Wall clock time and date at job start Tue Mar 31 2020 23:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.27274 * 2 1 4 4 C 1.54947 * 110.30874 * 122.19316 * 2 1 3 5 5 C 1.55307 * 100.94272 * 155.36267 * 4 2 1 6 6 C 1.54390 * 102.25162 * 325.86753 * 5 4 2 7 7 H 1.09000 * 109.82918 * 261.84296 * 6 5 4 8 8 C 1.52994 * 109.83034 * 140.86954 * 6 5 4 9 9 C 1.52996 * 109.47056 * 175.41436 * 8 6 5 10 10 C 1.50704 * 109.47185 * 179.97438 * 9 8 6 11 11 O 1.21284 * 119.99881 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00045 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99679 * 179.97438 * 12 10 9 14 14 C 1.53937 * 113.73480 * 251.72749 * 13 12 10 15 15 N 1.47964 * 86.18049 * 221.92640 * 14 13 12 16 16 C 1.46893 * 110.99902 * 137.58757 * 15 14 13 17 17 C 1.50702 * 109.47429 * 70.63492 * 16 15 14 18 18 O 1.21291 * 120.00082 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99826 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99733 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99774 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99719 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00202 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47377 * 60.00118 * 24 22 20 26 26 H 1.48508 * 109.47026 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47144 * 299.99531 * 24 22 20 28 28 C 1.47957 * 90.76397 * 24.69106 * 15 14 13 29 29 O 1.43244 * 107.58641 * 21.35598 * 6 5 4 30 30 H 1.09002 * 109.47153 * 180.63696 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.63886 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.63868 * 1 2 3 33 33 H 1.09000 * 111.12910 * 273.27566 * 4 2 1 34 34 H 1.09002 * 111.12472 * 37.44413 * 4 2 1 35 35 H 1.09003 * 110.84897 * 207.68146 * 5 4 2 36 36 H 1.09002 * 111.02648 * 84.13662 * 5 4 2 37 37 H 1.08998 * 109.47286 * 295.41560 * 8 6 5 38 38 H 1.09003 * 109.47375 * 55.41067 * 8 6 5 39 39 H 1.09000 * 109.47358 * 299.99693 * 9 8 6 40 40 H 1.08998 * 109.47528 * 60.00307 * 9 8 6 41 41 H 0.96999 * 120.00112 * 0.02562 * 12 10 9 42 42 H 1.08998 * 112.94433 * 23.44019 * 13 12 10 43 43 H 1.08995 * 113.75570 * 336.24406 * 14 13 12 44 44 H 1.09003 * 113.75771 * 107.60573 * 14 13 12 45 45 H 1.08999 * 109.47069 * 190.63963 * 16 15 14 46 46 H 1.09003 * 109.46831 * 310.63560 * 16 15 14 47 47 H 0.97002 * 120.00110 * 0.02562 * 19 17 16 48 48 H 0.97007 * 119.99868 * 180.02562 * 23 22 20 49 49 H 1.09001 * 113.75981 * 220.99374 * 28 15 14 50 50 H 1.08992 * 113.76018 * 89.62543 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7742 1.2297 5 6 3.4699 -1.2031 0.7180 6 6 3.2113 -1.4412 -0.7854 7 1 3.0625 -2.5049 -0.9711 8 6 4.3991 -0.9310 -1.6036 9 6 4.1863 -1.2732 -3.0795 10 6 5.3561 -0.7701 -3.8856 11 8 6.2702 -0.1949 -3.3337 12 7 5.3869 -0.9602 -5.2196 13 6 6.5238 -0.4706 -6.0031 14 6 6.1907 0.7471 -6.8840 15 7 6.9978 0.0848 -7.9324 16 6 6.3453 0.1901 -9.2442 17 6 6.4133 1.6164 -9.7262 18 8 6.9527 2.4620 -9.0441 19 7 5.8755 1.9522 -10.9155 20 6 5.9369 3.2499 -11.3537 21 1 6.4165 4.0028 -10.7460 22 6 5.3820 3.5961 -12.5796 23 7 4.7980 2.6800 -13.3188 24 14 5.4663 5.3640 -13.1769 25 1 6.8872 5.7791 -13.2962 26 1 4.8071 5.4703 -14.5034 27 1 4.7721 6.2480 -12.2064 28 6 6.7454 -1.2378 -7.3192 29 8 2.0286 -0.7157 -1.1413 30 1 -0.3633 -1.0276 0.0114 31 1 -0.3633 0.5039 -0.8957 32 1 -0.3634 0.5237 0.8842 33 1 2.1497 -0.1223 2.0994 34 1 1.4470 -1.6429 1.4493 35 1 3.7966 -2.1217 1.2055 36 1 4.2001 -0.4073 0.8646 37 1 4.4815 0.1499 -1.4894 38 1 5.3147 -1.4045 -1.2491 39 1 4.1041 -2.3541 -3.1937 40 1 3.2709 -0.7996 -3.4340 41 1 4.6560 -1.4206 -5.6609 42 1 7.4291 -0.3494 -5.4083 43 1 5.1329 0.8328 -7.1327 44 1 6.6210 1.6812 -6.5229 45 1 6.8547 -0.4588 -9.9566 46 1 5.3023 -0.1145 -9.1567 47 1 5.4444 1.2759 -11.4612 48 1 4.4109 2.9217 -14.1748 49 1 7.6189 -1.8896 -7.3058 50 1 5.8499 -1.7325 -7.6952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481604507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:07 Heat of formation + Delta-G solvation = -95.626586 kcal Electronic energy + Delta-G solvation = -28699.844237 eV Core-core repulsion = 24534.620866 eV Total energy + Delta-G solvation = -4165.223371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.53410 -40.04401 -39.02309 -37.62688 -34.21506 -34.11420 -33.75420 -32.65126 -31.30212 -31.07852 -29.66825 -27.00495 -25.99153 -25.39674 -23.95823 -22.93132 -21.94756 -20.94105 -20.44508 -19.94314 -19.19628 -17.89464 -17.44632 -17.21812 -16.51974 -16.21447 -16.12740 -15.52584 -15.29442 -14.70628 -14.63040 -14.41362 -14.19619 -14.11832 -13.82884 -13.76221 -13.38257 -13.20492 -12.82838 -12.71439 -12.69287 -12.50031 -12.13117 -12.09347 -12.04388 -11.72136 -11.52434 -11.43051 -11.26126 -11.21684 -11.17991 -11.07516 -11.03709 -10.56955 -10.43231 -10.20687 -9.94195 -9.82574 -9.49282 -9.09727 -8.69368 -8.24192 -7.95988 -6.41331 -3.82087 2.55105 3.01523 3.20802 3.26221 3.31059 3.37480 3.89371 4.02510 4.07469 4.20760 4.30601 4.32432 4.52374 4.57861 4.70962 4.71233 4.88249 4.90856 4.94264 4.99474 5.03809 5.14876 5.21293 5.22072 5.26767 5.31096 5.32715 5.42167 5.45756 5.47665 5.56069 5.66239 5.67531 5.68405 5.77329 5.79591 5.86267 5.97439 6.00638 6.20827 6.28937 6.42426 6.60952 6.73350 7.15199 7.39503 7.55529 8.05863 8.14090 8.61771 9.18349 9.54146 10.06145 10.76347 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.001739 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.498772 B =16100.747772 C =17303.621589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.070 0.930 4 C -0.152 4.152 5 C -0.153 4.153 6 C 0.080 3.920 7 H 0.080 0.920 8 C -0.112 4.112 9 C -0.137 4.137 10 C 0.513 3.487 11 O -0.541 6.541 12 N -0.723 5.723 13 C 0.114 3.886 14 C 0.010 3.990 15 N -0.450 5.450 16 C 0.013 3.987 17 C 0.443 3.557 18 O -0.577 6.577 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.009 4.009 29 O -0.374 6.374 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.400 0.600 42 H 0.123 0.877 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.054 0.946 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.095 0.905 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.222 -14.638 25.248 30.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.017 3.983 3 H 0.088 0.912 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.023 3.977 7 H 0.098 0.902 8 C -0.150 4.150 9 C -0.177 4.177 10 C 0.300 3.700 11 O -0.417 6.417 12 N -0.374 5.374 13 C 0.008 3.992 14 C -0.120 4.120 15 N -0.172 5.172 16 C -0.119 4.119 17 C 0.228 3.772 18 O -0.461 6.461 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.139 4.139 29 O -0.294 6.294 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.234 0.766 42 H 0.141 0.859 43 H 0.087 0.913 44 H 0.117 0.883 45 H 0.110 0.890 46 H 0.072 0.928 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.114 0.886 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.704 -13.400 25.558 29.626 hybrid contribution -1.427 -0.065 -0.975 1.729 sum -8.131 -13.465 24.584 29.185 Atomic orbital electron populations 1.21887 0.93746 1.02714 1.02509 1.22962 0.94816 0.95711 0.84841 0.91203 1.23319 0.96261 1.00879 0.98541 1.23172 0.97797 1.02923 0.95119 1.22779 0.85428 0.96035 0.93505 0.90223 1.21730 0.97318 1.03008 0.92988 1.21630 0.97632 1.02638 0.95823 1.20818 0.88054 0.78826 0.82315 1.90709 1.38471 1.41806 1.70736 1.46118 1.23716 1.59970 1.07620 1.23117 0.90756 0.94491 0.90797 1.24299 0.97300 0.99145 0.91220 1.68375 1.44113 1.04485 1.00261 1.22448 0.97773 0.98180 0.93487 1.19676 0.84773 0.89092 0.83687 1.90534 1.47833 1.50955 1.56772 1.41855 1.50789 1.10650 1.16809 1.19654 1.34966 0.85804 1.02445 0.87982 1.25255 0.96678 0.99868 0.96129 1.69604 1.37940 1.33754 1.13096 0.85914 0.78654 0.81952 0.77681 1.19875 1.20973 1.19920 1.24433 1.01602 0.94445 0.93406 1.88448 1.42018 1.64763 1.34144 0.92010 0.91738 0.91336 0.90002 0.90342 0.90008 0.90103 0.90581 0.90205 0.89081 0.88171 0.76579 0.85893 0.91335 0.88311 0.89008 0.92841 0.77517 0.91841 0.88650 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.62 37.16 0.36 -0.54 16 2 C 0.07 0.52 4.07 -25.70 -0.10 0.42 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.15 -0.81 6.57 -24.48 -0.16 -0.97 16 5 C -0.15 -0.87 6.55 -24.78 -0.16 -1.04 16 6 C 0.08 0.58 3.52 -26.01 -0.09 0.49 16 7 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 8 C -0.11 -0.96 4.07 -26.74 -0.11 -1.07 16 9 C -0.14 -1.14 5.61 -27.88 -0.16 -1.29 16 10 C 0.51 5.98 7.83 -10.98 -0.09 5.90 16 11 O -0.54 -8.53 15.58 5.55 0.09 -8.44 16 12 N -0.72 -7.53 5.36 -54.93 -0.29 -7.83 16 13 C 0.11 1.47 4.43 -69.62 -0.31 1.17 16 14 C 0.01 0.17 6.56 -2.76 -0.02 0.15 16 15 N -0.45 -7.58 5.95 -239.88 -1.43 -9.01 16 16 C 0.01 0.24 5.31 -4.98 -0.03 0.21 16 17 C 0.44 10.64 7.59 -10.98 -0.08 10.56 16 18 O -0.58 -16.02 15.13 5.55 0.08 -15.94 16 19 N -0.56 -14.46 5.29 -10.96 -0.06 -14.51 16 20 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 24 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 C -0.01 -0.11 7.73 -2.76 -0.02 -0.13 16 29 O -0.37 -3.37 10.32 -35.23 -0.36 -3.73 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.38 8.06 -51.93 -0.42 -0.04 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.48 7.85 -51.93 -0.41 0.08 16 37 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.83 7.88 -51.93 -0.41 0.42 16 41 H 0.40 3.03 8.73 -40.82 -0.36 2.67 16 42 H 0.12 1.79 7.46 -51.93 -0.39 1.40 16 43 H 0.07 1.10 7.78 -51.93 -0.40 0.69 16 44 H 0.10 1.88 8.09 -51.93 -0.42 1.46 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.05 0.84 7.69 -51.93 -0.40 0.44 16 47 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.07 0.70 7.77 -51.93 -0.40 0.30 16 LS Contribution 408.47 15.07 6.16 6.16 Total: -1.00 -34.69 408.47 -9.83 -44.52 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -8.51 Total: 10.68 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -1.21 Total: 5.76 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -1.05 Total: -55.28 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.19 Total: -28.11 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.69 -9.83 -44.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481604507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.106 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds