Wall clock time and date at job start Tue Mar 31 2020 23:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.57123 * 2 1 4 4 C 1.53089 * 109.52312 * 120.15653 * 2 1 3 5 5 O 1.42900 * 109.42557 * 177.51987 * 4 2 1 6 6 C 1.42906 * 114.09948 * 298.83877 * 5 4 2 7 7 C 1.53096 * 109.41417 * 61.15545 * 6 5 4 8 8 C 1.53170 * 109.16413 * 302.39585 * 7 6 5 9 9 H 1.08999 * 109.54725 * 176.93454 * 8 7 6 10 10 C 1.50706 * 109.54369 * 297.10939 * 8 7 6 11 11 O 1.21286 * 119.99763 * 59.65201 * 10 8 7 12 12 N 1.34770 * 120.00578 * 239.65079 * 10 8 7 13 13 C 1.46498 * 120.00365 * 179.97438 * 12 10 8 14 14 H 1.08997 * 112.84838 * 334.67013 * 13 12 10 15 15 C 1.53786 * 113.61288 * 105.86615 * 13 12 10 16 16 C 1.54052 * 86.98466 * 89.16198 * 15 13 12 17 17 H 1.08997 * 113.68899 * 270.87317 * 16 15 13 18 18 N 1.46901 * 113.61895 * 139.97715 * 16 15 13 19 19 C 1.46907 * 110.99690 * 107.50169 * 18 16 15 20 20 C 1.50702 * 109.46961 * 179.97438 * 19 18 16 21 21 O 1.21292 * 119.99762 * 0.02562 * 20 19 18 22 22 N 1.34772 * 120.00021 * 180.02562 * 20 19 18 23 23 C 1.37094 * 119.99840 * 180.02562 * 22 20 19 24 24 H 1.07998 * 120.00331 * 0.02562 * 23 22 20 25 25 C 1.38959 * 119.99788 * 180.02562 * 23 22 20 26 26 N 1.31412 * 119.99696 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 120.00108 * 359.97438 * 25 23 22 28 28 H 1.48502 * 109.46926 * 89.99643 * 27 25 23 29 29 H 1.48498 * 109.47312 * 209.99857 * 27 25 23 30 30 H 1.48503 * 109.46716 * 330.00172 * 27 25 23 31 31 C 1.53781 * 113.61324 * 203.47225 * 13 12 10 32 32 H 1.09001 * 109.47088 * 305.46142 * 1 2 3 33 33 H 1.09000 * 109.46809 * 65.45988 * 1 2 3 34 34 H 1.08995 * 109.46906 * 185.46302 * 1 2 3 35 35 H 1.08998 * 109.47498 * 57.53299 * 4 2 1 36 36 H 1.08998 * 109.48115 * 297.50995 * 4 2 1 37 37 H 1.08996 * 109.47977 * 181.13967 * 6 5 4 38 38 H 1.08996 * 109.47861 * 301.16301 * 6 5 4 39 39 H 1.09000 * 109.52144 * 62.29870 * 7 6 5 40 40 H 1.08990 * 109.52473 * 182.48352 * 7 6 5 41 41 H 0.97003 * 119.99657 * 0.02562 * 12 10 8 42 42 H 1.08997 * 113.61155 * 203.66678 * 15 13 12 43 43 H 1.08997 * 113.61022 * 334.56890 * 15 13 12 44 44 H 1.00893 * 111.00471 * 231.45611 * 18 16 15 45 45 H 1.08995 * 109.47610 * 299.99995 * 19 18 16 46 46 H 1.08999 * 109.46830 * 60.00530 * 19 18 16 47 47 H 0.96996 * 120.00258 * 0.02562 * 22 20 19 48 48 H 0.97001 * 119.99924 * 179.97438 * 26 25 23 49 49 H 1.08995 * 113.61765 * 25.43728 * 31 13 12 50 50 H 1.09008 * 113.61352 * 156.25315 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7248 1.2476 5 8 3.4695 -0.7743 1.2166 6 6 4.0046 -1.4816 0.0961 7 6 3.5721 -0.7872 -1.1979 8 6 2.0425 -0.7253 -1.2483 9 1 1.7286 -0.1839 -2.1408 10 6 1.4822 -2.1239 -1.2842 11 8 1.7189 -2.8953 -0.3786 12 7 0.7183 -2.5176 -2.3223 13 6 0.1742 -3.8773 -2.3573 14 1 0.7679 -4.5858 -1.7797 15 6 -1.3322 -3.9460 -2.0557 16 6 -1.5608 -3.7584 -3.5676 17 1 -1.6306 -2.7146 -3.8737 18 7 -2.6499 -4.5847 -4.1052 19 6 -3.8250 -3.7632 -4.4256 20 6 -4.9187 -4.6432 -4.9738 21 8 -4.7373 -5.8372 -5.0860 22 7 -6.0983 -4.1035 -5.3393 23 6 -7.0934 -4.9041 -5.8375 24 1 -6.9323 -5.9674 -5.9366 25 6 -8.3094 -4.3475 -6.2148 26 7 -9.2631 -5.1149 -6.6928 27 14 -8.5884 -2.5085 -6.0427 28 1 -8.1704 -1.8253 -7.2931 29 1 -10.0290 -2.2475 -5.7938 30 1 -7.7876 -1.9909 -4.9042 31 6 -0.1646 -4.3689 -3.7745 32 1 -0.3633 0.5962 0.8370 33 1 -0.3633 0.4268 -0.9349 34 1 -0.3633 -1.0230 0.0978 35 1 1.6432 -1.7392 1.2676 36 1 1.7158 -0.1886 2.1388 37 1 5.0928 -1.4904 0.1578 38 1 3.6320 -2.5059 0.1012 39 1 3.9785 0.2239 -1.2221 40 1 3.9423 -1.3501 -2.0547 41 1 0.5293 -1.9007 -3.0467 42 1 -1.6588 -4.9163 -1.6818 43 1 -1.6948 -3.1145 -1.4514 44 1 -2.3431 -5.1071 -4.9120 45 1 -4.1773 -3.2651 -3.5225 46 1 -3.5532 -3.0154 -5.1706 47 1 -6.2432 -3.1486 -5.2499 48 1 -10.1121 -4.7265 -6.9559 49 1 0.4148 -3.8787 -4.5569 50 1 -0.1712 -5.4548 -3.8701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480156095.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:22 Heat of formation + Delta-G solvation = -95.487827 kcal Electronic energy + Delta-G solvation = -29739.704950 eV Core-core repulsion = 25574.487596 eV Total energy + Delta-G solvation = -4165.217354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32712 -39.70280 -38.43003 -37.81009 -34.88057 -34.69910 -33.90341 -32.74844 -32.32702 -31.66203 -27.59119 -27.10663 -26.02641 -25.83552 -24.31133 -23.08236 -22.71204 -22.07014 -20.16795 -19.66755 -19.29475 -18.33503 -17.40197 -16.62498 -16.43795 -16.39022 -15.98164 -15.77716 -15.42620 -15.15419 -14.89794 -14.74405 -14.67524 -14.35453 -13.81933 -13.70691 -13.39619 -13.19993 -13.07074 -12.80615 -12.65288 -12.59743 -12.42534 -12.28245 -12.18120 -12.07791 -11.98955 -11.54374 -11.43663 -11.20285 -11.09664 -10.97403 -10.72599 -10.66364 -10.60663 -10.08691 -10.00113 -9.60343 -9.37416 -9.32028 -8.61043 -8.24327 -8.18609 -6.33737 -3.85246 2.21952 2.73797 2.99750 3.03409 3.12294 3.63926 3.70669 4.06273 4.07623 4.10390 4.17061 4.23839 4.29200 4.36707 4.50120 4.65086 4.69913 4.81003 4.88989 4.95996 4.98201 5.07752 5.18344 5.18744 5.25501 5.29274 5.30596 5.43543 5.46718 5.50345 5.54833 5.62921 5.64490 5.67351 5.70391 5.72242 5.75351 5.85763 5.90447 5.93285 5.99913 6.33147 6.95620 7.09396 7.12238 7.51928 7.55617 7.86257 8.11735 8.56822 8.92189 9.39529 9.79554 10.79354 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021691 B = 0.001923 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.537601 B =14555.189359 C =15363.972805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 H 0.087 0.913 4 C 0.054 3.946 5 O -0.382 6.382 6 C 0.049 3.951 7 C -0.141 4.141 8 C -0.105 4.105 9 H 0.090 0.910 10 C 0.522 3.478 11 O -0.532 6.532 12 N -0.710 5.710 13 C 0.117 3.883 14 H 0.105 0.895 15 C -0.134 4.134 16 C 0.059 3.941 17 H 0.068 0.932 18 N -0.655 5.655 19 C 0.048 3.952 20 C 0.449 3.551 21 O -0.565 6.565 22 N -0.590 5.590 23 C -0.305 4.305 24 H 0.120 0.880 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.880 3.120 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.269 1.269 31 C -0.147 4.147 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.399 0.601 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.352 0.648 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.071 0.929 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.469 14.674 10.399 31.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.130 4.130 3 H 0.106 0.894 4 C -0.023 4.023 5 O -0.301 6.301 6 C -0.028 4.028 7 C -0.179 4.179 8 C -0.127 4.127 9 H 0.108 0.892 10 C 0.309 3.691 11 O -0.409 6.409 12 N -0.360 5.360 13 C 0.011 3.989 14 H 0.123 0.877 15 C -0.174 4.174 16 C -0.052 4.052 17 H 0.086 0.914 18 N -0.288 5.288 19 C -0.085 4.085 20 C 0.235 3.765 21 O -0.446 6.446 22 N -0.230 5.230 23 C -0.434 4.434 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.521 5.521 27 Si 0.707 3.293 28 H -0.197 1.197 29 H -0.201 1.201 30 H -0.195 1.195 31 C -0.186 4.186 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.234 0.766 42 H 0.119 0.881 43 H 0.084 0.916 44 H 0.173 0.827 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.089 0.911 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 25.402 13.159 11.626 30.880 hybrid contribution -0.610 2.276 -1.524 2.806 sum 24.792 15.435 10.102 30.902 Atomic orbital electron populations 1.21836 0.93960 1.02625 1.02525 1.21673 0.96596 1.00137 0.94597 0.89423 1.22864 0.81258 1.01632 0.96501 1.87872 1.20366 1.76284 1.45537 1.22783 0.98480 0.96883 0.84639 1.22079 0.93003 1.02887 0.99899 1.21428 0.97155 0.93501 1.00604 0.89199 1.20566 0.77643 0.89290 0.81631 1.90627 1.58896 1.55208 1.36140 1.45849 1.51811 1.14423 1.23936 1.21783 0.95355 0.83761 0.97957 0.87738 1.23582 0.94082 1.03513 0.96213 1.23157 0.89850 0.95677 0.96467 0.91372 1.60200 1.04453 1.25542 1.38578 1.21767 0.91937 0.94823 1.00000 1.19718 0.83701 0.88994 0.84132 1.90568 1.80917 1.15359 1.57792 1.42210 1.13348 1.08993 1.58432 1.19435 0.91250 0.94672 1.38056 0.86272 1.25051 0.95522 0.98346 0.97298 1.69622 1.05027 1.35312 1.42089 0.86665 0.78829 0.85182 0.78667 1.19677 1.20134 1.19501 1.23598 0.96099 1.02778 0.96115 0.91772 0.92098 0.92206 0.90272 0.89370 0.89375 0.90365 0.90041 0.90609 0.76622 0.88064 0.91602 0.82698 0.89572 0.93849 0.79723 0.91595 0.91075 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.80 37.16 0.33 -0.66 16 2 C -0.11 -0.76 2.70 -90.47 -0.24 -1.01 16 3 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.05 0.48 5.84 37.20 0.22 0.70 16 5 O -0.38 -3.95 10.77 -35.23 -0.38 -4.33 16 6 C 0.05 0.42 6.55 37.21 0.24 0.66 16 7 C -0.14 -0.89 5.63 -26.59 -0.15 -1.04 16 8 C -0.11 -0.68 2.69 -91.58 -0.25 -0.92 16 9 H 0.09 0.39 7.92 -51.93 -0.41 -0.02 16 10 C 0.52 4.43 5.29 -10.99 -0.06 4.37 16 11 O -0.53 -6.24 11.27 5.55 0.06 -6.18 16 12 N -0.71 -5.08 5.26 -53.02 -0.28 -5.36 16 13 C 0.12 1.02 4.30 -67.12 -0.29 0.73 16 14 H 0.10 1.05 7.50 -51.93 -0.39 0.67 16 15 C -0.13 -1.38 7.70 -25.77 -0.20 -1.58 16 16 C 0.06 0.60 4.03 -66.76 -0.27 0.34 16 17 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 18 N -0.66 -9.45 6.19 -106.98 -0.66 -10.11 16 19 C 0.05 0.75 6.01 -4.97 -0.03 0.72 16 20 C 0.45 10.01 7.82 -10.99 -0.09 9.93 16 21 O -0.56 -14.99 15.78 5.55 0.09 -14.90 16 22 N -0.59 -13.89 5.09 -10.96 -0.06 -13.95 16 23 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 24 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 25 C 0.04 1.11 5.50 -17.46 -0.10 1.02 16 26 N -0.88 -25.59 13.96 55.50 0.77 -24.82 16 27 Si 0.88 19.14 27.74 -169.99 -4.71 14.42 16 28 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 29 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 30 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 31 C -0.15 -1.22 7.39 -25.92 -0.19 -1.42 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.49 7.35 -51.93 -0.38 0.10 16 35 H 0.08 0.86 5.70 -51.93 -0.30 0.56 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.81 5.70 -51.93 -0.30 0.51 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.40 2.00 8.54 -40.82 -0.35 1.65 16 42 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.35 5.25 8.24 -39.30 -0.32 4.93 16 45 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.04 0.59 8.13 -51.93 -0.42 0.17 16 47 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 48 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 LS Contribution 393.30 15.07 5.93 5.93 Total: -1.00 -34.06 393.30 -8.60 -42.66 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -8.14 Total: 13.53 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -1.22 Total: 3.10 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.22 Total: -54.23 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.23 Total: -25.41 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.06 -8.60 -42.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480156095.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.829 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds