Wall clock time and date at job start Tue Mar 31 2020 23:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.27269 * 2 1 4 4 C 1.54947 * 110.39442 * 237.85681 * 2 1 3 5 5 C 1.55305 * 100.94425 * 204.59649 * 4 2 1 6 6 C 1.54387 * 102.24962 * 34.12994 * 5 4 2 7 7 H 1.09001 * 109.82490 * 98.25128 * 6 5 4 8 8 C 1.53003 * 109.82848 * 219.12874 * 6 5 4 9 9 C 1.53001 * 109.47181 * 185.00220 * 8 6 5 10 10 C 1.50697 * 109.47067 * 180.02562 * 9 8 6 11 11 O 1.21278 * 120.00119 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99880 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00080 * 179.97438 * 12 10 9 14 14 C 1.53933 * 113.73672 * 251.72950 * 13 12 10 15 15 N 1.47961 * 86.18226 * 221.92351 * 14 13 12 16 16 C 1.46898 * 111.00440 * 137.58190 * 15 14 13 17 17 C 1.50696 * 109.47133 * 90.63592 * 16 15 14 18 18 O 1.21297 * 120.00452 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00257 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00579 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99788 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00097 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00000 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99744 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47538 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47266 * 120.00183 * 24 22 20 27 27 H 1.48501 * 109.46871 * 239.99955 * 24 22 20 28 28 C 1.47956 * 90.76418 * 24.68425 * 15 14 13 29 29 O 1.43236 * 107.59079 * 338.64624 * 6 5 4 30 30 H 1.08998 * 109.46997 * 299.36318 * 1 2 3 31 31 H 1.08997 * 109.47228 * 59.36011 * 1 2 3 32 32 H 1.08997 * 109.46722 * 179.35970 * 1 2 3 33 33 H 1.09002 * 111.12827 * 86.67315 * 4 2 1 34 34 H 1.09008 * 111.12113 * 322.51283 * 4 2 1 35 35 H 1.08998 * 110.84418 * 275.94481 * 5 4 2 36 36 H 1.09003 * 110.84733 * 152.31891 * 5 4 2 37 37 H 1.08998 * 109.47041 * 305.00422 * 8 6 5 38 38 H 1.09001 * 109.46877 * 64.99975 * 8 6 5 39 39 H 1.09003 * 109.46631 * 300.00258 * 9 8 6 40 40 H 1.08998 * 109.46910 * 60.00097 * 9 8 6 41 41 H 0.96996 * 119.99791 * 359.97438 * 12 10 9 42 42 H 1.09008 * 112.93831 * 23.43406 * 13 12 10 43 43 H 1.08999 * 113.75763 * 336.23398 * 14 13 12 44 44 H 1.08995 * 113.76562 * 107.60230 * 14 13 12 45 45 H 1.08995 * 109.46956 * 210.63620 * 16 15 14 46 46 H 1.08997 * 109.46878 * 330.63688 * 16 15 14 47 47 H 0.97008 * 119.99346 * 0.02562 * 19 17 16 48 48 H 0.96998 * 119.99690 * 179.97438 * 23 22 20 49 49 H 1.09004 * 113.76140 * 220.99744 * 28 15 14 50 50 H 1.08999 * 113.75596 * 89.63065 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0700 -0.7727 -1.2297 5 6 3.4723 -1.2001 -0.7170 6 6 3.2126 -1.4394 0.7860 7 1 3.0667 -2.5036 0.9710 8 6 4.3991 -0.9280 1.6055 9 6 4.1904 -1.2805 3.0797 10 6 5.3588 -0.7763 3.8870 11 8 6.2690 -0.1930 3.3373 12 7 5.3927 -0.9746 5.2196 13 6 6.5287 -0.4850 6.0044 14 6 7.4566 -1.6021 6.5148 15 7 7.4982 -0.8499 7.7882 16 6 7.3913 -1.7566 8.9391 17 6 8.7701 -2.1832 9.3723 18 8 9.7461 -1.7721 8.7809 19 7 8.9190 -3.0209 10.4176 20 6 10.1734 -3.4086 10.8121 21 1 11.0423 -3.0426 10.2855 22 6 10.3269 -4.2718 11.8901 23 7 9.2696 -4.7169 12.5312 24 14 12.0361 -4.7996 12.4280 25 1 13.0501 -4.1640 11.5488 26 1 12.2650 -4.3781 13.8334 27 1 12.1520 -6.2767 12.3292 28 6 6.1930 -0.2232 7.4837 29 8 2.0286 -0.7157 1.1413 30 1 -0.3633 0.5039 0.8956 31 1 -0.3633 0.5237 -0.8842 32 1 -0.3633 -1.0276 -0.0115 33 1 2.1516 -0.1201 -2.0990 34 1 1.4506 -1.6422 -1.4503 35 1 4.1987 -0.4006 -0.8626 36 1 3.8006 -2.1178 -1.2049 37 1 5.3165 -1.3946 1.2467 38 1 4.4756 0.1539 1.4979 39 1 3.2729 -0.8139 3.4384 40 1 4.1139 -2.3625 3.1872 41 1 4.6649 -1.4415 5.6591 42 1 7.0551 0.3385 5.5216 43 1 6.9705 -2.5744 6.5949 44 1 8.4159 -1.6462 5.9992 45 1 6.8948 -1.2422 9.7619 46 1 6.8111 -2.6350 8.6568 47 1 8.1385 -3.3494 10.8908 48 1 9.3767 -5.3197 13.2835 49 1 6.1427 0.8345 7.7421 50 1 5.3373 -0.7922 7.8471 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481604509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:10 Heat of formation + Delta-G solvation = -94.747543 kcal Electronic energy + Delta-G solvation = -28466.484830 eV Core-core repulsion = 24301.299577 eV Total energy + Delta-G solvation = -4165.185253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.56588 -40.07747 -39.02991 -37.65221 -34.24594 -34.13387 -33.76341 -32.69054 -31.28760 -31.10464 -29.68958 -27.04338 -26.07727 -25.40744 -23.98125 -22.96041 -21.98284 -20.97959 -20.49486 -19.96803 -19.21496 -17.88425 -17.48751 -17.26378 -16.55174 -16.23486 -16.09499 -15.61006 -15.22658 -14.74387 -14.69886 -14.50909 -14.22127 -14.18459 -13.84791 -13.74966 -13.40087 -13.19069 -12.86024 -12.76287 -12.73806 -12.57935 -12.21924 -12.16269 -12.10530 -11.60094 -11.52682 -11.45450 -11.28777 -11.25082 -11.18559 -11.11638 -11.05164 -10.64714 -10.32415 -10.20013 -9.98294 -9.86889 -9.48886 -9.15602 -8.75457 -8.17479 -7.93678 -6.39729 -3.80175 2.50851 2.96842 3.17902 3.28257 3.33026 3.36068 3.91613 3.96877 4.04359 4.22171 4.26774 4.28831 4.47653 4.54454 4.66697 4.68770 4.83614 4.86227 4.90375 4.98390 5.01308 5.11054 5.18602 5.19853 5.22684 5.29229 5.32834 5.37133 5.40691 5.41591 5.51734 5.61149 5.63808 5.67739 5.70424 5.71911 5.82784 5.91348 5.94855 6.12141 6.26516 6.38575 6.56002 6.68698 7.12414 7.35057 7.57640 8.08721 8.09856 8.64704 9.21106 9.57058 10.09739 10.78322 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029743 B = 0.001471 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.174440 B =19031.311166 C =19095.044828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.069 0.931 4 C -0.153 4.153 5 C -0.153 4.153 6 C 0.080 3.920 7 H 0.081 0.919 8 C -0.112 4.112 9 C -0.137 4.137 10 C 0.513 3.487 11 O -0.540 6.540 12 N -0.723 5.723 13 C 0.117 3.883 14 C 0.000 4.000 15 N -0.445 5.445 16 C 0.013 3.987 17 C 0.446 3.554 18 O -0.573 6.573 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.904 5.904 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.009 4.009 29 O -0.374 6.374 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.400 0.600 42 H 0.124 0.876 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.096 0.904 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.466 5.928 -23.803 32.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 H 0.087 0.913 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.022 3.978 7 H 0.099 0.901 8 C -0.150 4.150 9 C -0.177 4.177 10 C 0.300 3.700 11 O -0.416 6.416 12 N -0.375 5.375 13 C 0.012 3.988 14 C -0.130 4.130 15 N -0.168 5.168 16 C -0.119 4.119 17 C 0.231 3.769 18 O -0.456 6.456 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.138 4.138 29 O -0.294 6.294 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.234 0.766 42 H 0.142 0.858 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.107 0.893 46 H 0.076 0.924 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.114 0.886 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.655 6.911 -24.061 31.828 hybrid contribution -0.629 -1.454 0.810 1.779 sum -20.284 5.457 -23.251 31.334 Atomic orbital electron populations 1.21882 0.93758 1.02759 1.02430 1.22952 0.94774 0.95659 0.84921 0.91295 1.23324 0.96309 1.00905 0.98500 1.23174 0.97763 1.02971 0.95105 1.22784 0.85322 0.96133 0.93531 0.90138 1.21734 0.97448 1.02857 0.93006 1.21632 0.97493 1.02775 0.95825 1.20822 0.87951 0.78884 0.82361 1.90712 1.38631 1.41653 1.70647 1.46122 1.24046 1.59526 1.07776 1.23045 0.87246 0.98262 0.90288 1.24472 1.00932 0.95872 0.91759 1.68348 1.25439 1.22100 1.00891 1.22465 0.97817 0.96115 0.95536 1.19679 0.89786 0.83685 0.83765 1.90535 1.40196 1.58217 1.56686 1.41874 1.09233 1.41473 1.27930 1.19757 0.85409 1.24894 1.12602 0.87898 1.25245 0.99220 0.97062 0.96468 1.69619 1.29082 1.33878 1.21963 0.85806 0.81939 0.78197 0.78449 1.19213 1.20762 1.20812 1.24422 0.93181 1.02291 0.93950 1.88436 1.41982 1.64842 1.34160 0.91811 0.91344 0.91970 0.90006 0.90323 0.90115 0.89912 0.90110 0.90660 0.88249 0.88984 0.76557 0.85799 0.91187 0.88560 0.89300 0.92447 0.77593 0.91998 0.88554 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.63 37.16 0.36 -0.41 16 2 C 0.07 0.47 4.07 -25.70 -0.10 0.36 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.15 -0.74 6.57 -24.48 -0.16 -0.90 16 5 C -0.15 -0.83 6.54 -24.78 -0.16 -0.99 16 6 C 0.08 0.55 3.51 -26.00 -0.09 0.45 16 7 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 8 C -0.11 -0.91 4.07 -26.73 -0.11 -1.02 16 9 C -0.14 -1.07 5.61 -27.88 -0.16 -1.22 16 10 C 0.51 5.70 7.83 -10.99 -0.09 5.62 16 11 O -0.54 -8.26 15.58 5.56 0.09 -8.17 16 12 N -0.72 -7.09 5.36 -54.95 -0.29 -7.38 16 13 C 0.12 1.46 4.43 -69.63 -0.31 1.15 16 14 C 0.00 0.00 7.75 -2.77 -0.02 -0.03 16 15 N -0.45 -7.46 5.65 -239.90 -1.36 -8.82 16 16 C 0.01 0.23 5.28 -4.98 -0.03 0.20 16 17 C 0.45 10.80 7.83 -10.99 -0.09 10.71 16 18 O -0.57 -16.20 16.01 5.54 0.09 -16.11 16 19 N -0.57 -14.60 5.29 -10.96 -0.06 -14.65 16 20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 21 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 24 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 C -0.01 -0.10 7.70 -2.77 -0.02 -0.12 16 29 O -0.37 -3.08 10.34 -35.23 -0.36 -3.45 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.35 8.06 -51.92 -0.42 -0.07 16 35 H 0.08 0.45 7.85 -51.93 -0.41 0.05 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.10 0.71 7.90 -51.93 -0.41 0.30 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.40 2.76 8.73 -40.82 -0.36 2.40 16 42 H 0.12 1.77 7.46 -51.92 -0.39 1.39 16 43 H 0.07 0.97 7.48 -51.93 -0.39 0.58 16 44 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 45 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 46 H 0.06 0.89 7.38 -51.93 -0.38 0.51 16 47 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 50 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 LS Contribution 409.97 15.07 6.18 6.18 Total: -1.00 -35.24 409.97 -9.72 -44.96 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -8.48 Total: 9.47 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -1.22 Total: 5.71 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.98 Total: -54.88 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.19 Total: -27.73 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.24 -9.72 -44.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481604509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.789 kcal (2) G-P(sol) polarization free energy of solvation -35.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds