Wall clock time and date at job start Tue Mar 31 2020 23:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50693 * 120.00060 * 2 1 4 4 O 1.42904 * 109.47347 * 135.00253 * 3 2 1 5 5 C 1.42901 * 114.00472 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.46949 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00114 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99603 * 179.97438 * 6 5 4 9 9 C 1.46933 * 120.63331 * 0.02562 * 8 6 5 10 10 C 1.53188 * 108.77128 * 233.58627 * 9 8 6 11 11 C 1.53036 * 109.31594 * 305.35881 * 10 9 8 12 12 H 1.08997 * 109.45353 * 301.35664 * 11 10 9 13 13 N 1.46898 * 109.46151 * 181.38653 * 11 10 9 14 14 C 1.46906 * 110.99888 * 84.93455 * 13 11 10 15 15 C 1.50699 * 109.47140 * 180.02562 * 14 13 11 16 16 O 1.21297 * 119.99980 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00037 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99944 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00055 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99682 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00492 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99897 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46948 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47378 * 120.00054 * 22 20 18 25 25 H 1.48501 * 109.47174 * 239.99969 * 22 20 18 26 26 C 1.53038 * 109.53393 * 61.37009 * 11 10 9 27 27 H 1.09000 * 109.50103 * 58.61947 * 26 11 10 28 28 C 1.53002 * 109.49859 * 178.68349 * 26 11 10 29 29 C 1.46923 * 120.63090 * 179.97438 * 8 6 5 30 30 H 1.07992 * 120.00156 * 179.97438 * 1 2 3 31 31 H 1.08008 * 119.99767 * 359.97438 * 1 2 3 32 32 H 1.07995 * 119.99723 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.47263 * 15.00435 * 3 2 1 34 34 H 1.09000 * 109.47632 * 254.99671 * 3 2 1 35 35 H 1.09006 * 109.46796 * 59.99842 * 5 4 3 36 36 H 1.08996 * 109.46777 * 299.99713 * 5 4 3 37 37 H 1.08997 * 109.58203 * 353.37235 * 9 8 6 38 38 H 1.08996 * 109.58824 * 113.65290 * 9 8 6 39 39 H 1.09009 * 109.49637 * 185.41165 * 10 9 8 40 40 H 1.08999 * 109.50232 * 65.31824 * 10 9 8 41 41 H 1.00902 * 111.00533 * 320.97862 * 13 11 10 42 42 H 1.09000 * 109.47033 * 300.00113 * 14 13 11 43 43 H 1.09001 * 109.46544 * 60.00058 * 14 13 11 44 44 H 0.96996 * 119.99844 * 359.97438 * 17 15 14 45 45 H 0.97001 * 120.00876 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.47002 * 59.99420 * 28 26 11 47 47 H 1.08996 * 109.47413 * 180.02562 * 28 26 11 48 48 H 1.09004 * 109.47247 * 299.99829 * 28 26 11 49 49 H 1.09004 * 109.58509 * 6.63022 * 29 8 6 50 50 H 1.09000 * 109.70720 * 246.27065 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9078 2.4352 1.0329 6 6 4.9934 2.2570 2.0629 7 8 5.0891 1.2105 2.6682 8 7 5.8585 3.2603 2.3105 9 6 5.7556 4.5338 1.5848 10 6 7.1139 4.8515 0.9516 11 6 8.1946 4.8310 2.0350 12 1 7.9495 5.5613 2.8061 13 7 9.4934 5.1679 1.4370 14 6 9.6787 6.6235 1.3662 15 6 11.0185 6.9299 0.7482 16 8 11.7477 6.0247 0.4013 17 7 11.4071 8.2096 0.5818 18 6 12.6259 8.4883 0.0191 19 1 13.2747 7.6824 -0.2905 20 6 13.0262 9.8077 -0.1528 21 7 12.2365 10.7884 0.2234 22 14 14.6864 10.1875 -0.9202 23 1 15.3792 8.9174 -1.2549 24 1 14.4893 10.9853 -2.1571 25 1 15.5110 10.9619 0.0420 26 6 8.2673 3.4355 2.6590 27 1 8.4884 2.7015 1.8841 28 6 9.3702 3.4069 3.7191 29 6 6.9218 3.1019 3.3120 30 1 -0.5400 -0.9352 -0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8499 -0.9353 0.0004 33 1 1.3855 2.1160 0.2661 34 1 2.4756 1.4868 -0.9926 35 1 3.2678 3.2694 1.3206 36 1 4.3580 2.6407 0.0618 37 1 4.9994 4.4495 0.8045 38 1 5.4785 5.3280 2.2780 39 1 7.0787 5.8391 0.4915 40 1 7.3453 4.1041 0.1927 41 1 9.5924 4.7460 0.5258 42 1 8.8888 7.0610 0.7556 43 1 9.6367 7.0443 2.3708 44 1 10.8242 8.9335 0.8595 45 1 12.5161 11.7095 0.1037 46 1 9.1481 4.1403 4.4943 47 1 9.4219 2.4128 4.1629 48 1 10.3267 3.6473 3.2548 49 1 6.9350 2.0728 3.6712 50 1 6.7432 3.7784 4.1478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482420048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:07 Heat of formation + Delta-G solvation = -93.407265 kcal Electronic energy + Delta-G solvation = -29181.610986 eV Core-core repulsion = 25016.483852 eV Total energy + Delta-G solvation = -4165.127134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63696 -38.91861 -38.20493 -37.60129 -35.19629 -34.30041 -33.93879 -33.21133 -31.32398 -30.96077 -29.25777 -27.10729 -26.62234 -25.53504 -24.59476 -23.33105 -22.39980 -20.73294 -20.41651 -19.57730 -19.07389 -17.91562 -17.82887 -16.87691 -16.83732 -16.29783 -15.92594 -15.57345 -15.28896 -15.03043 -14.92201 -14.65480 -14.38364 -14.04234 -13.91158 -13.89989 -13.62369 -13.29388 -12.97818 -12.73284 -12.54038 -12.46823 -12.33779 -12.21094 -12.00425 -11.64793 -11.58365 -11.46372 -11.42249 -11.16410 -11.05108 -10.83249 -10.50502 -10.44178 -10.36397 -10.24712 -9.98686 -9.77908 -9.54536 -8.95270 -8.48394 -8.05602 -7.97981 -6.44515 -3.85273 1.66294 2.30993 2.44201 3.14341 3.25258 3.32459 3.46737 3.87886 4.03537 4.14210 4.26196 4.37353 4.52075 4.61188 4.65183 4.68796 4.71825 4.73694 4.88307 4.93534 5.00165 5.02630 5.08164 5.20215 5.22631 5.29620 5.40181 5.44808 5.49956 5.55786 5.65198 5.71506 5.83156 5.87971 5.96017 6.07869 6.11015 6.13866 6.19112 6.22689 6.30861 6.55745 6.62654 7.06498 7.19781 7.52904 7.62104 7.89152 8.04003 8.58474 9.15551 9.51657 10.03022 10.73228 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021282 B = 0.001767 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.357427 B =15839.274141 C =16617.431944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.045 3.955 6 C 0.517 3.483 7 O -0.520 6.520 8 N -0.611 5.611 9 C 0.110 3.890 10 C -0.170 4.170 11 C 0.093 3.907 12 H 0.079 0.921 13 N -0.659 5.659 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.090 4.090 27 H 0.074 0.926 28 C -0.136 4.136 29 C 0.117 3.883 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.350 0.650 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.050 0.950 47 H 0.047 0.953 48 H 0.080 0.920 49 H 0.094 0.906 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.577 -12.045 2.033 25.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.168 4.168 3 C 0.010 3.990 4 O -0.278 6.278 5 C -0.035 4.035 6 C 0.304 3.696 7 O -0.395 6.395 8 N -0.346 5.346 9 C -0.013 4.013 10 C -0.210 4.210 11 C -0.018 4.018 12 H 0.097 0.903 13 N -0.289 5.289 14 C -0.081 4.081 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.110 4.110 27 H 0.092 0.908 28 C -0.194 4.194 29 C -0.005 4.005 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.169 0.831 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.099 0.901 49 H 0.112 0.888 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.602 -13.247 2.810 25.496 hybrid contribution -0.259 1.479 -1.242 1.948 sum -21.861 -11.768 1.567 24.877 Atomic orbital electron populations 1.23849 0.95484 1.02374 0.99924 1.22709 0.95619 0.98168 1.00308 1.21631 0.88690 0.96300 0.92380 1.88044 1.44360 1.34917 1.60525 1.22258 0.93217 0.89224 0.98807 1.20168 0.82354 0.83550 0.83571 1.90728 1.72154 1.26579 1.50032 1.48081 1.31329 1.14373 1.40826 1.21744 0.98090 0.85468 0.96038 1.22752 0.95558 1.02821 0.99827 1.21622 0.87399 0.96983 0.95817 0.90258 1.60153 1.29268 1.09235 1.30285 1.21700 0.96379 0.88981 1.01065 1.19828 0.88643 0.83752 0.85220 1.90532 1.55729 1.45311 1.55107 1.41871 1.18193 1.05542 1.54474 1.19756 0.94269 0.92836 1.35997 0.87873 1.25253 0.99669 0.95170 0.97821 1.69612 1.37217 0.99755 1.47749 0.85808 0.81469 0.78632 0.78492 1.19209 1.20787 1.20734 1.21445 0.94062 0.96754 0.98775 0.90789 1.21642 0.99625 1.00548 0.97603 1.21792 0.85232 1.03538 0.89949 0.87651 0.88392 0.86362 0.92511 0.91980 0.90227 0.90105 0.90073 0.90683 0.90237 0.90987 0.83053 0.93996 0.89666 0.77509 0.91932 0.93127 0.93406 0.90073 0.88759 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 14.31 29.01 0.42 -0.60 16 2 C -0.15 -1.08 9.89 -36.03 -0.36 -1.44 16 3 C 0.09 0.62 6.35 36.00 0.23 0.85 16 4 O -0.36 -3.85 9.86 -55.14 -0.54 -4.39 16 5 C 0.04 0.37 4.76 36.01 0.17 0.54 16 6 C 0.52 5.92 7.78 -10.99 -0.09 5.84 16 7 O -0.52 -8.26 15.91 -14.35 -0.23 -8.49 16 8 N -0.61 -5.81 2.97 -172.74 -0.51 -6.32 16 9 C 0.11 0.76 6.34 -3.71 -0.02 0.74 16 10 C -0.17 -1.46 5.33 -26.62 -0.14 -1.61 16 11 C 0.09 1.00 1.89 -67.68 -0.13 0.87 16 12 H 0.08 0.83 7.80 -51.93 -0.40 0.43 16 13 N -0.66 -9.60 5.05 -107.95 -0.55 -10.15 16 14 C 0.05 0.83 5.96 -4.97 -0.03 0.80 16 15 C 0.44 10.00 7.82 -10.99 -0.09 9.91 16 16 O -0.58 -15.43 15.78 5.54 0.09 -15.34 16 17 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 18 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 19 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 22 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C -0.09 -0.97 2.60 -90.48 -0.23 -1.21 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 C -0.14 -1.55 9.03 37.16 0.34 -1.21 16 29 C 0.12 1.18 5.72 -3.69 -0.02 1.16 16 30 H 0.11 0.48 8.06 -52.49 -0.42 0.05 16 31 H 0.10 0.44 7.90 -52.48 -0.41 0.03 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.06 0.31 7.86 -51.93 -0.41 -0.09 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.45 7.94 -51.93 -0.41 0.04 16 36 H 0.08 0.50 7.69 -51.93 -0.40 0.10 16 37 H 0.08 0.39 5.93 -51.93 -0.31 0.08 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.67 7.42 -51.92 -0.39 0.28 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.35 5.43 8.18 -39.29 -0.32 5.11 16 42 H 0.04 0.60 7.41 -51.93 -0.38 0.21 16 43 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 44 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.08 1.13 7.57 -51.93 -0.39 0.73 16 49 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 408.99 15.07 6.16 6.16 Total: -1.00 -34.08 408.99 -8.39 -42.46 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -8.25 Total: 10.88 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.20 Total: 6.78 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.39 Total: -53.84 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.68 Total: -28.22 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.08 -8.39 -42.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482420048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.943 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds