Wall clock time and date at job start Tue Mar 31 2020 23:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.52314 * 2 1 4 4 C 1.53095 * 109.52022 * 239.87617 * 2 1 3 5 5 O 1.42900 * 109.41084 * 182.42336 * 4 2 1 6 6 C 1.42909 * 114.10163 * 61.15623 * 5 4 2 7 7 C 1.53092 * 109.41369 * 298.84292 * 6 5 4 8 8 C 1.53170 * 109.16424 * 57.60525 * 7 6 5 9 9 H 1.09005 * 109.54499 * 183.15191 * 8 7 6 10 10 C 1.50706 * 109.54614 * 62.88701 * 8 7 6 11 11 O 1.21278 * 120.00029 * 240.44796 * 10 8 7 12 12 N 1.34776 * 119.99850 * 60.43900 * 10 8 7 13 13 C 1.46498 * 119.99840 * 180.02562 * 12 10 8 14 14 H 1.08998 * 112.85269 * 23.80991 * 13 12 10 15 15 C 1.53782 * 113.61201 * 155.00128 * 13 12 10 16 16 C 1.53783 * 87.08060 * 89.11807 * 15 13 12 17 17 H 1.08999 * 113.61323 * 270.79817 * 16 15 13 18 18 N 1.46898 * 113.61503 * 139.98072 * 16 15 13 19 19 C 1.46899 * 111.00228 * 155.00224 * 18 16 15 20 20 C 1.50695 * 109.47545 * 180.02562 * 19 18 16 21 21 O 1.21294 * 119.99937 * 359.97438 * 20 19 18 22 22 N 1.34778 * 120.00093 * 180.02562 * 20 19 18 23 23 C 1.37105 * 119.99800 * 180.02562 * 22 20 19 24 24 H 1.07996 * 119.99664 * 359.97438 * 23 22 20 25 25 C 1.38946 * 119.99698 * 179.97438 * 23 22 20 26 26 N 1.31412 * 119.99749 * 179.97438 * 25 23 22 27 27 Si 1.86797 * 120.00327 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47273 * 90.00028 * 27 25 23 29 29 H 1.48496 * 109.47110 * 210.00461 * 27 25 23 30 30 H 1.48502 * 109.46922 * 329.99815 * 27 25 23 31 31 C 1.53780 * 87.08150 * 25.43368 * 16 15 13 32 32 H 1.09001 * 109.46902 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46838 * 299.99611 * 1 2 3 34 34 H 1.09003 * 109.46992 * 59.99784 * 1 2 3 35 35 H 1.09001 * 109.48126 * 302.40029 * 4 2 1 36 36 H 1.08997 * 109.48173 * 62.43160 * 4 2 1 37 37 H 1.09001 * 109.47365 * 58.82217 * 6 5 4 38 38 H 1.08997 * 109.48206 * 178.84273 * 6 5 4 39 39 H 1.08998 * 109.51601 * 177.51225 * 7 6 5 40 40 H 1.08993 * 109.52203 * 297.63544 * 7 6 5 41 41 H 0.97006 * 119.99963 * 0.02562 * 12 10 8 42 42 H 1.09003 * 113.61195 * 203.66227 * 15 13 12 43 43 H 1.08998 * 113.61678 * 334.56797 * 15 13 12 44 44 H 1.00901 * 111.00011 * 278.95183 * 18 16 15 45 45 H 1.09006 * 109.46899 * 299.99861 * 19 18 16 46 46 H 1.08996 * 109.47331 * 59.99417 * 19 18 16 47 47 H 0.96995 * 119.99925 * 359.97438 * 22 20 19 48 48 H 0.97005 * 120.00018 * 179.97438 * 26 25 23 49 49 H 1.09005 * 113.61504 * 220.02394 * 31 16 15 50 50 H 1.08995 * 113.61836 * 89.11592 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7242 -1.2481 5 8 3.4695 -0.7723 -1.2175 6 6 4.0057 -1.4794 -0.0973 7 6 3.5729 -0.7855 1.1970 8 6 2.0433 -0.7251 1.2479 9 1 1.7292 -0.1827 2.1398 10 6 1.4843 -2.1242 1.2837 11 8 0.7478 -2.5057 0.3989 12 7 1.8030 -2.9514 2.2988 13 6 1.2601 -4.3116 2.3333 14 1 0.9763 -4.6793 1.3472 15 6 2.1247 -5.2999 3.1337 16 6 1.3114 -4.8867 4.3718 17 1 1.7302 -4.0328 4.9043 18 7 0.9831 -6.0086 5.2614 19 6 0.7613 -5.5425 6.6367 20 6 0.4283 -6.7185 7.5183 21 8 0.3801 -7.8351 7.0471 22 7 0.1832 -6.5294 8.8300 23 6 -0.1193 -7.5994 9.6321 24 1 -0.1614 -8.5937 9.2126 25 6 -0.3715 -7.4045 10.9845 26 7 -0.6618 -8.4300 11.7532 27 14 -0.2979 -5.6848 11.7100 28 1 -1.6390 -5.0530 11.6232 29 1 0.1203 -5.7652 13.1326 30 1 0.6838 -4.8689 10.9510 31 6 0.1754 -4.5151 3.4042 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.6441 -1.7389 -1.2681 36 1 1.7148 -0.1880 -2.1390 37 1 3.6337 -2.5039 -0.1023 38 1 5.0938 -1.4874 -0.1594 39 1 3.9440 -1.3483 2.0535 40 1 3.9794 0.2255 1.2217 41 1 2.3919 -2.6461 3.0066 42 1 1.9801 -6.3406 2.8437 43 1 3.1758 -5.0164 3.1872 44 1 0.1830 -6.5193 4.9193 45 1 1.6645 -5.0565 7.0058 46 1 -0.0651 -4.8320 6.6507 47 1 0.2214 -5.6364 9.2067 48 1 -0.8376 -8.2941 12.6974 49 1 -0.3472 -3.5979 3.6761 50 1 -0.5020 -5.3412 3.1882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480156094.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:18 Heat of formation + Delta-G solvation = -120.852778 kcal Electronic energy + Delta-G solvation = -29668.085618 eV Core-core repulsion = 25501.768357 eV Total energy + Delta-G solvation = -4166.317261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.99496 -40.63405 -40.01303 -38.76508 -36.17879 -35.53773 -35.24150 -33.99329 -33.69596 -32.49342 -28.69509 -27.94888 -26.70699 -26.62439 -25.86410 -24.08934 -23.43824 -22.70722 -21.33758 -20.72469 -20.61114 -20.05185 -17.98862 -17.66561 -17.27885 -17.15065 -17.03362 -16.91117 -16.49102 -16.21459 -16.02884 -15.80403 -15.50207 -15.24779 -15.03629 -14.80254 -14.50160 -14.44217 -14.08536 -13.85424 -13.59497 -13.47775 -13.38261 -13.24896 -13.15770 -12.92616 -12.85709 -12.58032 -12.53912 -12.41228 -12.02121 -11.98273 -11.73967 -11.57028 -11.51519 -11.45897 -11.33039 -10.63344 -10.41994 -10.25045 -10.20621 -10.01367 -9.23377 -8.41175 -6.02405 1.30279 1.36118 1.45311 1.59148 1.96161 2.12690 2.23481 2.75285 2.95278 3.15271 3.36630 3.52538 3.60530 3.66551 3.72360 3.77392 3.95558 3.96882 4.07636 4.14223 4.17971 4.28972 4.47548 4.50158 4.53615 4.56291 4.60892 4.69239 4.73367 4.77652 4.81875 4.85949 4.86630 4.97462 4.98164 5.04026 5.10662 5.12900 5.13928 5.22456 5.45684 5.53480 5.67472 5.92801 6.13925 6.24335 6.37970 6.56001 6.60034 6.88275 7.28219 7.39956 7.96957 8.76490 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.001840 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.655559 B =15215.395768 C =15568.565501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.100 4.100 3 H 0.095 0.905 4 C 0.053 3.947 5 O -0.402 6.402 6 C 0.050 3.950 7 C -0.141 4.141 8 C -0.106 4.106 9 H 0.126 0.874 10 C 0.517 3.483 11 O -0.564 6.564 12 N -0.698 5.698 13 C 0.127 3.873 14 H 0.085 0.915 15 C -0.126 4.126 16 C 0.071 3.929 17 H 0.119 0.881 18 N -0.676 5.676 19 C 0.062 3.938 20 C 0.446 3.554 21 O -0.616 6.616 22 N -0.591 5.591 23 C -0.329 4.329 24 H 0.054 0.946 25 C -0.018 4.018 26 N -0.935 5.935 27 Si 0.967 3.033 28 H -0.258 1.258 29 H -0.276 1.276 30 H -0.228 1.228 31 C -0.176 4.176 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.034 0.966 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.415 0.585 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.345 0.655 45 H 0.117 0.883 46 H 0.076 0.924 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.072 0.928 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.878 25.845 -21.299 34.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.119 4.119 3 H 0.113 0.887 4 C -0.023 4.023 5 O -0.321 6.321 6 C -0.027 4.027 7 C -0.178 4.178 8 C -0.127 4.127 9 H 0.144 0.856 10 C 0.305 3.695 11 O -0.444 6.444 12 N -0.350 5.350 13 C 0.021 3.979 14 H 0.103 0.897 15 C -0.165 4.165 16 C -0.039 4.039 17 H 0.137 0.863 18 N -0.307 5.307 19 C -0.070 4.070 20 C 0.234 3.766 21 O -0.501 6.501 22 N -0.232 5.232 23 C -0.459 4.459 24 H 0.072 0.928 25 C -0.216 4.216 26 N -0.576 5.576 27 Si 0.787 3.213 28 H -0.182 1.182 29 H -0.201 1.201 30 H -0.151 1.151 31 C -0.216 4.216 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.052 0.948 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.252 0.748 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.165 0.835 45 H 0.135 0.865 46 H 0.094 0.906 47 H 0.226 0.774 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.052 24.633 -22.055 34.280 hybrid contribution -1.222 0.285 1.205 1.740 sum 7.830 24.917 -20.849 33.420 Atomic orbital electron populations 1.22033 0.94278 1.03501 1.01964 1.21521 0.96739 0.99893 0.93790 0.88712 1.22883 0.80137 1.00917 0.98405 1.87886 1.21151 1.76499 1.46599 1.22754 1.00039 0.93990 0.85875 1.22218 0.92427 1.04220 0.98966 1.21541 0.97337 0.92081 1.01723 0.85636 1.21044 0.79821 0.87887 0.80771 1.90590 1.38041 1.77178 1.38558 1.45641 1.50423 1.12556 1.26360 1.21540 0.95108 0.82630 0.98648 0.89660 1.23386 0.99710 0.99379 0.93983 1.23262 0.96328 0.92759 0.91596 0.86347 1.60040 1.45456 1.24562 1.00644 1.21690 1.03112 0.93131 0.89058 1.21103 0.81286 0.91456 0.82761 1.90549 1.56836 1.27978 1.74736 1.42036 1.64280 1.08764 1.08165 1.19004 1.46526 0.89052 0.91290 0.92833 1.26165 0.95962 1.03840 0.95652 1.69814 1.47461 1.33331 1.06957 0.85337 0.80332 0.76994 0.78673 1.18213 1.20114 1.15141 1.24124 0.97640 1.02312 0.97561 0.91436 0.92139 0.92382 0.92792 0.88880 0.94759 0.87121 0.87961 0.88358 0.74783 0.89354 0.89245 0.83522 0.86481 0.90568 0.77412 0.91165 0.90974 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.87 71.98 0.64 -1.64 16 2 C -0.10 -1.27 2.67 -10.70 -0.03 -1.30 16 3 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 4 C 0.05 0.89 5.86 72.01 0.42 1.31 16 5 O -0.40 -7.20 10.77 -148.98 -1.60 -8.80 16 6 C 0.05 0.62 6.62 72.01 0.48 1.09 16 7 C -0.14 -0.96 5.57 30.68 0.17 -0.78 16 8 C -0.11 -1.02 2.62 -11.42 -0.03 -1.05 16 9 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 10 C 0.52 7.73 5.52 87.66 0.48 8.21 16 11 O -0.56 -12.87 10.96 -3.02 -0.03 -12.90 16 12 N -0.70 -7.87 5.14 -440.03 -2.26 -10.13 16 13 C 0.13 1.96 4.32 45.52 0.20 2.16 16 14 H 0.09 1.69 7.46 -2.39 -0.02 1.67 16 15 C -0.13 -1.94 7.63 31.12 0.24 -1.70 16 16 C 0.07 1.20 4.06 45.44 0.18 1.38 16 17 H 0.12 1.45 7.87 -2.39 -0.02 1.43 16 18 N -0.68 -18.02 6.24 -492.86 -3.08 -21.10 16 19 C 0.06 1.74 6.01 85.56 0.51 2.26 16 20 C 0.45 19.57 7.82 87.66 0.69 20.26 16 21 O -0.62 -33.83 15.78 -3.07 -0.05 -33.88 16 22 N -0.59 -27.21 5.09 -306.99 -1.56 -28.78 16 23 C -0.33 -19.16 10.16 84.04 0.85 -18.31 16 24 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 25 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 26 N -0.94 -56.14 13.96 21.66 0.30 -55.84 16 27 Si 0.97 37.91 27.74 68.60 1.90 39.82 16 28 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 29 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 30 H -0.23 -7.37 6.52 99.48 0.65 -6.72 16 31 C -0.18 -2.94 7.49 31.12 0.23 -2.71 16 32 H 0.07 1.34 5.27 -2.39 -0.01 1.32 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 1.17 5.80 -2.39 -0.01 1.15 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.03 0.52 7.38 -2.39 -0.02 0.50 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 0.24 7.52 -2.39 -0.02 0.22 16 40 H 0.10 0.49 8.14 -2.39 -0.02 0.48 16 41 H 0.41 2.27 8.12 -92.70 -0.75 1.51 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.35 10.27 7.90 -89.69 -0.71 9.56 16 45 H 0.12 2.64 8.13 -2.38 -0.02 2.62 16 46 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.39 14.63 5.76 -92.71 -0.53 14.10 16 48 H 0.28 15.28 8.31 -92.70 -0.77 14.51 16 49 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 50 H 0.08 1.60 7.82 -2.39 -0.02 1.58 16 Total: -1.00 -81.32 391.42 -1.95 -83.27 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: -1.08 Total: 39.68 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 5.51 Total: 8.67 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -6.60 Total: -115.85 kcal Atomic # 8 Polarization: -53.89 SS G_CDS: -1.69 Total: -55.58 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.90 Total: 39.82 kcal Total: -81.32 -1.95 -83.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480156094.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.585 kcal (2) G-P(sol) polarization free energy of solvation -81.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds