Wall clock time and date at job start Tue Mar 31 2020 23:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 115.56083 * 2 1 4 4 C 1.53004 * 117.50179 * 145.69398 * 2 1 3 5 5 C 1.52995 * 60.03275 * 107.50136 * 4 2 1 6 6 H 1.09003 * 117.49871 * 252.47519 * 5 4 2 7 7 C 1.50703 * 117.49790 * 107.47857 * 5 4 2 8 8 O 1.21281 * 120.00200 * 291.38625 * 7 5 4 9 9 N 1.34778 * 119.99765 * 111.39114 * 7 5 4 10 10 C 1.46495 * 119.99922 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.47475 * 177.08096 * 10 9 7 12 12 N 1.46900 * 109.54188 * 54.68666 * 11 10 9 13 13 C 1.46906 * 110.99973 * 54.64352 * 12 11 10 14 14 C 1.50698 * 109.47201 * 176.98728 * 13 12 11 15 15 O 1.21289 * 119.99990 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99929 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00083 * 179.97438 * 16 14 13 18 18 H 1.07998 * 119.99459 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99706 * 179.97438 * 17 16 14 20 20 N 1.31416 * 119.99775 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00359 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47237 * 89.99834 * 21 19 17 23 23 H 1.48503 * 109.47077 * 209.99958 * 21 19 17 24 24 H 1.48503 * 109.47037 * 329.99757 * 21 19 17 25 25 C 1.53183 * 109.54564 * 294.42545 * 11 10 9 26 26 C 1.53088 * 109.16539 * 183.14685 * 25 11 10 27 27 O 1.42910 * 109.41326 * 57.60933 * 26 25 11 28 28 C 1.42899 * 114.09626 * 298.83970 * 27 26 25 29 29 C 1.53093 * 109.41541 * 61.15915 * 28 27 26 30 30 H 1.08994 * 109.47116 * 325.69864 * 1 2 3 31 31 H 1.09007 * 109.47100 * 85.70426 * 1 2 3 32 32 H 1.09004 * 109.46972 * 205.69807 * 1 2 3 33 33 H 1.08998 * 117.49825 * 359.97438 * 4 2 1 34 34 H 1.09000 * 117.49695 * 215.00782 * 4 2 1 35 35 H 0.97004 * 120.00472 * 359.97438 * 9 7 5 36 36 H 1.09002 * 109.47682 * 297.08392 * 10 9 7 37 37 H 1.08999 * 109.47265 * 57.08376 * 10 9 7 38 38 H 1.00896 * 111.00279 * 290.68785 * 12 11 10 39 39 H 1.09001 * 109.46970 * 296.98288 * 13 12 11 40 40 H 1.09000 * 109.46884 * 56.98236 * 13 12 11 41 41 H 0.97002 * 119.99543 * 359.97438 * 16 14 13 42 42 H 0.96994 * 120.00228 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.51587 * 303.05682 * 25 11 10 44 44 H 1.09001 * 109.52066 * 63.23926 * 25 11 10 45 45 H 1.08992 * 109.48475 * 297.62621 * 26 25 11 46 46 H 1.09002 * 109.47727 * 177.58474 * 26 25 11 47 47 H 1.08998 * 109.48427 * 301.17589 * 28 27 26 48 48 H 1.08996 * 109.48968 * 181.14530 * 28 27 26 49 49 H 1.09001 * 109.52469 * 182.48590 * 29 28 27 50 50 H 1.08995 * 109.52352 * 62.30026 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1211 0.7649 5 6 2.2371 -1.1215 -0.7650 6 1 1.6127 -1.8596 -1.2684 7 6 3.5302 -0.7814 -1.4604 8 8 3.9724 0.3463 -1.4008 9 7 4.1951 -1.7305 -2.1486 10 6 5.4517 -1.3998 -2.8250 11 6 6.0338 -2.6616 -3.4652 12 7 5.0309 -3.2723 -4.3479 13 6 4.5404 -2.3033 -5.3372 14 6 3.5710 -2.9837 -6.2690 15 8 3.3143 -4.1602 -6.1236 16 7 2.9900 -2.2852 -7.2645 17 6 2.1085 -2.9043 -8.1126 18 1 1.8794 -3.9516 -7.9826 19 6 1.5092 -2.1839 -9.1385 20 7 0.6639 -2.7772 -9.9511 21 14 1.9051 -0.3722 -9.3628 22 1 3.0672 -0.2288 -10.2761 23 1 0.7292 0.3231 -9.9450 24 1 2.2337 0.2294 -8.0454 25 6 6.4286 -3.6567 -2.3696 26 6 7.0816 -4.8818 -3.0149 27 8 8.2138 -4.4677 -3.7823 28 6 7.8986 -3.5734 -4.8513 29 6 7.2784 -2.2957 -4.2798 30 1 -0.3633 0.8489 0.5791 31 1 -0.3634 0.0770 -1.0248 32 1 -0.3633 -0.9261 0.4456 33 1 1.6113 -1.8584 1.2685 34 1 3.1713 -0.8751 1.2686 35 1 3.8416 -2.6326 -2.1960 36 1 5.2633 -0.6542 -3.5976 37 1 6.1606 -1.0003 -2.0998 38 1 4.2683 -3.6614 -3.8140 39 1 4.0370 -1.4838 -4.8243 40 1 5.3811 -1.9118 -5.9099 41 1 3.1957 -1.3444 -7.3809 42 1 0.2458 -2.2745 -10.6676 43 1 7.1348 -3.1849 -1.6864 44 1 5.5393 -3.9651 -1.8200 45 1 6.3617 -5.3763 -3.6670 46 1 7.4033 -5.5743 -2.2370 47 1 7.1893 -4.0507 -5.5275 48 1 8.8086 -3.3232 -5.3965 49 1 6.9968 -1.6307 -5.0962 50 1 8.0018 -1.7964 -3.6352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484178861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:42 Heat of formation + Delta-G solvation = -88.779964 kcal Electronic energy + Delta-G solvation = -30904.832139 eV Core-core repulsion = 26739.905660 eV Total energy + Delta-G solvation = -4164.926479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75445 -39.72354 -38.32833 -37.27923 -36.40425 -34.15455 -33.76915 -31.87642 -31.55612 -31.17527 -29.22443 -27.65770 -26.81176 -24.36175 -24.29137 -23.34781 -22.33660 -21.10295 -20.27144 -19.47075 -19.23170 -18.42956 -17.82907 -16.59506 -16.35626 -15.97851 -15.78492 -15.62724 -15.37822 -14.99667 -14.89061 -14.79506 -14.44459 -14.17133 -13.98440 -13.50463 -13.40032 -13.19169 -12.99525 -12.90860 -12.59154 -12.43095 -12.39867 -12.33478 -12.28797 -11.92357 -11.71636 -11.63953 -11.34589 -11.18241 -10.69296 -10.64580 -10.61888 -10.37896 -10.34956 -10.02023 -9.99255 -9.62241 -9.58619 -9.30344 -8.70294 -8.28144 -8.21931 -6.35487 -3.87101 2.30071 2.85486 2.99990 3.04100 3.12677 3.53209 3.67135 3.85276 3.94375 4.06693 4.31886 4.38570 4.44557 4.47052 4.52036 4.66442 4.81216 4.89921 4.95745 5.04273 5.16352 5.25456 5.27404 5.31478 5.35127 5.41680 5.42881 5.46485 5.50921 5.55382 5.60104 5.63922 5.65666 5.72288 5.77558 5.79257 5.86406 5.92253 5.98363 6.03314 6.13802 6.17402 6.89250 7.22709 7.23849 7.33182 7.52925 8.01820 8.09264 8.54493 8.90127 9.37646 9.76837 10.77477 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006808 B = 0.004269 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4111.596076 B = 6557.779577 C = 9584.220664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.119 4.119 3 H 0.116 0.884 4 C -0.148 4.148 5 C -0.194 4.194 6 H 0.126 0.874 7 C 0.546 3.454 8 O -0.542 6.542 9 N -0.724 5.724 10 C 0.090 3.910 11 C 0.103 3.897 12 N -0.648 5.648 13 C 0.041 3.959 14 C 0.450 3.550 15 O -0.564 6.564 16 N -0.589 5.589 17 C -0.306 4.306 18 H 0.120 0.880 19 C 0.043 3.957 20 N -0.880 5.880 21 Si 0.878 3.122 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.270 1.270 25 C -0.140 4.140 26 C 0.067 3.933 27 O -0.387 6.387 28 C 0.068 3.932 29 C -0.139 4.139 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.399 0.601 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.347 0.653 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.370 0.630 42 H 0.274 0.726 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.070 0.930 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.509 3.912 19.698 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.138 4.138 3 H 0.134 0.866 4 C -0.186 4.186 5 C -0.215 4.215 6 H 0.144 0.856 7 C 0.333 3.667 8 O -0.419 6.419 9 N -0.376 5.376 10 C -0.036 4.036 11 C 0.011 3.989 12 N -0.281 5.281 13 C -0.092 4.092 14 C 0.236 3.764 15 O -0.446 6.446 16 N -0.228 5.228 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.160 4.160 20 N -0.520 5.520 21 Si 0.704 3.296 22 H -0.195 1.195 23 H -0.201 1.201 24 H -0.196 1.196 25 C -0.178 4.178 26 C -0.010 4.010 27 O -0.305 6.305 28 C -0.008 4.008 29 C -0.177 4.177 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.235 0.765 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.167 0.833 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.104 0.896 47 H 0.089 0.911 48 H 0.105 0.895 49 H 0.096 0.904 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.154 3.585 19.237 21.604 hybrid contribution -0.889 1.796 -0.013 2.004 sum 8.265 5.381 19.224 21.606 Atomic orbital electron populations 1.21418 0.92075 1.02229 1.02524 1.22380 0.95367 0.94933 1.01127 0.86572 1.23097 1.03086 1.01694 0.90686 1.22341 0.97724 1.05715 0.95767 0.85650 1.19659 0.84544 0.84515 0.78019 1.90691 1.68629 1.20980 1.61562 1.45889 1.24641 1.13597 1.53493 1.22118 0.85695 0.98604 0.97140 1.21288 0.93397 0.91860 0.92386 1.60259 1.17359 1.33453 1.17029 1.21827 0.98541 0.94021 0.94786 1.19628 0.85041 0.87869 0.83882 1.90565 1.64949 1.15729 1.73401 1.42208 1.41194 1.10876 1.28541 1.19415 1.18447 0.98421 1.07141 0.86260 1.25027 0.96487 0.98379 0.96105 1.69617 1.28224 1.36698 1.17425 0.86700 0.79142 0.85000 0.78728 1.19529 1.20122 1.19575 1.22222 1.01326 0.97256 0.96974 1.22477 0.88878 0.94806 0.94862 1.87864 1.32530 1.64745 1.45391 1.22465 1.00253 0.88898 0.89226 1.22179 0.95812 0.99425 1.00297 0.91665 0.91680 0.92253 0.87702 0.88401 0.76518 0.90963 0.90899 0.83265 0.93297 0.89199 0.79748 0.91567 0.90561 0.91026 0.91317 0.89604 0.91129 0.89493 0.90413 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 10.19 37.16 0.38 -0.60 16 2 C -0.12 -1.12 5.92 -90.58 -0.54 -1.66 16 3 H 0.12 1.26 7.67 -51.93 -0.40 0.86 16 4 C -0.15 -1.19 9.88 -26.73 -0.26 -1.45 16 5 C -0.19 -1.91 5.91 -91.73 -0.54 -2.45 16 6 H 0.13 1.11 8.14 -51.93 -0.42 0.68 16 7 C 0.55 6.73 7.61 -10.98 -0.08 6.65 16 8 O -0.54 -8.60 16.26 5.56 0.09 -8.51 16 9 N -0.72 -7.61 5.06 -60.30 -0.31 -7.92 16 10 C 0.09 0.97 3.86 -4.04 -0.02 0.95 16 11 C 0.10 1.06 0.30 -131.42 -0.04 1.02 16 12 N -0.65 -8.44 4.38 -101.03 -0.44 -8.88 16 13 C 0.04 0.62 5.32 -4.97 -0.03 0.59 16 14 C 0.45 9.66 7.83 -10.98 -0.09 9.57 16 15 O -0.56 -14.27 15.84 5.55 0.09 -14.18 16 16 N -0.59 -13.64 5.09 -10.96 -0.06 -13.70 16 17 C -0.31 -8.48 10.16 -14.93 -0.15 -8.63 16 18 H 0.12 3.78 7.39 -52.49 -0.39 3.40 16 19 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 20 N -0.88 -25.42 13.96 55.50 0.77 -24.64 16 21 Si 0.88 19.29 27.74 -169.99 -4.71 14.58 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 25 C -0.14 -1.28 4.84 -26.59 -0.13 -1.41 16 26 C 0.07 0.70 6.68 37.20 0.25 0.95 16 27 O -0.39 -4.78 10.77 -35.23 -0.38 -5.16 16 28 C 0.07 0.78 6.68 37.21 0.25 1.03 16 29 C -0.14 -1.41 4.78 -26.59 -0.13 -1.54 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 33 H 0.10 0.65 8.05 -51.93 -0.42 0.23 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.40 3.65 6.48 -40.82 -0.26 3.38 16 36 H 0.07 0.88 6.73 -51.93 -0.35 0.53 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.35 4.57 7.06 -39.29 -0.28 4.30 16 39 H 0.05 0.71 6.47 -51.93 -0.34 0.38 16 40 H 0.09 1.24 6.27 -51.93 -0.33 0.92 16 41 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.58 7.38 -51.93 -0.38 0.19 16 45 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.95 7.75 -51.93 -0.40 0.55 16 48 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 49 H 0.08 0.78 6.35 -51.93 -0.33 0.45 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -33.56 395.90 -8.09 -41.66 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -7.89 Total: 16.67 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.22 Total: 4.12 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.03 Total: -55.14 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.20 Total: -27.85 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.56 -8.09 -41.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484178861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.122 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds