Wall clock time and date at job start Tue Mar 31 2020 23:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50693 * 120.00060 * 2 1 4 4 O 1.42904 * 109.47347 * 135.00253 * 3 2 1 5 5 C 1.42901 * 114.00472 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.46949 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00114 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99603 * 179.97438 * 6 5 4 9 9 C 1.46933 * 120.63331 * 0.02562 * 8 6 5 10 10 C 1.53188 * 108.77128 * 233.58627 * 9 8 6 11 11 C 1.53036 * 109.31594 * 305.35881 * 10 9 8 12 12 H 1.08997 * 109.45353 * 301.35664 * 11 10 9 13 13 N 1.46898 * 109.46151 * 181.38653 * 11 10 9 14 14 C 1.46906 * 110.99888 * 84.93455 * 13 11 10 15 15 C 1.50699 * 109.47140 * 180.02562 * 14 13 11 16 16 O 1.21297 * 119.99980 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00037 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99944 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00055 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99682 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00492 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99897 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46948 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47378 * 120.00054 * 22 20 18 25 25 H 1.48501 * 109.47174 * 239.99969 * 22 20 18 26 26 C 1.53038 * 109.53393 * 61.37009 * 11 10 9 27 27 H 1.09000 * 109.50103 * 58.61947 * 26 11 10 28 28 C 1.53002 * 109.49859 * 178.68349 * 26 11 10 29 29 C 1.46923 * 120.63090 * 179.97438 * 8 6 5 30 30 H 1.07992 * 120.00156 * 179.97438 * 1 2 3 31 31 H 1.08008 * 119.99767 * 359.97438 * 1 2 3 32 32 H 1.07995 * 119.99723 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.47263 * 15.00435 * 3 2 1 34 34 H 1.09000 * 109.47632 * 254.99671 * 3 2 1 35 35 H 1.09006 * 109.46796 * 59.99842 * 5 4 3 36 36 H 1.08996 * 109.46777 * 299.99713 * 5 4 3 37 37 H 1.08997 * 109.58203 * 353.37235 * 9 8 6 38 38 H 1.08996 * 109.58824 * 113.65290 * 9 8 6 39 39 H 1.09009 * 109.49637 * 185.41165 * 10 9 8 40 40 H 1.08999 * 109.50232 * 65.31824 * 10 9 8 41 41 H 1.00902 * 111.00533 * 320.97862 * 13 11 10 42 42 H 1.09000 * 109.47033 * 300.00113 * 14 13 11 43 43 H 1.09001 * 109.46544 * 60.00058 * 14 13 11 44 44 H 0.96996 * 119.99844 * 359.97438 * 17 15 14 45 45 H 0.97001 * 120.00876 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.47002 * 59.99420 * 28 26 11 47 47 H 1.08996 * 109.47413 * 180.02562 * 28 26 11 48 48 H 1.09004 * 109.47247 * 299.99829 * 28 26 11 49 49 H 1.09004 * 109.58509 * 6.63022 * 29 8 6 50 50 H 1.09000 * 109.70720 * 246.27065 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9078 2.4352 1.0329 6 6 4.9934 2.2570 2.0629 7 8 5.0891 1.2105 2.6682 8 7 5.8585 3.2603 2.3105 9 6 5.7556 4.5338 1.5848 10 6 7.1139 4.8515 0.9516 11 6 8.1946 4.8310 2.0350 12 1 7.9495 5.5613 2.8061 13 7 9.4934 5.1679 1.4370 14 6 9.6787 6.6235 1.3662 15 6 11.0185 6.9299 0.7482 16 8 11.7477 6.0247 0.4013 17 7 11.4071 8.2096 0.5818 18 6 12.6259 8.4883 0.0191 19 1 13.2747 7.6824 -0.2905 20 6 13.0262 9.8077 -0.1528 21 7 12.2365 10.7884 0.2234 22 14 14.6864 10.1875 -0.9202 23 1 15.3792 8.9174 -1.2549 24 1 14.4893 10.9853 -2.1571 25 1 15.5110 10.9619 0.0420 26 6 8.2673 3.4355 2.6590 27 1 8.4884 2.7015 1.8841 28 6 9.3702 3.4069 3.7191 29 6 6.9218 3.1019 3.3120 30 1 -0.5400 -0.9352 -0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8499 -0.9353 0.0004 33 1 1.3855 2.1160 0.2661 34 1 2.4756 1.4868 -0.9926 35 1 3.2678 3.2694 1.3206 36 1 4.3580 2.6407 0.0618 37 1 4.9994 4.4495 0.8045 38 1 5.4785 5.3280 2.2780 39 1 7.0787 5.8391 0.4915 40 1 7.3453 4.1041 0.1927 41 1 9.5924 4.7460 0.5258 42 1 8.8888 7.0610 0.7556 43 1 9.6367 7.0443 2.3708 44 1 10.8242 8.9335 0.8595 45 1 12.5161 11.7095 0.1037 46 1 9.1481 4.1403 4.4943 47 1 9.4219 2.4128 4.1629 48 1 10.3267 3.6473 3.2548 49 1 6.9350 2.0728 3.6712 50 1 6.7432 3.7784 4.1478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482420048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:06 Heat of formation + Delta-G solvation = -117.656556 kcal Electronic energy + Delta-G solvation = -29182.662514 eV Core-core repulsion = 25016.483852 eV Total energy + Delta-G solvation = -4166.178662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.44899 -40.20598 -39.37868 -38.51226 -36.33637 -35.77347 -34.80952 -34.15986 -33.23805 -31.95026 -29.95470 -28.44972 -27.36015 -26.48666 -25.90748 -24.36307 -23.26429 -21.57286 -21.14386 -20.86437 -20.15936 -19.82146 -18.56321 -17.77013 -17.53526 -17.44929 -16.90587 -16.65828 -16.38387 -16.16370 -16.06571 -15.77699 -15.45434 -15.41212 -15.14439 -14.77299 -14.59621 -14.16750 -13.94316 -13.79445 -13.50930 -13.40390 -13.36771 -13.13966 -13.10929 -12.95201 -12.88151 -12.71778 -12.41238 -12.37737 -12.11633 -11.96322 -11.89000 -11.73038 -11.49771 -11.39580 -11.00749 -10.82255 -10.30867 -10.26763 -9.99120 -9.75170 -9.17895 -8.45615 -5.93732 1.18305 1.37063 1.42755 1.49791 1.56301 1.76432 2.08584 2.30071 2.89277 2.94834 3.22287 3.48348 3.53540 3.68609 3.91133 4.00381 4.03153 4.08563 4.13503 4.20473 4.23959 4.31621 4.35558 4.43218 4.45006 4.48919 4.57191 4.60138 4.62527 4.72463 4.75314 4.79078 4.80912 4.97397 4.98989 5.14409 5.19455 5.34741 5.40771 5.42794 5.58908 5.65628 5.69812 5.94402 6.06566 6.17738 6.34179 6.44612 6.62668 7.09202 7.15113 7.59404 8.15290 8.71813 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021282 B = 0.001767 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.357427 B =15839.274141 C =16617.431944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.179 4.179 3 C 0.084 3.916 4 O -0.398 6.398 5 C 0.046 3.954 6 C 0.508 3.492 7 O -0.577 6.577 8 N -0.606 5.606 9 C 0.109 3.891 10 C -0.164 4.164 11 C 0.095 3.905 12 H 0.092 0.908 13 N -0.674 5.674 14 C 0.069 3.931 15 C 0.437 3.563 16 O -0.625 6.625 17 N -0.574 5.574 18 C -0.333 4.333 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.990 3.010 23 H -0.275 1.275 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.083 4.083 27 H 0.054 0.946 28 C -0.132 4.132 29 C 0.121 3.879 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.342 0.658 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.060 0.940 47 H 0.051 0.949 48 H 0.052 0.948 49 H 0.073 0.927 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.764 -10.244 1.713 26.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.009 3.991 4 O -0.318 6.318 5 C -0.033 4.033 6 C 0.297 3.703 7 O -0.457 6.457 8 N -0.340 5.340 9 C -0.013 4.013 10 C -0.204 4.204 11 C -0.015 4.015 12 H 0.111 0.889 13 N -0.305 5.305 14 C -0.063 4.063 15 C 0.225 3.775 16 O -0.512 6.512 17 N -0.211 5.211 18 C -0.463 4.463 19 H 0.094 0.906 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.814 3.186 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.103 4.103 27 H 0.073 0.927 28 C -0.190 4.190 29 C -0.002 4.002 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.161 0.839 42 H 0.089 0.911 43 H 0.121 0.879 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.092 0.908 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.820 -11.398 2.490 26.524 hybrid contribution 0.399 0.860 -1.121 1.468 sum -23.422 -10.538 1.369 25.719 Atomic orbital electron populations 1.24062 0.94980 1.03542 0.97697 1.22787 0.96362 0.98090 1.02451 1.21796 0.88293 0.96672 0.92387 1.88002 1.45540 1.36461 1.61750 1.22406 0.92698 0.89470 0.98730 1.20888 0.82974 0.82865 0.83551 1.90700 1.73807 1.28842 1.52308 1.48174 1.30405 1.15030 1.40380 1.21993 0.97731 0.84487 0.97070 1.22671 0.95621 1.03262 0.98809 1.21676 0.86386 0.96810 0.96621 0.88941 1.60109 1.32193 1.08140 1.30023 1.21539 0.92770 0.90314 1.01700 1.21003 0.90436 0.82491 0.83607 1.90504 1.57750 1.46395 1.56548 1.41928 1.17687 1.06517 1.54969 1.19677 0.95662 0.92826 1.38112 0.90550 1.25969 1.02785 0.94568 0.97745 1.69661 1.38410 1.00117 1.47814 0.84916 0.77491 0.78072 0.78134 1.19998 1.19565 1.19718 1.21334 0.94335 0.96543 0.98046 0.92709 1.21573 0.98429 1.01139 0.97868 1.21667 0.85045 1.02800 0.90643 0.86843 0.86846 0.87806 0.90551 0.90719 0.86915 0.87696 0.87103 0.88524 0.89070 0.91871 0.83942 0.91062 0.87884 0.76918 0.91340 0.92046 0.92979 0.92889 0.90821 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 14.31 67.78 0.97 -0.64 16 2 C -0.18 -2.47 9.89 25.64 0.25 -2.21 16 3 C 0.08 1.06 6.35 71.23 0.45 1.51 16 4 O -0.40 -8.09 9.86 -129.94 -1.28 -9.38 16 5 C 0.05 0.64 4.76 71.24 0.34 0.98 16 6 C 0.51 11.10 7.78 87.66 0.68 11.78 16 7 O -0.58 -18.81 15.91 16.01 0.25 -18.55 16 8 N -0.61 -10.30 2.97 -818.83 -2.43 -12.74 16 9 C 0.11 1.08 6.34 86.36 0.55 1.63 16 10 C -0.16 -2.33 5.33 30.67 0.16 -2.17 16 11 C 0.09 1.85 1.89 44.94 0.08 1.93 16 12 H 0.09 1.61 7.80 -2.39 -0.02 1.59 16 13 N -0.67 -19.01 5.05 -495.44 -2.50 -21.51 16 14 C 0.07 2.11 5.96 85.56 0.51 2.62 16 15 C 0.44 19.91 7.82 87.66 0.69 20.60 16 16 O -0.63 -33.98 15.78 -3.08 -0.05 -34.03 16 17 N -0.57 -28.47 5.29 -306.98 -1.62 -30.09 16 18 C -0.33 -18.64 9.68 84.04 0.81 -17.82 16 19 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 20 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 21 N -0.92 -48.46 13.05 21.66 0.28 -48.18 16 22 Si 0.99 42.41 29.55 68.60 2.03 44.44 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 C -0.08 -1.73 2.60 -10.70 -0.03 -1.76 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 28 C -0.13 -2.99 9.03 71.98 0.65 -2.34 16 29 C 0.12 2.32 5.72 86.38 0.49 2.81 16 30 H 0.11 0.87 8.06 -2.91 -0.02 0.84 16 31 H 0.11 0.73 7.90 -2.91 -0.02 0.71 16 32 H 0.10 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.08 0.62 7.86 -2.39 -0.02 0.60 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 0.80 7.94 -2.38 -0.02 0.78 16 36 H 0.11 0.93 7.69 -2.39 -0.02 0.92 16 37 H 0.11 0.50 5.93 -2.39 -0.01 0.49 16 38 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.09 1.15 7.42 -2.38 -0.02 1.14 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.34 10.56 8.18 -89.69 -0.73 9.83 16 42 H 0.07 1.80 7.41 -2.39 -0.02 1.79 16 43 H 0.10 2.84 8.05 -2.39 -0.02 2.83 16 44 H 0.40 18.52 7.90 -92.71 -0.73 17.79 16 45 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 46 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.05 1.51 7.57 -2.38 -0.02 1.49 16 49 H 0.07 1.75 7.01 -2.39 -0.02 1.73 16 50 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -77.66 408.99 1.24 -76.41 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: -0.52 Total: 36.81 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 7.09 Total: 16.82 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -6.28 Total: -112.52 kcal Atomic # 8 Polarization: -60.89 SS G_CDS: -1.07 Total: -61.96 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -77.66 1.24 -76.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482420048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.242 kcal (2) G-P(sol) polarization free energy of solvation -77.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds