38 0.02 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.28 7.52 -51.93 -0.39 -0.12 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.40 1.94 8.12 -40.82 -0.33 1.61 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.35 5.35 7.90 -39.29 -0.31 5.04 16 45 H 0.09 1.20 8.13 -51.93 -0.42 0.78 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 48 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.09 0.92 7.82 -51.93 -0.41 0.51 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -33.93 391.42 -8.54 -42.47 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -8.06 Total: 13.42 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.21 Total: 2.66 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.22 Total: -54.00 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.23 Total: -24.83 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.39 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.93 -8.54 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480156094.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.558 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds