Wall clock time and date at job start Tue Mar 31 2020 23:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.41743 * 2 1 4 4 C 1.54473 * 110.37050 * 237.69140 * 2 1 3 5 5 C 1.54686 * 104.07738 * 217.09891 * 4 2 1 6 6 C 1.54482 * 103.97849 * 0.13697 * 5 4 2 7 7 H 1.08998 * 110.36627 * 264.96256 * 6 5 4 8 8 C 1.52997 * 110.36895 * 142.73950 * 6 5 4 9 9 C 1.53004 * 109.47000 * 176.54857 * 8 6 5 10 10 C 1.50700 * 109.47208 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99803 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99675 * 180.27843 * 10 9 8 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 9 14 14 C 1.53931 * 113.73267 * 253.76054 * 13 12 10 15 15 N 1.48189 * 86.10534 * 221.95785 * 14 13 12 16 16 C 1.46900 * 111.07295 * 137.51898 * 15 14 13 17 17 C 1.50703 * 109.46955 * 90.57073 * 16 15 14 18 18 O 1.21292 * 119.99905 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99994 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00379 * 180.02562 * 19 17 16 21 21 H 1.08007 * 119.99384 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00464 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99848 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00254 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46875 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47204 * 119.99961 * 24 22 20 27 27 H 1.48499 * 109.47187 * 240.00216 * 24 22 20 28 28 C 1.47962 * 90.79643 * 24.59996 * 15 14 13 29 29 O 1.44418 * 104.89983 * 23.85238 * 6 5 4 30 30 H 1.08997 * 109.47018 * 299.14983 * 1 2 3 31 31 H 1.09007 * 109.46821 * 59.14023 * 1 2 3 32 32 H 1.08992 * 109.47333 * 179.14028 * 1 2 3 33 33 H 1.09002 * 110.51817 * 335.83547 * 4 2 1 34 34 H 1.09007 * 110.51277 * 98.54746 * 4 2 1 35 35 H 1.08998 * 110.61390 * 241.48684 * 5 4 2 36 36 H 1.08999 * 110.49194 * 118.72522 * 5 4 2 37 37 H 1.09000 * 109.47849 * 56.54774 * 8 6 5 38 38 H 1.08998 * 109.47443 * 296.54641 * 8 6 5 39 39 H 1.09009 * 109.46730 * 59.99606 * 9 8 6 40 40 H 1.08998 * 109.46846 * 300.00150 * 9 8 6 41 41 H 0.97000 * 119.99894 * 359.71837 * 12 10 9 42 42 H 1.09000 * 112.94093 * 25.33012 * 13 12 10 43 43 H 1.08994 * 113.76088 * 336.24311 * 14 13 12 44 44 H 1.09006 * 113.76021 * 107.60811 * 14 13 12 45 45 H 1.08996 * 109.47416 * 210.57374 * 16 15 14 46 46 H 1.09000 * 109.47137 * 330.57501 * 16 15 14 47 47 H 0.97005 * 119.99902 * 359.97438 * 19 17 16 48 48 H 0.97001 * 120.00052 * 179.97438 * 23 22 20 49 49 H 1.08999 * 113.76331 * 221.08343 * 28 15 14 50 50 H 1.09008 * 113.76109 * 89.71741 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7740 -1.2239 5 6 3.3206 -1.5048 -0.6862 6 6 3.3873 -1.0871 0.7995 7 1 4.0528 -0.2329 0.9239 8 6 3.8601 -2.2594 1.6615 9 6 4.0012 -1.8000 3.1141 10 6 4.4663 -2.9548 3.9633 11 8 4.6648 -4.0387 3.4567 12 7 4.6556 -2.7846 5.2869 13 6 5.1019 -3.9088 6.1134 14 6 3.9969 -4.4957 7.0099 15 7 5.0324 -4.5657 8.0676 16 6 4.4951 -4.1272 9.3626 17 6 3.9361 -5.3150 10.1028 18 8 3.9805 -6.4182 9.6006 19 7 3.3860 -5.1512 11.3221 20 6 2.8779 -6.2318 11.9958 21 1 2.9182 -7.2143 11.5490 22 6 2.3112 -6.0631 13.2531 23 7 2.2627 -4.8677 13.7969 24 14 1.6184 -7.5354 14.1706 25 1 1.7938 -8.7589 13.3474 26 1 2.3371 -7.6983 15.4598 27 1 0.1729 -7.3194 14.4335 28 6 5.7997 -3.4807 7.4171 29 8 2.0328 -0.7237 1.1443 30 1 -0.3633 0.5006 0.8975 31 1 -0.3633 0.5272 -0.8822 32 1 -0.3633 -1.0275 -0.0154 33 1 1.3276 -1.4919 -1.5773 34 1 2.3430 -0.0838 -2.0216 35 1 4.2142 -1.1750 -1.2162 36 1 3.1998 -2.5845 -0.7744 37 1 4.8246 -2.6128 1.2970 38 1 3.1319 -3.0685 1.6055 39 1 3.0366 -1.4466 3.4787 40 1 4.7294 -0.9909 3.1701 41 1 4.4965 -1.9178 5.6920 42 1 5.6528 -4.6599 5.5473 43 1 3.1913 -3.7952 7.2296 44 1 3.6365 -5.4707 6.6815 45 1 5.2921 -3.6739 9.9520 46 1 3.7036 -3.3959 9.1987 47 1 3.3501 -4.2688 11.7235 48 1 1.8667 -4.7499 14.6745 49 1 6.8771 -3.6459 7.4133 50 1 5.5225 -2.4824 7.7561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481604506.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:03 Heat of formation + Delta-G solvation = -122.583283 kcal Electronic energy + Delta-G solvation = -28504.871263 eV Core-core repulsion = 24338.478962 eV Total energy + Delta-G solvation = -4166.392301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59998 -40.65973 -40.15103 -39.36710 -35.97285 -35.04309 -34.88094 -33.29351 -33.13099 -31.78787 -30.91581 -27.86226 -27.18536 -26.99268 -25.14918 -23.81272 -22.29317 -21.70577 -21.47569 -21.16642 -20.88235 -19.91037 -18.10633 -17.92144 -17.61444 -17.36016 -17.05515 -16.58630 -16.54876 -16.33522 -15.90668 -15.79121 -15.64850 -15.16613 -14.88079 -14.64765 -14.38132 -14.12203 -13.99490 -13.72968 -13.67081 -13.52251 -13.36813 -13.06392 -13.01737 -12.73036 -12.61549 -12.50853 -12.44659 -12.36439 -12.13577 -12.04962 -11.89200 -11.76419 -11.64240 -11.51554 -11.48763 -10.92256 -10.63685 -10.39391 -10.11878 -10.01374 -9.69835 -8.47769 -5.96264 1.35345 1.40415 1.54642 1.62620 2.05132 2.08967 2.29341 2.80509 2.91142 3.18443 3.29329 3.53954 3.61158 3.71798 3.79594 3.85376 3.98503 4.05469 4.09994 4.17774 4.27649 4.28875 4.35006 4.39411 4.45109 4.51205 4.52687 4.58169 4.67062 4.70462 4.74863 4.78443 4.84512 4.96160 4.97763 4.99400 5.11969 5.18738 5.21109 5.27377 5.32534 5.34930 5.40168 5.46600 5.85919 6.04023 6.06125 6.56044 6.60589 7.12947 7.27501 7.56217 8.13608 8.69841 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.001596 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.894030 B =17536.008430 C =18379.560345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 H 0.080 0.920 4 C -0.150 4.150 5 C -0.154 4.154 6 C 0.075 3.925 7 H 0.089 0.911 8 C -0.095 4.095 9 C -0.128 4.128 10 C 0.510 3.490 11 O -0.588 6.588 12 N -0.707 5.707 13 C 0.131 3.869 14 C -0.006 4.006 15 N -0.485 5.485 16 C 0.028 3.972 17 C 0.439 3.561 18 O -0.622 6.622 19 N -0.575 5.575 20 C -0.335 4.335 21 H 0.074 0.926 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.277 1.277 26 H -0.269 1.269 27 H -0.270 1.270 28 C 0.011 3.989 29 O -0.392 6.392 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.419 0.581 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.115 0.885 46 H 0.086 0.914 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.109 0.891 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.782 20.106 -27.406 34.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.005 3.995 3 H 0.098 0.902 4 C -0.187 4.187 5 C -0.192 4.192 6 C 0.018 3.982 7 H 0.107 0.893 8 C -0.133 4.133 9 C -0.168 4.168 10 C 0.298 3.702 11 O -0.468 6.468 12 N -0.360 5.360 13 C 0.024 3.976 14 C -0.136 4.136 15 N -0.208 5.208 16 C -0.104 4.104 17 C 0.226 3.774 18 O -0.508 6.508 19 N -0.213 5.213 20 C -0.464 4.464 21 H 0.092 0.908 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.202 1.202 26 H -0.194 1.194 27 H -0.195 1.195 28 C -0.118 4.118 29 O -0.313 6.313 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.257 0.743 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.133 0.867 46 H 0.104 0.896 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.127 0.873 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.079 18.011 -27.542 33.051 hybrid contribution -0.970 0.329 0.974 1.413 sum 2.109 18.340 -26.568 32.352 Atomic orbital electron populations 1.21828 0.93062 1.02463 1.03092 1.23150 0.95629 0.95822 0.84902 0.90236 1.23046 0.97377 0.99919 0.98400 1.23041 0.99443 1.01307 0.95382 1.23086 0.84495 0.96873 0.93727 0.89341 1.21361 1.01910 0.96738 0.93326 1.21658 1.04659 0.96149 0.94285 1.21440 0.75656 0.90337 0.82742 1.90708 1.52868 1.29459 1.73721 1.45940 1.68340 1.14056 1.07648 1.22621 0.94845 0.89830 0.90275 1.24508 0.95669 1.01022 0.92427 1.68302 1.14918 1.37759 0.99811 1.22348 1.00972 0.94041 0.93054 1.20912 0.82606 0.91231 0.82661 1.90501 1.62392 1.28817 1.69107 1.41931 1.52995 1.10555 1.15776 1.19673 1.36700 0.89927 1.00117 0.90752 1.25998 0.97355 1.00674 0.97091 1.69668 1.45522 1.22758 1.18056 0.84892 0.78181 0.77499 0.77875 1.20150 1.19398 1.19477 1.24460 1.01140 0.95528 0.90659 1.89142 1.27839 1.74924 1.39363 0.92292 0.89416 0.92911 0.91018 0.88852 0.88794 0.91518 0.89940 0.93033 0.87561 0.85655 0.74283 0.88111 0.89768 0.92297 0.86682 0.89647 0.76898 0.91273 0.87320 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.52 71.98 0.69 -0.86 16 2 C 0.06 0.71 3.92 31.10 0.12 0.83 16 3 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 4 C -0.15 -1.39 6.64 31.67 0.21 -1.18 16 5 C -0.15 -1.62 6.65 31.67 0.21 -1.41 16 6 C 0.08 0.93 3.26 31.10 0.10 1.04 16 7 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 8 C -0.10 -1.51 4.14 30.59 0.13 -1.38 16 9 C -0.13 -1.72 5.63 29.85 0.17 -1.55 16 10 C 0.51 10.78 7.83 87.66 0.69 11.46 16 11 O -0.59 -18.39 15.60 -3.04 -0.05 -18.43 16 12 N -0.71 -12.28 5.37 -446.12 -2.40 -14.67 16 13 C 0.13 3.11 4.39 46.56 0.20 3.32 16 14 C -0.01 -0.19 7.77 86.36 0.67 0.48 16 15 N -0.48 -15.79 5.65 -912.14 -5.15 -20.94 16 16 C 0.03 0.93 5.28 85.56 0.45 1.38 16 17 C 0.44 21.60 7.83 87.66 0.69 22.28 16 18 O -0.62 -36.66 16.01 -3.07 -0.05 -36.71 16 19 N -0.57 -30.05 5.29 -306.99 -1.62 -31.67 16 20 C -0.33 -19.51 9.68 84.04 0.81 -18.70 16 21 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 23 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 24 Si 0.99 43.79 29.55 68.60 2.03 45.81 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 28 C 0.01 0.22 7.70 86.41 0.67 0.89 16 29 O -0.39 -6.44 10.75 -148.98 -1.60 -8.05 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.05 0.67 8.12 -2.39 -0.02 0.65 16 33 H 0.07 0.73 7.86 -2.39 -0.02 0.71 16 34 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.86 7.87 -2.39 -0.02 0.84 16 37 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 38 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 39 H 0.11 1.37 7.96 -2.38 -0.02 1.35 16 40 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.42 4.13 8.71 -92.71 -0.81 3.32 16 42 H 0.10 2.92 7.51 -2.39 -0.02 2.90 16 43 H 0.08 2.29 7.49 -2.39 -0.02 2.28 16 44 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.12 3.30 8.08 -2.39 -0.02 3.28 16 46 H 0.09 2.42 7.39 -2.39 -0.02 2.40 16 47 H 0.40 19.37 7.90 -92.70 -0.73 18.64 16 48 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 49 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.11 1.47 7.89 -2.38 -0.02 1.46 16 Total: -1.00 -80.96 410.04 -2.88 -83.84 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -0.59 Total: 33.88 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 6.27 Total: 16.45 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -8.89 Total: -116.80 kcal Atomic # 8 Polarization: -61.49 SS G_CDS: -1.70 Total: -63.19 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -80.96 -2.88 -83.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481604506.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.747 kcal (2) G-P(sol) polarization free energy of solvation -80.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds