Wall clock time and date at job start Tue Mar 31 2020 23:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09010 * 115.54946 * 2 1 4 4 C 1.52992 * 117.52253 * 145.69869 * 2 1 3 5 5 C 1.52997 * 60.00268 * 107.48066 * 4 2 1 6 6 H 1.09001 * 117.51441 * 107.48061 * 5 4 2 7 7 C 1.50691 * 117.50443 * 252.51433 * 5 4 2 8 8 O 1.21277 * 120.00157 * 68.61869 * 7 5 4 9 9 N 1.34773 * 120.00327 * 248.62124 * 7 5 4 10 10 C 1.46499 * 120.00590 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.47298 * 174.56132 * 10 9 7 12 12 N 1.46896 * 109.54551 * 305.47562 * 11 10 9 13 13 C 1.46902 * 111.00379 * 305.29541 * 12 11 10 14 14 C 1.50696 * 109.47643 * 184.18307 * 13 12 11 15 15 O 1.21294 * 119.99780 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00047 * 179.97438 * 14 13 12 17 17 C 1.37098 * 119.99842 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00255 * 0.02562 * 17 16 14 19 19 C 1.38946 * 120.00063 * 179.97438 * 17 16 14 20 20 N 1.31416 * 120.00252 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 120.00020 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46891 * 89.99670 * 21 19 17 23 23 H 1.48491 * 109.47085 * 209.99899 * 21 19 17 24 24 H 1.48499 * 109.46992 * 330.00229 * 21 19 17 25 25 C 1.53173 * 109.54377 * 65.65436 * 11 10 9 26 26 C 1.53279 * 109.06545 * 176.85014 * 25 11 10 27 27 O 1.42907 * 109.46167 * 302.44754 * 26 25 11 28 28 C 1.42907 * 114.09750 * 61.15676 * 27 26 25 29 29 C 1.53092 * 109.41118 * 298.84101 * 28 27 26 30 30 H 1.08995 * 109.47113 * 205.67116 * 1 2 3 31 31 H 1.09009 * 109.47369 * 325.66794 * 1 2 3 32 32 H 1.09000 * 109.47567 * 85.66943 * 1 2 3 33 33 H 1.09001 * 117.49792 * 359.97438 * 4 2 1 34 34 H 1.08997 * 117.50628 * 214.97027 * 4 2 1 35 35 H 0.97003 * 119.99744 * 359.97438 * 9 7 5 36 36 H 1.09001 * 109.47033 * 54.56117 * 10 9 7 37 37 H 1.08996 * 109.47032 * 294.56370 * 10 9 7 38 38 H 1.00899 * 111.00223 * 69.24426 * 12 11 10 39 39 H 1.09003 * 109.46700 * 304.18298 * 13 12 11 40 40 H 1.09006 * 109.47132 * 64.17596 * 13 12 11 41 41 H 0.96999 * 120.00119 * 0.02562 * 16 14 13 42 42 H 0.96998 * 120.00088 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.52418 * 296.84426 * 25 11 10 44 44 H 1.09006 * 109.52214 * 57.03053 * 25 11 10 45 45 H 1.09000 * 109.45955 * 182.44966 * 26 25 11 46 46 H 1.09007 * 109.46754 * 62.44895 * 26 25 11 47 47 H 1.08998 * 109.47806 * 178.86113 * 28 27 26 48 48 H 1.08998 * 109.49041 * 58.83018 * 28 27 26 49 49 H 1.08996 * 109.52577 * 297.70131 * 29 28 27 50 50 H 1.08997 * 109.57128 * 177.54459 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2369 -1.1208 0.7646 5 6 2.2364 -1.1207 -0.7654 6 1 3.1711 -0.8745 -1.2692 7 6 1.3720 -2.1404 -1.4611 8 8 0.1639 -2.0533 -1.4011 9 7 1.9415 -3.1491 -2.1499 10 6 1.1012 -4.1407 -2.8258 11 6 1.9849 -5.0887 -3.6390 12 7 2.8332 -4.3093 -4.5505 13 6 2.0225 -3.4208 -5.3938 14 6 2.9141 -2.7154 -6.3830 15 8 4.1076 -2.9313 -6.3849 16 7 2.3852 -1.8448 -7.2654 17 6 3.1965 -1.2027 -8.1649 18 1 4.2593 -1.3949 -8.1667 19 6 2.6513 -0.3055 -9.0751 20 7 3.4288 0.3096 -9.9377 21 14 0.8129 0.0265 -9.0725 22 1 0.5154 1.1573 -8.1572 23 1 0.3706 0.3726 -10.4471 24 1 0.0915 -1.1867 -8.6111 25 6 2.8674 -5.9063 -2.6909 26 6 3.6902 -6.9067 -3.5106 27 8 2.8099 -7.7426 -4.2645 28 6 1.9934 -7.0359 -5.2005 29 6 1.1024 -6.0425 -4.4501 30 1 -0.3633 -0.9262 0.4452 31 1 -0.3634 0.8487 0.5796 32 1 -0.3634 0.0776 -1.0247 33 1 1.6120 -1.8584 1.2683 34 1 3.1721 -0.8749 1.2676 35 1 2.9078 -3.2186 -2.1982 36 1 0.4041 -3.6326 -3.4921 37 1 0.5436 -4.7112 -2.0831 38 1 3.5288 -3.7870 -4.0392 39 1 1.2781 -4.0089 -5.9306 40 1 1.5202 -2.6836 -4.7672 41 1 1.4308 -1.6719 -7.2636 42 1 3.0482 0.9363 -10.5728 43 1 3.5369 -5.2381 -2.1493 44 1 2.2388 -6.4462 -1.9827 45 1 4.2886 -7.5217 -2.8384 46 1 4.3482 -6.3651 -4.1903 47 1 1.3693 -7.7440 -5.7457 48 1 2.6288 -6.4959 -5.9025 49 1 0.4381 -6.5850 -3.7775 50 1 0.5099 -5.4714 -5.1648 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484178860.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:38 Heat of formation + Delta-G solvation = -84.311256 kcal Electronic energy + Delta-G solvation = -31134.650062 eV Core-core repulsion = 26969.917361 eV Total energy + Delta-G solvation = -4164.732702 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.78091 -39.80126 -38.31365 -37.21043 -36.26796 -34.15187 -33.77913 -31.86613 -31.54502 -31.16781 -28.98103 -27.62712 -26.80116 -24.41047 -24.29091 -23.34996 -22.33300 -21.25393 -20.21224 -19.45618 -19.20397 -18.41569 -17.44389 -16.58850 -16.48374 -15.96615 -15.83437 -15.55548 -15.39516 -15.11014 -14.85893 -14.78289 -14.50620 -14.09803 -13.90013 -13.43623 -13.27885 -13.05861 -12.93229 -12.77731 -12.54820 -12.47899 -12.39727 -12.35646 -12.30321 -11.92319 -11.70980 -11.63558 -11.33776 -11.18021 -10.65695 -10.61355 -10.51052 -10.35080 -10.32563 -10.01029 -9.73971 -9.61042 -9.57523 -9.28046 -8.69086 -8.26433 -8.20586 -6.34597 -3.86165 2.32830 2.88371 3.00517 3.05133 3.13417 3.54372 3.68704 3.85885 3.94957 4.07546 4.32860 4.36933 4.42256 4.53034 4.58824 4.66719 4.82885 4.89539 4.95104 5.14786 5.16737 5.25297 5.27737 5.33968 5.38282 5.43007 5.46848 5.55335 5.57761 5.60042 5.64696 5.65840 5.73139 5.78283 5.80376 5.87432 5.92137 5.93937 5.98682 6.13988 6.16683 6.35961 6.90584 7.23881 7.24903 7.34835 7.53936 8.05367 8.10256 8.55580 8.91140 9.38676 9.78099 10.78368 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007060 B = 0.004348 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3964.847805 B = 6437.719596 C = 9314.377638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 H 0.112 0.888 4 C -0.151 4.151 5 C -0.196 4.196 6 H 0.125 0.875 7 C 0.545 3.455 8 O -0.534 6.534 9 N -0.725 5.725 10 C 0.091 3.909 11 C 0.102 3.898 12 N -0.648 5.648 13 C 0.042 3.958 14 C 0.451 3.549 15 O -0.564 6.564 16 N -0.589 5.589 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.043 3.957 20 N -0.880 5.880 21 Si 0.878 3.122 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.270 1.270 25 C -0.140 4.140 26 C 0.067 3.933 27 O -0.386 6.386 28 C 0.068 3.932 29 C -0.139 4.139 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.399 0.601 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.347 0.653 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.370 0.630 42 H 0.274 0.726 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.582 -8.414 19.994 22.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.136 4.136 3 H 0.130 0.870 4 C -0.188 4.188 5 C -0.217 4.217 6 H 0.143 0.857 7 C 0.332 3.668 8 O -0.411 6.411 9 N -0.378 5.378 10 C -0.035 4.035 11 C 0.010 3.990 12 N -0.280 5.280 13 C -0.091 4.091 14 C 0.236 3.764 15 O -0.446 6.446 16 N -0.229 5.229 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.160 4.160 20 N -0.520 5.520 21 Si 0.704 3.296 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.195 1.195 25 C -0.178 4.178 26 C -0.010 4.010 27 O -0.305 6.305 28 C -0.008 4.008 29 C -0.177 4.177 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.234 0.766 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.167 0.833 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.202 0.798 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.105 0.895 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.585 -9.045 19.375 22.100 hybrid contribution -1.204 1.468 0.301 1.922 sum -6.789 -7.578 19.676 22.151 Atomic orbital electron populations 1.21359 0.91476 1.01286 1.02706 1.22374 0.96608 0.93656 1.00979 0.87038 1.23068 1.03085 1.01978 0.90683 1.22302 1.02402 1.01280 0.95751 0.85748 1.19657 0.88114 0.80891 0.78131 1.90703 1.14539 1.74636 1.61218 1.45936 1.10416 1.27867 1.53570 1.22109 0.94214 0.90635 0.96520 1.21289 0.92883 0.93200 0.91599 1.60253 1.14558 1.29370 1.23845 1.21810 0.96155 0.95338 0.95772 1.19633 0.88991 0.83309 0.84450 1.90564 1.15461 1.65730 1.72871 1.42207 1.08926 1.39579 1.32144 1.19413 0.94365 1.19855 1.09765 0.86270 1.25027 0.98227 0.96673 0.96074 1.69618 1.35232 1.27650 1.19495 0.86701 0.85118 0.79001 0.78764 1.19632 1.20088 1.19514 1.22260 0.99292 0.98558 0.97699 1.22506 0.91693 0.92500 0.94329 1.87864 1.54370 1.34232 1.54049 1.22466 0.92992 0.94276 0.91109 1.22176 0.98021 0.97575 0.99930 0.91888 0.93267 0.91307 0.88356 0.87814 0.76618 0.90669 0.91279 0.83270 0.89273 0.93333 0.79758 0.91577 0.91068 0.90552 0.89616 0.91306 0.89504 0.91116 0.90748 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 8.43 37.15 0.31 -0.88 16 2 C -0.12 -1.11 6.41 -90.63 -0.58 -1.69 16 3 H 0.11 0.90 8.14 -51.92 -0.42 0.48 16 4 C -0.15 -1.20 9.88 -26.74 -0.26 -1.46 16 5 C -0.20 -1.90 6.19 -91.78 -0.57 -2.47 16 6 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 7 C 0.55 6.51 7.59 -10.99 -0.08 6.42 16 8 O -0.53 -7.95 13.10 5.56 0.07 -7.88 16 9 N -0.73 -7.38 5.06 -60.30 -0.30 -7.69 16 10 C 0.09 0.95 3.87 -4.04 -0.02 0.94 16 11 C 0.10 1.05 0.30 -131.42 -0.04 1.01 16 12 N -0.65 -8.47 4.34 -101.03 -0.44 -8.91 16 13 C 0.04 0.64 5.30 -4.98 -0.03 0.62 16 14 C 0.45 9.75 7.83 -10.99 -0.09 9.67 16 15 O -0.56 -14.37 15.87 5.55 0.09 -14.28 16 16 N -0.59 -13.76 5.09 -10.97 -0.06 -13.82 16 17 C -0.31 -8.51 10.16 -14.93 -0.15 -8.67 16 18 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 19 C 0.04 1.17 5.50 -17.47 -0.10 1.08 16 20 N -0.88 -25.52 13.96 55.50 0.77 -24.75 16 21 Si 0.88 19.41 27.74 -169.99 -4.71 14.69 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 25 C -0.14 -1.26 4.86 -26.50 -0.13 -1.38 16 26 C 0.07 0.70 6.68 37.30 0.25 0.95 16 27 O -0.39 -4.78 10.77 -35.23 -0.38 -5.16 16 28 C 0.07 0.79 6.68 37.21 0.25 1.03 16 29 C -0.14 -1.41 4.78 -26.59 -0.13 -1.54 16 30 H 0.06 0.73 7.01 -51.93 -0.36 0.37 16 31 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.07 0.87 7.26 -51.93 -0.38 0.50 16 33 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.40 3.48 6.45 -40.82 -0.26 3.22 16 36 H 0.08 0.91 6.76 -51.93 -0.35 0.56 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.35 4.59 7.24 -39.29 -0.28 4.31 16 39 H 0.09 1.26 6.22 -51.93 -0.32 0.93 16 40 H 0.05 0.72 6.54 -51.93 -0.34 0.38 16 41 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.07 0.55 7.20 -51.93 -0.37 0.18 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 47 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.07 0.97 7.75 -51.93 -0.40 0.57 16 49 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.08 0.79 6.34 -51.93 -0.33 0.46 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -33.22 390.41 -8.26 -41.47 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -7.82 Total: 16.81 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -1.36 Total: 3.63 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.03 Total: -55.16 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.22 Total: -27.32 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.22 -8.26 -41.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484178860.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.838 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds