Wall clock time and date at job start Tue Mar 31 2020 23:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.41743 * 2 1 4 4 C 1.54473 * 110.37050 * 237.69140 * 2 1 3 5 5 C 1.54686 * 104.07738 * 217.09891 * 4 2 1 6 6 C 1.54482 * 103.97849 * 0.13697 * 5 4 2 7 7 H 1.08998 * 110.36627 * 264.96256 * 6 5 4 8 8 C 1.52997 * 110.36895 * 142.73950 * 6 5 4 9 9 C 1.53004 * 109.47000 * 176.54857 * 8 6 5 10 10 C 1.50700 * 109.47208 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99803 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99675 * 180.27843 * 10 9 8 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 9 14 14 C 1.53931 * 113.73267 * 253.76054 * 13 12 10 15 15 N 1.48189 * 86.10534 * 221.95785 * 14 13 12 16 16 C 1.46900 * 111.07295 * 137.51898 * 15 14 13 17 17 C 1.50703 * 109.46955 * 90.57073 * 16 15 14 18 18 O 1.21292 * 119.99905 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99994 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00379 * 180.02562 * 19 17 16 21 21 H 1.08007 * 119.99384 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00464 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99848 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00254 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46875 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47204 * 119.99961 * 24 22 20 27 27 H 1.48499 * 109.47187 * 240.00216 * 24 22 20 28 28 C 1.47962 * 90.79643 * 24.59996 * 15 14 13 29 29 O 1.44418 * 104.89983 * 23.85238 * 6 5 4 30 30 H 1.08997 * 109.47018 * 299.14983 * 1 2 3 31 31 H 1.09007 * 109.46821 * 59.14023 * 1 2 3 32 32 H 1.08992 * 109.47333 * 179.14028 * 1 2 3 33 33 H 1.09002 * 110.51817 * 335.83547 * 4 2 1 34 34 H 1.09007 * 110.51277 * 98.54746 * 4 2 1 35 35 H 1.08998 * 110.61390 * 241.48684 * 5 4 2 36 36 H 1.08999 * 110.49194 * 118.72522 * 5 4 2 37 37 H 1.09000 * 109.47849 * 56.54774 * 8 6 5 38 38 H 1.08998 * 109.47443 * 296.54641 * 8 6 5 39 39 H 1.09009 * 109.46730 * 59.99606 * 9 8 6 40 40 H 1.08998 * 109.46846 * 300.00150 * 9 8 6 41 41 H 0.97000 * 119.99894 * 359.71837 * 12 10 9 42 42 H 1.09000 * 112.94093 * 25.33012 * 13 12 10 43 43 H 1.08994 * 113.76088 * 336.24311 * 14 13 12 44 44 H 1.09006 * 113.76021 * 107.60811 * 14 13 12 45 45 H 1.08996 * 109.47416 * 210.57374 * 16 15 14 46 46 H 1.09000 * 109.47137 * 330.57501 * 16 15 14 47 47 H 0.97005 * 119.99902 * 359.97438 * 19 17 16 48 48 H 0.97001 * 120.00052 * 179.97438 * 23 22 20 49 49 H 1.08999 * 113.76331 * 221.08343 * 28 15 14 50 50 H 1.09008 * 113.76109 * 89.71741 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7740 -1.2239 5 6 3.3206 -1.5048 -0.6862 6 6 3.3873 -1.0871 0.7995 7 1 4.0528 -0.2329 0.9239 8 6 3.8601 -2.2594 1.6615 9 6 4.0012 -1.8000 3.1141 10 6 4.4663 -2.9548 3.9633 11 8 4.6648 -4.0387 3.4567 12 7 4.6556 -2.7846 5.2869 13 6 5.1019 -3.9088 6.1134 14 6 3.9969 -4.4957 7.0099 15 7 5.0324 -4.5657 8.0676 16 6 4.4951 -4.1272 9.3626 17 6 3.9361 -5.3150 10.1028 18 8 3.9805 -6.4182 9.6006 19 7 3.3860 -5.1512 11.3221 20 6 2.8779 -6.2318 11.9958 21 1 2.9182 -7.2143 11.5490 22 6 2.3112 -6.0631 13.2531 23 7 2.2627 -4.8677 13.7969 24 14 1.6184 -7.5354 14.1706 25 1 1.7938 -8.7589 13.3474 26 1 2.3371 -7.6983 15.4598 27 1 0.1729 -7.3194 14.4335 28 6 5.7997 -3.4807 7.4171 29 8 2.0328 -0.7237 1.1443 30 1 -0.3633 0.5006 0.8975 31 1 -0.3633 0.5272 -0.8822 32 1 -0.3633 -1.0275 -0.0154 33 1 1.3276 -1.4919 -1.5773 34 1 2.3430 -0.0838 -2.0216 35 1 4.2142 -1.1750 -1.2162 36 1 3.1998 -2.5845 -0.7744 37 1 4.8246 -2.6128 1.2970 38 1 3.1319 -3.0685 1.6055 39 1 3.0366 -1.4466 3.4787 40 1 4.7294 -0.9909 3.1701 41 1 4.4965 -1.9178 5.6920 42 1 5.6528 -4.6599 5.5473 43 1 3.1913 -3.7952 7.2296 44 1 3.6365 -5.4707 6.6815 45 1 5.2921 -3.6739 9.9520 46 1 3.7036 -3.3959 9.1987 47 1 3.3501 -4.2688 11.7235 48 1 1.8667 -4.7499 14.6745 49 1 6.8771 -3.6459 7.4133 50 1 5.5225 -2.4824 7.7561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481604506.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:04 Heat of formation + Delta-G solvation = -94.192342 kcal Electronic energy + Delta-G solvation = -28503.640140 eV Core-core repulsion = 24338.478962 eV Total energy + Delta-G solvation = -4165.161178 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.54605 -40.01023 -39.02814 -37.64731 -34.27996 -34.13828 -33.76048 -32.63266 -31.27805 -31.08854 -29.68992 -27.05189 -26.07823 -25.39296 -23.93173 -22.95786 -21.73983 -21.20463 -20.56890 -20.01542 -19.21014 -17.87909 -17.28996 -16.93486 -16.52011 -16.45780 -16.09549 -15.48043 -15.41105 -15.10808 -14.66369 -14.48922 -14.27181 -14.14599 -13.76786 -13.66474 -13.40185 -13.17129 -12.86108 -12.83193 -12.61896 -12.59907 -12.19830 -12.08067 -11.99231 -11.59589 -11.52742 -11.46799 -11.28295 -11.19803 -11.15608 -11.05411 -11.03109 -10.64310 -10.31896 -10.19500 -10.12206 -9.97656 -9.48343 -9.16414 -8.74886 -8.16930 -7.93081 -6.39144 -3.79631 2.50042 2.95993 3.18430 3.28719 3.36565 3.39604 3.91702 3.96623 4.15082 4.20010 4.23312 4.46176 4.46964 4.48687 4.53620 4.72108 4.82935 4.86125 4.95800 4.97532 5.00706 5.09894 5.13825 5.19484 5.22332 5.32583 5.36922 5.37836 5.39536 5.43037 5.59039 5.63006 5.64266 5.67959 5.70454 5.72055 5.76588 5.90401 5.94238 6.13065 6.27025 6.38145 6.52521 6.55950 7.12480 7.34223 7.58191 8.08890 8.09486 8.65235 9.21660 9.57628 10.10292 10.78891 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.001596 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.894030 B =17536.008430 C =18379.560345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.069 3.931 3 H 0.067 0.933 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.074 3.926 7 H 0.069 0.931 8 C -0.097 4.097 9 C -0.139 4.139 10 C 0.513 3.487 11 O -0.539 6.539 12 N -0.723 5.723 13 C 0.117 3.883 14 C 0.000 4.000 15 N -0.446 5.446 16 C 0.013 3.987 17 C 0.446 3.554 18 O -0.573 6.573 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.904 5.904 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.008 4.008 29 O -0.367 6.367 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.400 0.600 42 H 0.123 0.877 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.096 0.904 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 17.063 -27.222 32.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 H 0.085 0.915 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.016 3.984 7 H 0.087 0.913 8 C -0.135 4.135 9 C -0.179 4.179 10 C 0.300 3.700 11 O -0.415 6.415 12 N -0.375 5.375 13 C 0.012 3.988 14 C -0.130 4.130 15 N -0.168 5.168 16 C -0.119 4.119 17 C 0.231 3.769 18 O -0.456 6.456 19 N -0.205 5.205 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.546 5.546 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.138 4.138 29 O -0.286 6.286 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.234 0.766 42 H 0.141 0.859 43 H 0.089 0.911 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.076 0.924 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.115 0.885 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.612 14.889 -27.375 31.271 hybrid contribution -0.821 1.284 0.955 1.798 sum 1.791 16.173 -26.420 31.029 Atomic orbital electron populations 1.21808 0.93183 1.03033 1.02454 1.22961 0.95385 0.95303 0.85196 0.91512 1.23042 0.97832 0.99813 0.98294 1.23012 0.98376 1.01916 0.95658 1.23033 0.84772 0.96925 0.93622 0.91325 1.21411 1.02801 0.96868 0.92388 1.21659 1.03649 0.96964 0.95638 1.20782 0.76708 0.90148 0.82359 1.90719 1.50719 1.27301 1.72781 1.46122 1.69184 1.13984 1.08191 1.23042 0.96313 0.89445 0.90007 1.24508 0.94617 1.02319 0.91573 1.68387 1.13889 1.34575 0.99962 1.22464 0.99584 0.97007 0.92876 1.19676 0.84177 0.89776 0.83271 1.90534 1.60871 1.26077 1.68134 1.41874 1.52589 1.10961 1.15099 1.19758 1.34158 0.89975 0.98746 0.87895 1.25246 0.97847 0.97879 0.97053 1.69621 1.45780 1.21559 1.17596 0.85803 0.78292 0.81150 0.79127 1.19219 1.20766 1.20811 1.24410 1.01127 0.95291 0.92958 1.89171 1.26935 1.74425 1.38108 0.91763 0.91258 0.91709 0.90501 0.90701 0.90498 0.90252 0.89787 0.90118 0.88168 0.89037 0.76562 0.85869 0.91147 0.88527 0.89306 0.92443 0.77594 0.92004 0.88546 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.52 37.16 0.35 -0.49 16 2 C 0.07 0.44 3.92 -25.96 -0.10 0.34 16 3 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 4 C -0.15 -0.82 6.64 -25.07 -0.17 -0.98 16 5 C -0.15 -0.89 6.65 -25.07 -0.17 -1.05 16 6 C 0.07 0.51 3.26 -25.96 -0.08 0.43 16 7 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 8 C -0.10 -0.79 4.14 -26.73 -0.11 -0.90 16 9 C -0.14 -1.06 5.63 -27.88 -0.16 -1.22 16 10 C 0.51 5.65 7.83 -10.98 -0.09 5.57 16 11 O -0.54 -8.20 15.60 5.55 0.09 -8.11 16 12 N -0.72 -7.01 5.37 -54.94 -0.30 -7.30 16 13 C 0.12 1.45 4.39 -69.62 -0.31 1.14 16 14 C 0.00 0.00 7.77 -2.63 -0.02 -0.02 16 15 N -0.45 -7.47 5.65 -239.66 -1.35 -8.82 16 16 C 0.01 0.23 5.28 -4.97 -0.03 0.20 16 17 C 0.45 10.84 7.83 -10.99 -0.09 10.75 16 18 O -0.57 -16.24 16.01 5.55 0.09 -16.15 16 19 N -0.57 -14.64 5.29 -10.96 -0.06 -14.70 16 20 C -0.30 -8.44 9.68 -14.94 -0.14 -8.58 16 21 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 24 Si 0.93 21.39 29.55 -169.99 -5.02 16.36 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 C -0.01 -0.09 7.70 -2.76 -0.02 -0.12 16 29 O -0.37 -3.21 10.75 -35.23 -0.38 -3.59 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 33 H 0.08 0.41 7.86 -51.93 -0.41 0.01 16 34 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.50 7.87 -51.93 -0.41 0.09 16 37 H 0.08 0.68 8.10 -51.93 -0.42 0.25 16 38 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.10 0.75 7.96 -51.92 -0.41 0.34 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.40 2.70 8.71 -40.82 -0.36 2.34 16 42 H 0.12 1.74 7.51 -51.93 -0.39 1.35 16 43 H 0.07 1.00 7.49 -51.93 -0.39 0.61 16 44 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 45 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 46 H 0.06 0.90 7.39 -51.93 -0.38 0.52 16 47 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.07 0.67 7.89 -51.92 -0.41 0.26 16 LS Contribution 410.04 15.07 6.18 6.18 Total: -1.00 -35.43 410.04 -9.73 -45.16 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.48 Total: 9.52 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -1.22 Total: 5.55 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.98 Total: -54.92 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.20 Total: -27.85 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.43 -9.73 -45.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481604506.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.031 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds