Wall clock time and date at job start Tue Mar 31 2020 23:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.57123 * 2 1 4 4 C 1.53089 * 109.52312 * 120.15653 * 2 1 3 5 5 O 1.42900 * 109.42557 * 177.51987 * 4 2 1 6 6 C 1.42906 * 114.09948 * 298.83877 * 5 4 2 7 7 C 1.53096 * 109.41417 * 61.15545 * 6 5 4 8 8 C 1.53170 * 109.16413 * 302.39585 * 7 6 5 9 9 H 1.08999 * 109.54725 * 176.93454 * 8 7 6 10 10 C 1.50706 * 109.54369 * 297.10939 * 8 7 6 11 11 O 1.21286 * 119.99763 * 59.65201 * 10 8 7 12 12 N 1.34770 * 120.00578 * 239.65079 * 10 8 7 13 13 C 1.46498 * 120.00365 * 179.97438 * 12 10 8 14 14 H 1.08997 * 112.84838 * 334.67013 * 13 12 10 15 15 C 1.53786 * 113.61288 * 105.86615 * 13 12 10 16 16 C 1.54052 * 86.98466 * 89.16198 * 15 13 12 17 17 H 1.08997 * 113.68899 * 270.87317 * 16 15 13 18 18 N 1.46901 * 113.61895 * 139.97715 * 16 15 13 19 19 C 1.46907 * 110.99690 * 107.50169 * 18 16 15 20 20 C 1.50702 * 109.46961 * 179.97438 * 19 18 16 21 21 O 1.21292 * 119.99762 * 0.02562 * 20 19 18 22 22 N 1.34772 * 120.00021 * 180.02562 * 20 19 18 23 23 C 1.37094 * 119.99840 * 180.02562 * 22 20 19 24 24 H 1.07998 * 120.00331 * 0.02562 * 23 22 20 25 25 C 1.38959 * 119.99788 * 180.02562 * 23 22 20 26 26 N 1.31412 * 119.99696 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 120.00108 * 359.97438 * 25 23 22 28 28 H 1.48502 * 109.46926 * 89.99643 * 27 25 23 29 29 H 1.48498 * 109.47312 * 209.99857 * 27 25 23 30 30 H 1.48503 * 109.46716 * 330.00172 * 27 25 23 31 31 C 1.53781 * 113.61324 * 203.47225 * 13 12 10 32 32 H 1.09001 * 109.47088 * 305.46142 * 1 2 3 33 33 H 1.09000 * 109.46809 * 65.45988 * 1 2 3 34 34 H 1.08995 * 109.46906 * 185.46302 * 1 2 3 35 35 H 1.08998 * 109.47498 * 57.53299 * 4 2 1 36 36 H 1.08998 * 109.48115 * 297.50995 * 4 2 1 37 37 H 1.08996 * 109.47977 * 181.13967 * 6 5 4 38 38 H 1.08996 * 109.47861 * 301.16301 * 6 5 4 39 39 H 1.09000 * 109.52144 * 62.29870 * 7 6 5 40 40 H 1.08990 * 109.52473 * 182.48352 * 7 6 5 41 41 H 0.97003 * 119.99657 * 0.02562 * 12 10 8 42 42 H 1.08997 * 113.61155 * 203.66678 * 15 13 12 43 43 H 1.08997 * 113.61022 * 334.56890 * 15 13 12 44 44 H 1.00893 * 111.00471 * 231.45611 * 18 16 15 45 45 H 1.08995 * 109.47610 * 299.99995 * 19 18 16 46 46 H 1.08999 * 109.46830 * 60.00530 * 19 18 16 47 47 H 0.96996 * 120.00258 * 0.02562 * 22 20 19 48 48 H 0.97001 * 119.99924 * 179.97438 * 26 25 23 49 49 H 1.08995 * 113.61765 * 25.43728 * 31 13 12 50 50 H 1.09008 * 113.61352 * 156.25315 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7248 1.2476 5 8 3.4695 -0.7743 1.2166 6 6 4.0046 -1.4816 0.0961 7 6 3.5721 -0.7872 -1.1979 8 6 2.0425 -0.7253 -1.2483 9 1 1.7286 -0.1839 -2.1408 10 6 1.4822 -2.1239 -1.2842 11 8 1.7189 -2.8953 -0.3786 12 7 0.7183 -2.5176 -2.3223 13 6 0.1742 -3.8773 -2.3573 14 1 0.7679 -4.5858 -1.7797 15 6 -1.3322 -3.9460 -2.0557 16 6 -1.5608 -3.7584 -3.5676 17 1 -1.6306 -2.7146 -3.8737 18 7 -2.6499 -4.5847 -4.1052 19 6 -3.8250 -3.7632 -4.4256 20 6 -4.9187 -4.6432 -4.9738 21 8 -4.7373 -5.8372 -5.0860 22 7 -6.0983 -4.1035 -5.3393 23 6 -7.0934 -4.9041 -5.8375 24 1 -6.9323 -5.9674 -5.9366 25 6 -8.3094 -4.3475 -6.2148 26 7 -9.2631 -5.1149 -6.6928 27 14 -8.5884 -2.5085 -6.0427 28 1 -8.1704 -1.8253 -7.2931 29 1 -10.0290 -2.2475 -5.7938 30 1 -7.7876 -1.9909 -4.9042 31 6 -0.1646 -4.3689 -3.7745 32 1 -0.3633 0.5962 0.8370 33 1 -0.3633 0.4268 -0.9349 34 1 -0.3633 -1.0230 0.0978 35 1 1.6432 -1.7392 1.2676 36 1 1.7158 -0.1886 2.1388 37 1 5.0928 -1.4904 0.1578 38 1 3.6320 -2.5059 0.1012 39 1 3.9785 0.2239 -1.2221 40 1 3.9423 -1.3501 -2.0547 41 1 0.5293 -1.9007 -3.0467 42 1 -1.6588 -4.9163 -1.6818 43 1 -1.6948 -3.1145 -1.4514 44 1 -2.3431 -5.1071 -4.9120 45 1 -4.1773 -3.2651 -3.5225 46 1 -3.5532 -3.0154 -5.1706 47 1 -6.2432 -3.1486 -5.2499 48 1 -10.1121 -4.7265 -6.9559 49 1 0.4148 -3.8787 -4.5569 50 1 -0.1712 -5.4548 -3.8701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480156095.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:21 Heat of formation + Delta-G solvation = -123.596664 kcal Electronic energy + Delta-G solvation = -29740.923841 eV Core-core repulsion = 25574.487596 eV Total energy + Delta-G solvation = -4166.436245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.96287 -40.59980 -40.01462 -38.62125 -36.16623 -35.50648 -35.38414 -33.78227 -33.46719 -32.97972 -28.73656 -27.95952 -26.75332 -26.66656 -25.80033 -24.05437 -23.28829 -22.74018 -21.32115 -20.78144 -20.47831 -20.04164 -18.12992 -17.69483 -17.26846 -17.06425 -17.02767 -16.83766 -16.50463 -16.38827 -15.96508 -15.74677 -15.49981 -15.36593 -14.97482 -14.81320 -14.50386 -14.36616 -14.03291 -13.97181 -13.62455 -13.39049 -13.30337 -13.29557 -13.03373 -12.92154 -12.89427 -12.70680 -12.49657 -12.41707 -12.00174 -11.98690 -11.64458 -11.61324 -11.51941 -11.48638 -11.45148 -10.69270 -10.42263 -10.25375 -10.04809 -9.99319 -9.29990 -8.41528 -6.02668 1.30142 1.35557 1.44946 1.59424 1.95648 2.13495 2.23097 2.75232 3.01400 3.14984 3.41773 3.55905 3.56990 3.59967 3.70535 3.74236 3.96309 3.97695 4.13054 4.16341 4.17049 4.36653 4.43414 4.49659 4.55225 4.56525 4.57995 4.66851 4.70338 4.80928 4.85085 4.85395 4.87773 4.94411 5.01025 5.08306 5.08594 5.12296 5.14299 5.24508 5.33262 5.52217 5.62655 5.92368 6.13843 6.29680 6.42125 6.57231 6.59669 6.87890 7.28597 7.39549 7.96428 8.76137 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021691 B = 0.001923 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.537601 B =14555.189359 C =15363.972805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 H 0.103 0.897 4 C 0.050 3.950 5 O -0.401 6.401 6 C 0.043 3.957 7 C -0.136 4.136 8 C -0.102 4.102 9 H 0.123 0.877 10 C 0.518 3.482 11 O -0.569 6.569 12 N -0.697 5.697 13 C 0.127 3.873 14 H 0.085 0.915 15 C -0.138 4.138 16 C 0.063 3.937 17 H 0.096 0.904 18 N -0.677 5.677 19 C 0.063 3.937 20 C 0.446 3.554 21 O -0.616 6.616 22 N -0.591 5.591 23 C -0.330 4.330 24 H 0.054 0.946 25 C -0.018 4.018 26 N -0.935 5.935 27 Si 0.967 3.033 28 H -0.255 1.255 29 H -0.276 1.276 30 H -0.231 1.231 31 C -0.135 4.135 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.415 0.585 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.347 0.653 45 H 0.108 0.892 46 H 0.082 0.918 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.095 0.905 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.865 19.519 9.886 34.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 H 0.121 0.879 4 C -0.026 4.026 5 O -0.320 6.320 6 C -0.034 4.034 7 C -0.174 4.174 8 C -0.123 4.123 9 H 0.141 0.859 10 C 0.307 3.693 11 O -0.449 6.449 12 N -0.349 5.349 13 C 0.020 3.980 14 H 0.104 0.896 15 C -0.178 4.178 16 C -0.046 4.046 17 H 0.114 0.886 18 N -0.310 5.310 19 C -0.069 4.069 20 C 0.234 3.766 21 O -0.500 6.500 22 N -0.232 5.232 23 C -0.459 4.459 24 H 0.072 0.928 25 C -0.216 4.216 26 N -0.575 5.575 27 Si 0.787 3.213 28 H -0.179 1.179 29 H -0.202 1.202 30 H -0.154 1.154 31 C -0.173 4.173 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.252 0.748 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.167 0.833 45 H 0.126 0.874 46 H 0.100 0.900 47 H 0.226 0.774 48 H 0.088 0.912 49 H 0.113 0.887 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 26.826 18.033 11.107 34.178 hybrid contribution -0.982 0.580 -1.301 1.730 sum 25.844 18.613 9.805 33.324 Atomic orbital electron populations 1.21810 0.93564 1.01487 1.03688 1.21647 0.96823 1.00476 0.93569 0.87900 1.22894 0.80770 1.00681 0.98287 1.87835 1.21077 1.76429 1.46704 1.22865 0.99031 0.95871 0.85611 1.22071 0.93024 1.03589 0.98735 1.21504 0.97031 0.92094 1.01717 0.85859 1.21034 0.77258 0.89925 0.81108 1.90637 1.60159 1.56473 1.37618 1.45712 1.51124 1.13887 1.24128 1.21532 0.94027 0.84469 0.97959 0.89637 1.23543 0.95317 1.02337 0.96579 1.23276 0.89178 0.96570 0.95617 0.88588 1.60161 1.05485 1.26781 1.38595 1.21686 0.89909 0.93874 1.01466 1.21075 0.84351 0.89204 0.81925 1.90547 1.81937 1.18301 1.59233 1.42034 1.12907 1.09479 1.58827 1.19004 0.93642 0.92775 1.40464 0.92811 1.26165 0.94214 1.05396 0.95826 1.69811 1.05886 1.38662 1.43169 0.85339 0.79120 0.76310 0.80572 1.17918 1.20166 1.15400 1.23496 0.95085 1.02407 0.96329 0.91341 0.90322 0.94315 0.92835 0.88819 0.88311 0.92804 0.88438 0.89424 0.74798 0.90350 0.91574 0.83261 0.87408 0.89989 0.77437 0.91153 0.88682 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.80 71.98 0.63 -0.91 16 2 C -0.11 -1.20 2.70 -10.69 -0.03 -1.23 16 3 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 4 C 0.05 0.88 5.84 72.01 0.42 1.30 16 5 O -0.40 -8.15 10.77 -148.98 -1.60 -9.76 16 6 C 0.04 0.70 6.55 72.01 0.47 1.17 16 7 C -0.14 -1.37 5.63 30.68 0.17 -1.20 16 8 C -0.10 -1.00 2.69 -11.41 -0.03 -1.03 16 9 H 0.12 0.42 7.92 -2.39 -0.02 0.40 16 10 C 0.52 7.91 5.29 87.66 0.46 8.37 16 11 O -0.57 -13.51 11.27 -3.05 -0.03 -13.54 16 12 N -0.70 -8.04 5.26 -440.03 -2.32 -10.35 16 13 C 0.13 2.02 4.30 45.52 0.20 2.21 16 14 H 0.09 1.74 7.50 -2.39 -0.02 1.72 16 15 C -0.14 -2.66 7.70 31.21 0.24 -2.42 16 16 C 0.06 1.10 4.03 45.53 0.18 1.28 16 17 H 0.10 1.21 7.87 -2.39 -0.02 1.19 16 18 N -0.68 -18.23 6.19 -492.36 -3.05 -21.28 16 19 C 0.06 1.79 6.01 85.56 0.51 2.31 16 20 C 0.45 19.70 7.82 87.66 0.69 20.39 16 21 O -0.62 -33.84 15.78 -3.07 -0.05 -33.89 16 22 N -0.59 -27.35 5.09 -306.98 -1.56 -28.92 16 23 C -0.33 -19.21 10.16 84.04 0.85 -18.35 16 24 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 25 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 26 N -0.93 -56.17 13.96 21.67 0.30 -55.86 16 27 Si 0.97 38.04 27.74 68.60 1.90 39.94 16 28 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 29 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 30 H -0.23 -7.57 6.52 99.48 0.65 -6.92 16 31 C -0.13 -1.92 7.39 31.12 0.23 -1.69 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.04 0.57 7.35 -2.39 -0.02 0.56 16 35 H 0.05 1.22 5.70 -2.39 -0.01 1.21 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.15 5.70 -2.39 -0.01 1.14 16 39 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.41 2.27 8.54 -92.71 -0.79 1.48 16 42 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.35 9.95 8.24 -89.70 -0.74 9.21 16 45 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 46 H 0.08 1.77 8.13 -2.39 -0.02 1.75 16 47 H 0.39 14.75 5.76 -92.71 -0.53 14.21 16 48 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 49 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -82.17 393.30 -2.08 -84.25 By element: Atomic # 1 Polarization: 40.85 SS G_CDS: -1.15 Total: 39.71 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 5.47 Total: 9.70 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -6.62 Total: -116.41 kcal Atomic # 8 Polarization: -55.50 SS G_CDS: -1.69 Total: -57.19 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.90 Total: 39.94 kcal Total: -82.17 -2.08 -84.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480156095.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.346 kcal (2) G-P(sol) polarization free energy of solvation -82.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds