Wall clock time and date at job start Tue Mar 31 2020 23:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.27269 * 2 1 4 4 C 1.54947 * 110.39442 * 237.85681 * 2 1 3 5 5 C 1.55305 * 100.94425 * 204.59649 * 4 2 1 6 6 C 1.54387 * 102.24962 * 34.12994 * 5 4 2 7 7 H 1.09001 * 109.82490 * 98.25128 * 6 5 4 8 8 C 1.53003 * 109.82848 * 219.12874 * 6 5 4 9 9 C 1.53001 * 109.47181 * 185.00220 * 8 6 5 10 10 C 1.50697 * 109.47067 * 180.02562 * 9 8 6 11 11 O 1.21278 * 120.00119 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99880 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00080 * 179.97438 * 12 10 9 14 14 C 1.53933 * 113.73672 * 251.72950 * 13 12 10 15 15 N 1.47961 * 86.18226 * 221.92351 * 14 13 12 16 16 C 1.46898 * 111.00440 * 137.58190 * 15 14 13 17 17 C 1.50696 * 109.47133 * 90.63592 * 16 15 14 18 18 O 1.21297 * 120.00452 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00257 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00579 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99788 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00097 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00000 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99744 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47538 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47266 * 120.00183 * 24 22 20 27 27 H 1.48501 * 109.46871 * 239.99955 * 24 22 20 28 28 C 1.47956 * 90.76418 * 24.68425 * 15 14 13 29 29 O 1.43236 * 107.59079 * 338.64624 * 6 5 4 30 30 H 1.08998 * 109.46997 * 299.36318 * 1 2 3 31 31 H 1.08997 * 109.47228 * 59.36011 * 1 2 3 32 32 H 1.08997 * 109.46722 * 179.35970 * 1 2 3 33 33 H 1.09002 * 111.12827 * 86.67315 * 4 2 1 34 34 H 1.09008 * 111.12113 * 322.51283 * 4 2 1 35 35 H 1.08998 * 110.84418 * 275.94481 * 5 4 2 36 36 H 1.09003 * 110.84733 * 152.31891 * 5 4 2 37 37 H 1.08998 * 109.47041 * 305.00422 * 8 6 5 38 38 H 1.09001 * 109.46877 * 64.99975 * 8 6 5 39 39 H 1.09003 * 109.46631 * 300.00258 * 9 8 6 40 40 H 1.08998 * 109.46910 * 60.00097 * 9 8 6 41 41 H 0.96996 * 119.99791 * 359.97438 * 12 10 9 42 42 H 1.09008 * 112.93831 * 23.43406 * 13 12 10 43 43 H 1.08999 * 113.75763 * 336.23398 * 14 13 12 44 44 H 1.08995 * 113.76562 * 107.60230 * 14 13 12 45 45 H 1.08995 * 109.46956 * 210.63620 * 16 15 14 46 46 H 1.08997 * 109.46878 * 330.63688 * 16 15 14 47 47 H 0.97008 * 119.99346 * 0.02562 * 19 17 16 48 48 H 0.96998 * 119.99690 * 179.97438 * 23 22 20 49 49 H 1.09004 * 113.76140 * 220.99744 * 28 15 14 50 50 H 1.08999 * 113.75596 * 89.63065 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0700 -0.7727 -1.2297 5 6 3.4723 -1.2001 -0.7170 6 6 3.2126 -1.4394 0.7860 7 1 3.0667 -2.5036 0.9710 8 6 4.3991 -0.9280 1.6055 9 6 4.1904 -1.2805 3.0797 10 6 5.3588 -0.7763 3.8870 11 8 6.2690 -0.1930 3.3373 12 7 5.3927 -0.9746 5.2196 13 6 6.5287 -0.4850 6.0044 14 6 7.4566 -1.6021 6.5148 15 7 7.4982 -0.8499 7.7882 16 6 7.3913 -1.7566 8.9391 17 6 8.7701 -2.1832 9.3723 18 8 9.7461 -1.7721 8.7809 19 7 8.9190 -3.0209 10.4176 20 6 10.1734 -3.4086 10.8121 21 1 11.0423 -3.0426 10.2855 22 6 10.3269 -4.2718 11.8901 23 7 9.2696 -4.7169 12.5312 24 14 12.0361 -4.7996 12.4280 25 1 13.0501 -4.1640 11.5488 26 1 12.2650 -4.3781 13.8334 27 1 12.1520 -6.2767 12.3292 28 6 6.1930 -0.2232 7.4837 29 8 2.0286 -0.7157 1.1413 30 1 -0.3633 0.5039 0.8956 31 1 -0.3633 0.5237 -0.8842 32 1 -0.3633 -1.0276 -0.0115 33 1 2.1516 -0.1201 -2.0990 34 1 1.4506 -1.6422 -1.4503 35 1 4.1987 -0.4006 -0.8626 36 1 3.8006 -2.1178 -1.2049 37 1 5.3165 -1.3946 1.2467 38 1 4.4756 0.1539 1.4979 39 1 3.2729 -0.8139 3.4384 40 1 4.1139 -2.3625 3.1872 41 1 4.6649 -1.4415 5.6591 42 1 7.0551 0.3385 5.5216 43 1 6.9705 -2.5744 6.5949 44 1 8.4159 -1.6462 5.9992 45 1 6.8948 -1.2422 9.7619 46 1 6.8111 -2.6350 8.6568 47 1 8.1385 -3.3494 10.8908 48 1 9.3767 -5.3197 13.2835 49 1 6.1427 0.8345 7.7421 50 1 5.3373 -0.7922 7.8471 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481604509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:09 Heat of formation + Delta-G solvation = -122.738703 kcal Electronic energy + Delta-G solvation = -28467.698617 eV Core-core repulsion = 24301.299577 eV Total energy + Delta-G solvation = -4166.399041 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61703 -40.71672 -40.15966 -39.37040 -35.96920 -35.04657 -34.83891 -33.29063 -33.16351 -31.79592 -30.91185 -27.84071 -27.18080 -26.99017 -25.17424 -23.85671 -22.43965 -21.68788 -21.34986 -21.07939 -20.82042 -19.90710 -18.14756 -17.96457 -17.89056 -17.55119 -16.86849 -16.61988 -16.55554 -16.30251 -15.91887 -15.71082 -15.28658 -15.10599 -14.90715 -14.66426 -14.48141 -14.24999 -13.85630 -13.73482 -13.66698 -13.51992 -13.25767 -13.22442 -13.01337 -12.73637 -12.64853 -12.58908 -12.44191 -12.35784 -12.13250 -12.01204 -11.89669 -11.76659 -11.67520 -11.59792 -11.51224 -10.92571 -10.41255 -10.38957 -10.11619 -10.01074 -9.70101 -8.47479 -5.95904 1.35622 1.40817 1.54971 1.62336 2.05325 2.09062 2.29583 2.80572 2.86086 3.18869 3.29818 3.53668 3.60350 3.67580 3.80122 3.84797 3.91036 4.10323 4.15303 4.20158 4.27515 4.27863 4.33516 4.39386 4.41939 4.51846 4.53168 4.61510 4.68555 4.76214 4.78048 4.79083 4.84400 4.93102 4.97971 4.98925 5.07267 5.15637 5.25993 5.33448 5.35468 5.37567 5.40560 5.46290 5.86123 6.06350 6.19160 6.55688 6.60934 7.13291 7.27036 7.56523 8.13886 8.70148 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029743 B = 0.001471 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.174440 B =19031.311166 C =19095.044828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 H 0.063 0.937 4 C -0.147 4.147 5 C -0.154 4.154 6 C 0.081 3.919 7 H 0.093 0.907 8 C -0.110 4.110 9 C -0.127 4.127 10 C 0.509 3.491 11 O -0.588 6.588 12 N -0.707 5.707 13 C 0.130 3.870 14 C -0.004 4.004 15 N -0.485 5.485 16 C 0.027 3.973 17 C 0.439 3.561 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.335 4.335 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.276 1.276 26 H -0.270 1.270 27 H -0.269 1.269 28 C 0.009 3.991 29 O -0.392 6.392 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.419 0.581 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.106 0.894 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.915 4.989 -23.751 34.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.007 3.993 3 H 0.081 0.919 4 C -0.184 4.184 5 C -0.191 4.191 6 C 0.023 3.977 7 H 0.110 0.890 8 C -0.148 4.148 9 C -0.166 4.166 10 C 0.298 3.702 11 O -0.468 6.468 12 N -0.360 5.360 13 C 0.023 3.977 14 C -0.134 4.134 15 N -0.208 5.208 16 C -0.104 4.104 17 C 0.226 3.774 18 O -0.508 6.508 19 N -0.212 5.212 20 C -0.464 4.464 21 H 0.093 0.907 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.201 1.201 26 H -0.195 1.195 27 H -0.195 1.195 28 C -0.120 4.120 29 O -0.313 6.313 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.257 0.743 42 H 0.118 0.882 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.132 0.868 46 H 0.105 0.895 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.124 0.876 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -22.178 5.953 -23.983 33.204 hybrid contribution 0.129 -1.124 0.767 1.367 sum -22.049 4.829 -23.216 32.380 Atomic orbital electron populations 1.21871 0.92869 1.02893 1.02856 1.23115 0.95537 0.95471 0.85131 0.91881 1.23314 0.95716 1.01167 0.98226 1.23196 0.98116 1.03405 0.94423 1.22810 0.84393 0.96425 0.94030 0.88965 1.21686 0.97923 1.01478 0.93731 1.21637 0.96064 1.04194 0.94750 1.21467 0.88145 0.77920 0.82650 1.90700 1.40659 1.43865 1.71585 1.45942 1.23636 1.59059 1.07349 1.22620 0.87487 0.96424 0.91138 1.24470 1.00071 0.97482 0.91404 1.68265 1.29151 1.22562 1.00822 1.22349 0.93428 0.97790 0.96855 1.20902 0.92128 0.82035 0.82329 1.90502 1.42795 1.59586 1.57924 1.41930 1.08587 1.42074 1.28646 1.19673 0.85942 1.26848 1.13960 0.90738 1.25990 1.02967 0.96310 0.95783 1.69665 1.30555 1.33740 1.22048 0.84898 0.77269 0.78188 0.78130 1.20116 1.19468 1.19453 1.24468 0.92025 1.03016 0.92458 1.88407 1.42320 1.65155 1.35377 0.92500 0.89812 0.91951 0.88839 0.89608 0.90773 0.88676 0.90938 0.92763 0.87001 0.86465 0.74309 0.88204 0.89532 0.92140 0.86807 0.89526 0.76902 0.91276 0.87576 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.63 71.98 0.69 -0.61 16 2 C 0.06 0.74 4.07 31.26 0.13 0.87 16 3 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.15 -1.19 6.57 32.05 0.21 -0.98 16 5 C -0.15 -1.50 6.54 31.86 0.21 -1.29 16 6 C 0.08 1.00 3.51 31.07 0.11 1.11 16 7 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 8 C -0.11 -1.74 4.07 30.60 0.12 -1.61 16 9 C -0.13 -1.76 5.61 29.85 0.17 -1.59 16 10 C 0.51 10.91 7.83 87.66 0.69 11.59 16 11 O -0.59 -18.48 15.58 -3.02 -0.05 -18.52 16 12 N -0.71 -12.49 5.36 -446.14 -2.39 -14.88 16 13 C 0.13 3.12 4.43 46.56 0.21 3.32 16 14 C 0.00 -0.12 7.75 86.40 0.67 0.55 16 15 N -0.48 -15.76 5.65 -912.91 -5.16 -20.92 16 16 C 0.03 0.93 5.28 85.56 0.45 1.38 16 17 C 0.44 21.48 7.83 87.66 0.69 22.16 16 18 O -0.62 -36.44 16.01 -3.08 -0.05 -36.49 16 19 N -0.57 -29.87 5.29 -306.99 -1.62 -31.50 16 20 C -0.33 -19.41 9.68 84.04 0.81 -18.60 16 21 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 23 N -0.92 -49.59 13.05 21.66 0.28 -49.30 16 24 Si 0.99 43.54 29.55 68.60 2.03 45.57 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 C 0.01 0.19 7.70 86.41 0.67 0.85 16 29 O -0.39 -5.99 10.34 -148.98 -1.54 -7.53 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.09 0.59 8.06 -2.38 -0.02 0.57 16 35 H 0.07 0.81 7.85 -2.39 -0.02 0.80 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 1.25 8.10 -2.39 -0.02 1.23 16 38 H 0.05 1.07 8.10 -2.39 -0.02 1.06 16 39 H 0.11 1.33 7.90 -2.39 -0.02 1.31 16 40 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.42 4.30 8.73 -92.71 -0.81 3.49 16 42 H 0.10 2.94 7.46 -2.38 -0.02 2.92 16 43 H 0.09 2.26 7.48 -2.39 -0.02 2.25 16 44 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.11 3.27 8.08 -2.39 -0.02 3.25 16 46 H 0.09 2.42 7.38 -2.39 -0.02 2.40 16 47 H 0.40 19.27 7.90 -92.70 -0.73 18.54 16 48 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 49 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 50 H 0.11 1.53 7.90 -2.39 -0.02 1.51 16 Total: -1.00 -79.72 409.97 -2.81 -82.52 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -0.59 Total: 34.00 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 6.29 Total: 17.05 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -8.89 Total: -116.60 kcal Atomic # 8 Polarization: -60.91 SS G_CDS: -1.64 Total: -62.54 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -79.72 -2.81 -82.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481604509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.214 kcal (2) G-P(sol) polarization free energy of solvation -79.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds