Wall clock time and date at job start Tue Mar 31 2020 23:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.27274 * 2 1 4 4 C 1.54947 * 110.30874 * 122.19316 * 2 1 3 5 5 C 1.55307 * 100.94272 * 155.36267 * 4 2 1 6 6 C 1.54390 * 102.25162 * 325.86753 * 5 4 2 7 7 H 1.09000 * 109.82918 * 261.84296 * 6 5 4 8 8 C 1.52994 * 109.83034 * 140.86954 * 6 5 4 9 9 C 1.52996 * 109.47056 * 175.41436 * 8 6 5 10 10 C 1.50704 * 109.47185 * 179.97438 * 9 8 6 11 11 O 1.21284 * 119.99881 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00045 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99679 * 179.97438 * 12 10 9 14 14 C 1.53937 * 113.73480 * 251.72749 * 13 12 10 15 15 N 1.47964 * 86.18049 * 221.92640 * 14 13 12 16 16 C 1.46893 * 110.99902 * 137.58757 * 15 14 13 17 17 C 1.50702 * 109.47429 * 70.63492 * 16 15 14 18 18 O 1.21291 * 120.00082 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99826 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99733 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99774 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99719 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00202 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47377 * 60.00118 * 24 22 20 26 26 H 1.48508 * 109.47026 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47144 * 299.99531 * 24 22 20 28 28 C 1.47957 * 90.76397 * 24.69106 * 15 14 13 29 29 O 1.43244 * 107.58641 * 21.35598 * 6 5 4 30 30 H 1.09002 * 109.47153 * 180.63696 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.63886 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.63868 * 1 2 3 33 33 H 1.09000 * 111.12910 * 273.27566 * 4 2 1 34 34 H 1.09002 * 111.12472 * 37.44413 * 4 2 1 35 35 H 1.09003 * 110.84897 * 207.68146 * 5 4 2 36 36 H 1.09002 * 111.02648 * 84.13662 * 5 4 2 37 37 H 1.08998 * 109.47286 * 295.41560 * 8 6 5 38 38 H 1.09003 * 109.47375 * 55.41067 * 8 6 5 39 39 H 1.09000 * 109.47358 * 299.99693 * 9 8 6 40 40 H 1.08998 * 109.47528 * 60.00307 * 9 8 6 41 41 H 0.96999 * 120.00112 * 0.02562 * 12 10 9 42 42 H 1.08998 * 112.94433 * 23.44019 * 13 12 10 43 43 H 1.08995 * 113.75570 * 336.24406 * 14 13 12 44 44 H 1.09003 * 113.75771 * 107.60573 * 14 13 12 45 45 H 1.08999 * 109.47069 * 190.63963 * 16 15 14 46 46 H 1.09003 * 109.46831 * 310.63560 * 16 15 14 47 47 H 0.97002 * 120.00110 * 0.02562 * 19 17 16 48 48 H 0.97007 * 119.99868 * 180.02562 * 23 22 20 49 49 H 1.09001 * 113.75981 * 220.99374 * 28 15 14 50 50 H 1.08992 * 113.76018 * 89.62543 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7742 1.2297 5 6 3.4699 -1.2031 0.7180 6 6 3.2113 -1.4412 -0.7854 7 1 3.0625 -2.5049 -0.9711 8 6 4.3991 -0.9310 -1.6036 9 6 4.1863 -1.2732 -3.0795 10 6 5.3561 -0.7701 -3.8856 11 8 6.2702 -0.1949 -3.3337 12 7 5.3869 -0.9602 -5.2196 13 6 6.5238 -0.4706 -6.0031 14 6 6.1907 0.7471 -6.8840 15 7 6.9978 0.0848 -7.9324 16 6 6.3453 0.1901 -9.2442 17 6 6.4133 1.6164 -9.7262 18 8 6.9527 2.4620 -9.0441 19 7 5.8755 1.9522 -10.9155 20 6 5.9369 3.2499 -11.3537 21 1 6.4165 4.0028 -10.7460 22 6 5.3820 3.5961 -12.5796 23 7 4.7980 2.6800 -13.3188 24 14 5.4663 5.3640 -13.1769 25 1 6.8872 5.7791 -13.2962 26 1 4.8071 5.4703 -14.5034 27 1 4.7721 6.2480 -12.2064 28 6 6.7454 -1.2378 -7.3192 29 8 2.0286 -0.7157 -1.1413 30 1 -0.3633 -1.0276 0.0114 31 1 -0.3633 0.5039 -0.8957 32 1 -0.3634 0.5237 0.8842 33 1 2.1497 -0.1223 2.0994 34 1 1.4470 -1.6429 1.4493 35 1 3.7966 -2.1217 1.2055 36 1 4.2001 -0.4073 0.8646 37 1 4.4815 0.1499 -1.4894 38 1 5.3147 -1.4045 -1.2491 39 1 4.1041 -2.3541 -3.1937 40 1 3.2709 -0.7996 -3.4340 41 1 4.6560 -1.4206 -5.6609 42 1 7.4291 -0.3494 -5.4083 43 1 5.1329 0.8328 -7.1327 44 1 6.6210 1.6812 -6.5229 45 1 6.8547 -0.4588 -9.9566 46 1 5.3023 -0.1145 -9.1567 47 1 5.4444 1.2759 -11.4612 48 1 4.4109 2.9217 -14.1748 49 1 7.6189 -1.8896 -7.3058 50 1 5.8499 -1.7325 -7.6952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481604507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:06 Heat of formation + Delta-G solvation = -123.439901 kcal Electronic energy + Delta-G solvation = -28701.050313 eV Core-core repulsion = 24534.620866 eV Total energy + Delta-G solvation = -4166.429447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64911 -40.73638 -40.18767 -39.33004 -35.99554 -35.03821 -34.84472 -33.31711 -33.17163 -31.80341 -30.92091 -27.84690 -27.17097 -26.98391 -25.17405 -23.86245 -22.44642 -21.68786 -21.37171 -21.09806 -20.80547 -19.91207 -18.14906 -17.95220 -17.91593 -17.61053 -16.86909 -16.62217 -16.54733 -16.39896 -15.83067 -15.67688 -15.30020 -15.11257 -14.97296 -14.67636 -14.50579 -14.17269 -13.86061 -13.70619 -13.56262 -13.51667 -13.28144 -13.21444 -13.14381 -12.87377 -12.65348 -12.59711 -12.46798 -12.37156 -12.14615 -12.01842 -11.86694 -11.75070 -11.67739 -11.60417 -11.51959 -10.93064 -10.42010 -10.36771 -10.12594 -10.03519 -9.75105 -8.48587 -5.97306 1.37763 1.39764 1.50577 1.61595 2.02738 2.09399 2.28375 2.83963 2.86577 3.17476 3.21562 3.54883 3.59788 3.67792 3.80545 3.83932 3.90476 4.09787 4.15059 4.19381 4.26352 4.30223 4.36427 4.40839 4.42306 4.50228 4.52993 4.60745 4.69088 4.74754 4.79123 4.81381 4.83664 4.92626 4.97837 4.99828 5.06661 5.15043 5.25105 5.31746 5.32418 5.37499 5.38856 5.46177 5.84872 6.03880 6.19158 6.54792 6.58486 7.10843 7.26123 7.53689 8.10346 8.68437 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.001739 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.498772 B =16100.747772 C =17303.621589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.063 3.937 3 H 0.059 0.941 4 C -0.146 4.146 5 C -0.153 4.153 6 C 0.080 3.920 7 H 0.097 0.903 8 C -0.110 4.110 9 C -0.127 4.127 10 C 0.509 3.491 11 O -0.588 6.588 12 N -0.708 5.708 13 C 0.128 3.872 14 C 0.004 3.996 15 N -0.481 5.481 16 C 0.027 3.973 17 C 0.436 3.564 18 O -0.622 6.622 19 N -0.572 5.572 20 C -0.336 4.336 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.268 1.268 27 H -0.273 1.273 28 C 0.011 3.989 29 O -0.395 6.395 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.418 0.582 42 H 0.104 0.896 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.115 0.885 46 H 0.084 0.916 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.114 0.886 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.647 -17.066 25.435 32.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.006 3.994 3 H 0.077 0.923 4 C -0.183 4.183 5 C -0.190 4.190 6 C 0.023 3.977 7 H 0.115 0.885 8 C -0.148 4.148 9 C -0.167 4.167 10 C 0.298 3.702 11 O -0.468 6.468 12 N -0.361 5.361 13 C 0.021 3.979 14 C -0.126 4.126 15 N -0.205 5.205 16 C -0.105 4.105 17 C 0.224 3.776 18 O -0.508 6.508 19 N -0.209 5.209 20 C -0.465 4.465 21 H 0.093 0.907 22 C -0.211 4.211 23 N -0.558 5.558 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.192 1.192 27 H -0.198 1.198 28 C -0.118 4.118 29 O -0.315 6.315 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.142 0.858 40 H 0.122 0.878 41 H 0.256 0.744 42 H 0.122 0.878 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.133 0.867 46 H 0.102 0.898 47 H 0.231 0.769 48 H 0.088 0.912 49 H 0.132 0.868 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.170 -15.881 25.722 31.314 hybrid contribution -0.964 0.702 -1.001 1.557 sum -9.134 -15.179 24.721 30.414 Atomic orbital electron populations 1.21875 0.92939 1.02965 1.02734 1.23115 0.95535 0.95413 0.85334 0.92262 1.23305 0.95843 1.01144 0.98010 1.23194 0.97958 1.03527 0.94350 1.22852 0.84294 0.96511 0.94068 0.88537 1.21692 0.98169 1.01278 0.93684 1.21639 0.95755 1.04495 0.94778 1.21479 0.88267 0.77850 0.82618 1.90696 1.40485 1.43936 1.71673 1.45961 1.23522 1.59362 1.07229 1.22721 0.90753 0.93226 0.91156 1.24230 0.96984 0.98794 0.92627 1.68335 1.44655 1.07631 0.99840 1.22355 1.00103 0.93591 0.94438 1.20839 0.82748 0.91510 0.82518 1.90508 1.49316 1.53223 1.57787 1.41912 1.51416 1.10005 1.17615 1.19596 1.36779 0.86807 1.03362 0.90662 1.26007 0.95705 1.03772 0.95610 1.69655 1.37644 1.35214 1.13336 0.85014 0.78598 0.77193 0.77674 1.19881 1.19194 1.19830 1.24484 1.03919 0.92427 0.90934 1.88419 1.42577 1.65122 1.35422 0.91710 0.92836 0.89790 0.88891 0.89365 0.88282 0.90915 0.93355 0.90339 0.85759 0.87789 0.74407 0.87844 0.91035 0.92572 0.86719 0.89822 0.76872 0.91222 0.86784 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.62 71.98 0.69 -0.92 16 2 C 0.06 0.85 4.07 31.26 0.13 0.98 16 3 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 4 C -0.15 -1.31 6.57 32.05 0.21 -1.10 16 5 C -0.15 -1.55 6.55 31.86 0.21 -1.34 16 6 C 0.08 1.04 3.52 31.06 0.11 1.15 16 7 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 8 C -0.11 -1.83 4.07 30.59 0.12 -1.71 16 9 C -0.13 -1.90 5.61 29.85 0.17 -1.73 16 10 C 0.51 11.53 7.83 87.66 0.69 12.22 16 11 O -0.59 -19.07 15.58 -3.04 -0.05 -19.12 16 12 N -0.71 -13.54 5.36 -446.10 -2.39 -15.93 16 13 C 0.13 3.21 4.43 46.56 0.21 3.41 16 14 C 0.00 0.13 6.56 86.41 0.57 0.70 16 15 N -0.48 -15.75 5.95 -912.85 -5.43 -21.18 16 16 C 0.03 0.91 5.31 85.56 0.45 1.36 16 17 C 0.44 21.27 7.59 87.66 0.67 21.93 16 18 O -0.62 -35.93 15.13 -3.06 -0.05 -35.97 16 19 N -0.57 -29.72 5.29 -306.98 -1.62 -31.34 16 20 C -0.34 -19.43 9.68 84.04 0.81 -18.62 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 23 N -0.92 -49.56 13.05 21.66 0.28 -49.28 16 24 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 28 C 0.01 0.23 7.73 86.41 0.67 0.90 16 29 O -0.39 -6.79 10.32 -148.98 -1.54 -8.33 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 0.64 8.06 -2.39 -0.02 0.62 16 35 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.85 7.85 -2.39 -0.02 0.83 16 37 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 38 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 39 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 1.54 7.88 -2.39 -0.02 1.52 16 41 H 0.42 4.98 8.73 -92.71 -0.81 4.17 16 42 H 0.10 3.07 7.46 -2.39 -0.02 3.05 16 43 H 0.07 2.28 7.78 -2.39 -0.02 2.26 16 44 H 0.06 2.31 8.09 -2.39 -0.02 2.29 16 45 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 46 H 0.08 2.35 7.69 -2.39 -0.02 2.33 16 47 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 48 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 49 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.11 1.54 7.77 -2.39 -0.02 1.52 16 Total: -1.00 -79.05 408.47 -3.19 -82.25 By element: Atomic # 1 Polarization: 36.80 SS G_CDS: -0.59 Total: 36.21 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 6.17 Total: 17.11 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -9.16 Total: -117.73 kcal Atomic # 8 Polarization: -61.79 SS G_CDS: -1.63 Total: -63.42 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -79.05 -3.19 -82.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481604507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.194 kcal (2) G-P(sol) polarization free energy of solvation -79.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds