Wall clock time and date at job start Tue Mar 31 2020 23:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09010 * 115.54946 * 2 1 4 4 C 1.52992 * 117.52253 * 145.69869 * 2 1 3 5 5 C 1.52997 * 60.00268 * 107.48066 * 4 2 1 6 6 H 1.09001 * 117.51441 * 107.48061 * 5 4 2 7 7 C 1.50691 * 117.50443 * 252.51433 * 5 4 2 8 8 O 1.21277 * 120.00157 * 68.61869 * 7 5 4 9 9 N 1.34773 * 120.00327 * 248.62124 * 7 5 4 10 10 C 1.46499 * 120.00590 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.47298 * 174.56132 * 10 9 7 12 12 N 1.46896 * 109.54551 * 305.47562 * 11 10 9 13 13 C 1.46902 * 111.00379 * 305.29541 * 12 11 10 14 14 C 1.50696 * 109.47643 * 184.18307 * 13 12 11 15 15 O 1.21294 * 119.99780 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00047 * 179.97438 * 14 13 12 17 17 C 1.37098 * 119.99842 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00255 * 0.02562 * 17 16 14 19 19 C 1.38946 * 120.00063 * 179.97438 * 17 16 14 20 20 N 1.31416 * 120.00252 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 120.00020 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46891 * 89.99670 * 21 19 17 23 23 H 1.48491 * 109.47085 * 209.99899 * 21 19 17 24 24 H 1.48499 * 109.46992 * 330.00229 * 21 19 17 25 25 C 1.53173 * 109.54377 * 65.65436 * 11 10 9 26 26 C 1.53279 * 109.06545 * 176.85014 * 25 11 10 27 27 O 1.42907 * 109.46167 * 302.44754 * 26 25 11 28 28 C 1.42907 * 114.09750 * 61.15676 * 27 26 25 29 29 C 1.53092 * 109.41118 * 298.84101 * 28 27 26 30 30 H 1.08995 * 109.47113 * 205.67116 * 1 2 3 31 31 H 1.09009 * 109.47369 * 325.66794 * 1 2 3 32 32 H 1.09000 * 109.47567 * 85.66943 * 1 2 3 33 33 H 1.09001 * 117.49792 * 359.97438 * 4 2 1 34 34 H 1.08997 * 117.50628 * 214.97027 * 4 2 1 35 35 H 0.97003 * 119.99744 * 359.97438 * 9 7 5 36 36 H 1.09001 * 109.47033 * 54.56117 * 10 9 7 37 37 H 1.08996 * 109.47032 * 294.56370 * 10 9 7 38 38 H 1.00899 * 111.00223 * 69.24426 * 12 11 10 39 39 H 1.09003 * 109.46700 * 304.18298 * 13 12 11 40 40 H 1.09006 * 109.47132 * 64.17596 * 13 12 11 41 41 H 0.96999 * 120.00119 * 0.02562 * 16 14 13 42 42 H 0.96998 * 120.00088 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.52418 * 296.84426 * 25 11 10 44 44 H 1.09006 * 109.52214 * 57.03053 * 25 11 10 45 45 H 1.09000 * 109.45955 * 182.44966 * 26 25 11 46 46 H 1.09007 * 109.46754 * 62.44895 * 26 25 11 47 47 H 1.08998 * 109.47806 * 178.86113 * 28 27 26 48 48 H 1.08998 * 109.49041 * 58.83018 * 28 27 26 49 49 H 1.08996 * 109.52577 * 297.70131 * 29 28 27 50 50 H 1.08997 * 109.57128 * 177.54459 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2369 -1.1208 0.7646 5 6 2.2364 -1.1207 -0.7654 6 1 3.1711 -0.8745 -1.2692 7 6 1.3720 -2.1404 -1.4611 8 8 0.1639 -2.0533 -1.4011 9 7 1.9415 -3.1491 -2.1499 10 6 1.1012 -4.1407 -2.8258 11 6 1.9849 -5.0887 -3.6390 12 7 2.8332 -4.3093 -4.5505 13 6 2.0225 -3.4208 -5.3938 14 6 2.9141 -2.7154 -6.3830 15 8 4.1076 -2.9313 -6.3849 16 7 2.3852 -1.8448 -7.2654 17 6 3.1965 -1.2027 -8.1649 18 1 4.2593 -1.3949 -8.1667 19 6 2.6513 -0.3055 -9.0751 20 7 3.4288 0.3096 -9.9377 21 14 0.8129 0.0265 -9.0725 22 1 0.5154 1.1573 -8.1572 23 1 0.3706 0.3726 -10.4471 24 1 0.0915 -1.1867 -8.6111 25 6 2.8674 -5.9063 -2.6909 26 6 3.6902 -6.9067 -3.5106 27 8 2.8099 -7.7426 -4.2645 28 6 1.9934 -7.0359 -5.2005 29 6 1.1024 -6.0425 -4.4501 30 1 -0.3633 -0.9262 0.4452 31 1 -0.3634 0.8487 0.5796 32 1 -0.3634 0.0776 -1.0247 33 1 1.6120 -1.8584 1.2683 34 1 3.1721 -0.8749 1.2676 35 1 2.9078 -3.2186 -2.1982 36 1 0.4041 -3.6326 -3.4921 37 1 0.5436 -4.7112 -2.0831 38 1 3.5288 -3.7870 -4.0392 39 1 1.2781 -4.0089 -5.9306 40 1 1.5202 -2.6836 -4.7672 41 1 1.4308 -1.6719 -7.2636 42 1 3.0482 0.9363 -10.5728 43 1 3.5369 -5.2381 -2.1493 44 1 2.2388 -6.4462 -1.9827 45 1 4.2886 -7.5217 -2.8384 46 1 4.3482 -6.3651 -4.1903 47 1 1.3693 -7.7440 -5.7457 48 1 2.6288 -6.4959 -5.9025 49 1 0.4381 -6.5850 -3.7775 50 1 0.5099 -5.4714 -5.1648 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484178860.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:37 Heat of formation + Delta-G solvation = -110.188082 kcal Electronic energy + Delta-G solvation = -31135.772165 eV Core-core repulsion = 26969.917361 eV Total energy + Delta-G solvation = -4165.854805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.70255 -40.73309 -39.99874 -38.07746 -37.20383 -36.02316 -34.85210 -33.76970 -32.75496 -32.02517 -29.78962 -28.58866 -28.22267 -25.89200 -25.21310 -24.35389 -23.18351 -21.98697 -21.30552 -21.04686 -20.34168 -20.09244 -18.26708 -17.98175 -17.33143 -17.12525 -16.82888 -16.74872 -16.60472 -16.25236 -16.07879 -15.77094 -15.62955 -15.29316 -15.06146 -14.85769 -14.55950 -14.23992 -14.08245 -13.98695 -13.70000 -13.57935 -13.37428 -13.34467 -13.17973 -13.05530 -12.95361 -12.72544 -12.44097 -12.39073 -12.15796 -12.01288 -11.53626 -11.48603 -11.22819 -11.20352 -11.07662 -10.63163 -10.51583 -10.43806 -10.26099 -10.15116 -9.39588 -8.43271 -6.03334 1.27143 1.31507 1.40038 1.47070 1.93072 2.06167 2.19374 2.62705 2.82749 3.07762 3.13261 3.28651 3.55105 3.57680 3.66250 3.79445 3.86117 3.92010 4.08249 4.13976 4.16767 4.31752 4.36602 4.44584 4.45377 4.50881 4.55490 4.63465 4.72738 4.77423 4.79174 4.86733 4.88132 4.91332 4.94992 5.03793 5.08970 5.15377 5.16055 5.26520 5.33025 5.50115 5.52301 5.84299 5.96888 6.27978 6.36635 6.43140 6.57127 6.86403 7.19040 7.37882 7.93433 8.74159 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007060 B = 0.004348 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3964.847805 B = 6437.719596 C = 9314.377638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.130 4.130 3 H 0.126 0.874 4 C -0.129 4.129 5 C -0.208 4.208 6 H 0.136 0.864 7 C 0.539 3.461 8 O -0.568 6.568 9 N -0.718 5.718 10 C 0.097 3.903 11 C 0.111 3.889 12 N -0.656 5.656 13 C 0.061 3.939 14 C 0.453 3.547 15 O -0.606 6.606 16 N -0.593 5.593 17 C -0.325 4.325 18 H 0.059 0.941 19 C -0.010 4.010 20 N -0.932 5.932 21 Si 0.957 3.043 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.235 1.235 25 C -0.133 4.133 26 C 0.064 3.936 27 O -0.400 6.400 28 C 0.068 3.932 29 C -0.137 4.137 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.094 0.906 34 H 0.129 0.871 35 H 0.407 0.593 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.346 0.654 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.386 0.614 42 H 0.279 0.721 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.046 0.954 47 H 0.100 0.900 48 H 0.043 0.957 49 H 0.092 0.908 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.738 -9.068 22.263 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.148 4.148 3 H 0.144 0.856 4 C -0.166 4.166 5 C -0.229 4.229 6 H 0.154 0.846 7 C 0.327 3.673 8 O -0.448 6.448 9 N -0.370 5.370 10 C -0.029 4.029 11 C 0.019 3.981 12 N -0.288 5.288 13 C -0.071 4.071 14 C 0.241 3.759 15 O -0.490 6.490 16 N -0.235 5.235 17 C -0.454 4.454 18 H 0.077 0.923 19 C -0.209 4.209 20 N -0.573 5.573 21 Si 0.778 3.222 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.158 1.158 25 C -0.171 4.171 26 C -0.013 4.013 27 O -0.319 6.319 28 C -0.008 4.008 29 C -0.176 4.176 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.147 0.853 35 H 0.243 0.757 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.166 0.834 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.221 0.779 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.122 0.878 46 H 0.065 0.935 47 H 0.118 0.882 48 H 0.061 0.939 49 H 0.110 0.890 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.726 -9.735 21.667 24.978 hybrid contribution -0.383 1.587 -0.371 1.674 sum -8.109 -8.148 21.296 24.200 Atomic orbital electron populations 1.21258 0.92725 1.01198 1.01139 1.22477 0.95773 0.94696 1.01871 0.85588 1.23141 1.03618 1.00528 0.89345 1.22368 1.02490 1.01049 0.96980 0.84623 1.20076 0.87944 0.81296 0.77986 1.90693 1.16012 1.75530 1.62538 1.45897 1.10831 1.27396 1.52883 1.22027 0.93969 0.90457 0.96420 1.21302 0.92727 0.92799 0.91262 1.60228 1.14944 1.28908 1.24768 1.21619 0.95015 0.95729 0.94761 1.20822 0.89210 0.81859 0.84052 1.90547 1.17971 1.66616 1.73864 1.42062 1.09260 1.40077 1.32057 1.18995 0.92619 1.21740 1.12067 0.92279 1.26002 1.04575 0.95575 0.94792 1.69789 1.38293 1.28604 1.20596 0.85472 0.77303 0.80346 0.79114 1.18491 1.19841 1.15837 1.22231 0.99295 0.98246 0.97298 1.22593 0.91614 0.92912 0.94179 1.87849 1.54710 1.35065 1.54286 1.22463 0.92801 0.94708 0.90867 1.22192 0.97868 0.97300 1.00195 0.93214 0.91809 0.93846 0.88729 0.85329 0.75672 0.91901 0.90569 0.83381 0.87145 0.91822 0.77877 0.91161 0.89585 0.89147 0.87826 0.93516 0.88176 0.93897 0.88978 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 8.43 71.98 0.61 -1.58 16 2 C -0.13 -2.20 6.41 -10.80 -0.07 -2.27 16 3 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 4 C -0.13 -1.72 9.88 30.59 0.30 -1.41 16 5 C -0.21 -3.63 6.19 -11.54 -0.07 -3.70 16 6 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 7 C 0.54 12.03 7.59 87.65 0.67 12.69 16 8 O -0.57 -16.41 13.10 -3.02 -0.04 -16.45 16 9 N -0.72 -13.09 5.06 -463.09 -2.34 -15.43 16 10 C 0.10 1.79 3.87 86.38 0.33 2.12 16 11 C 0.11 2.00 0.30 3.65 0.00 2.00 16 12 N -0.66 -16.28 4.34 -473.56 -2.06 -18.34 16 13 C 0.06 1.78 5.30 85.56 0.45 2.23 16 14 C 0.45 19.65 7.83 87.66 0.69 20.34 16 15 O -0.61 -31.88 15.87 -3.07 -0.05 -31.93 16 16 N -0.59 -27.66 5.09 -306.99 -1.56 -29.22 16 17 C -0.32 -18.82 10.16 84.04 0.85 -17.96 16 18 H 0.06 4.06 7.39 -2.91 -0.02 4.03 16 19 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 20 N -0.93 -55.91 13.96 21.66 0.30 -55.61 16 21 Si 0.96 39.25 27.74 68.60 1.90 41.16 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 24 H -0.23 -8.24 6.52 99.48 0.65 -7.59 16 25 C -0.13 -2.03 4.86 30.75 0.15 -1.88 16 26 C 0.06 1.23 6.68 72.08 0.48 1.71 16 27 O -0.40 -9.28 10.77 -148.98 -1.60 -10.88 16 28 C 0.07 1.47 6.68 72.01 0.48 1.95 16 29 C -0.14 -2.44 4.78 30.69 0.15 -2.30 16 30 H 0.05 1.13 7.01 -2.39 -0.02 1.12 16 31 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.04 1.10 7.26 -2.39 -0.02 1.08 16 33 H 0.09 1.36 8.05 -2.39 -0.02 1.34 16 34 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.41 6.18 6.45 -92.71 -0.60 5.58 16 36 H 0.06 1.36 6.76 -2.39 -0.02 1.34 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.35 8.77 7.24 -89.69 -0.65 8.12 16 39 H 0.11 2.82 6.22 -2.39 -0.01 2.80 16 40 H 0.06 1.72 6.54 -2.38 -0.02 1.70 16 41 H 0.39 15.34 5.76 -92.71 -0.53 14.80 16 42 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.09 1.08 7.20 -2.39 -0.02 1.06 16 44 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 45 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.05 1.11 7.75 -2.38 -0.02 1.10 16 47 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.04 1.16 7.75 -2.39 -0.02 1.14 16 49 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.08 1.40 6.34 -2.39 -0.02 1.38 16 Total: -1.00 -77.25 390.41 -0.82 -78.07 By element: Atomic # 1 Polarization: 47.67 SS G_CDS: -0.86 Total: 46.81 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 5.49 Total: 11.83 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -5.66 Total: -118.61 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -1.69 Total: -59.26 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 1.90 Total: 41.16 kcal Total: -77.25 -0.82 -78.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484178860.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.118 kcal (2) G-P(sol) polarization free energy of solvation -77.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds