Wall clock time and date at job start Tue Mar 31 2020 23:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.05647 * 2 1 4 4 C 1.54267 * 110.02852 * 238.58214 * 2 1 3 5 5 C 1.54890 * 104.19322 * 217.10499 * 4 2 1 6 6 C 1.54888 * 102.75253 * 37.94173 * 5 4 2 7 7 H 1.08999 * 110.48272 * 80.86496 * 6 5 4 8 8 C 1.50690 * 110.48953 * 203.38048 * 6 5 4 9 9 O 1.21290 * 119.99960 * 118.54773 * 8 6 5 10 10 N 1.34776 * 120.00317 * 298.54342 * 8 6 5 11 11 C 1.46498 * 120.00195 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.46930 * 180.02562 * 11 10 8 13 13 O 1.42906 * 113.38301 * 313.07738 * 12 11 10 14 14 C 1.53517 * 114.17059 * 180.02562 * 12 11 10 15 15 N 1.47479 * 87.99753 * 220.35597 * 14 12 11 16 16 C 1.46897 * 110.99965 * 138.66774 * 15 14 12 17 17 C 1.50701 * 109.47156 * 189.99845 * 16 15 14 18 18 O 1.21293 * 120.00119 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99809 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99695 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00276 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99939 * 180.02562 * 20 19 17 23 23 N 1.31403 * 119.99836 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00068 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47004 * 90.00014 * 24 22 20 26 26 H 1.48502 * 109.47225 * 210.00391 * 24 22 20 27 27 H 1.48502 * 109.46908 * 330.00141 * 24 22 20 28 28 C 1.47487 * 87.83637 * 26.97912 * 15 14 12 29 29 C 1.53868 * 110.03146 * 121.41577 * 2 1 3 30 30 H 1.09001 * 109.47062 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47313 * 299.96353 * 1 2 3 32 32 H 1.08997 * 109.47620 * 59.96553 * 1 2 3 33 33 H 1.09004 * 110.48375 * 98.42954 * 4 2 1 34 34 H 1.08992 * 110.49045 * 335.77824 * 4 2 1 35 35 H 1.09005 * 110.75452 * 279.62802 * 5 4 2 36 36 H 1.08994 * 110.76077 * 156.26459 * 5 4 2 37 37 H 0.96996 * 119.99548 * 0.02562 * 10 8 6 38 38 H 1.09001 * 109.47428 * 60.00808 * 11 10 8 39 39 H 1.08999 * 109.47039 * 300.00138 * 11 10 8 40 40 H 0.96696 * 113.99578 * 46.92742 * 13 12 11 41 41 H 1.09002 * 113.47888 * 105.55955 * 14 12 11 42 42 H 1.09003 * 113.47419 * 335.15289 * 14 12 11 43 43 H 1.08999 * 109.47564 * 310.00354 * 16 15 14 44 44 H 1.09004 * 109.47077 * 70.00202 * 16 15 14 45 45 H 0.96999 * 120.00293 * 0.02562 * 19 17 16 46 46 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 47 47 H 1.09004 * 113.47787 * 87.75324 * 28 15 14 48 48 H 1.09001 * 113.47615 * 218.16496 * 28 15 14 49 49 H 1.08999 * 110.03575 * 359.97438 * 29 2 1 50 50 H 1.09004 * 110.03428 * 238.56991 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 3.3136 -1.5008 -0.7191 6 6 2.8875 -1.9407 0.7035 7 1 2.2791 -2.8439 0.6573 8 6 4.0989 -2.1660 1.5709 9 8 4.2626 -1.4975 2.5697 10 7 5.0006 -3.1105 1.2371 11 6 6.1786 -3.3292 2.0800 12 6 7.0336 -4.4478 1.4812 13 8 6.2766 -5.5987 1.1011 14 6 8.3024 -4.7676 2.2841 15 7 9.0165 -4.9077 1.0013 16 6 10.3497 -4.2949 1.0713 17 6 10.9491 -4.2371 -0.3102 18 8 10.3267 -4.6641 -1.2597 19 7 12.1764 -3.7101 -0.4907 20 6 12.7215 -3.6572 -1.7476 21 1 12.1673 -4.0374 -2.5930 22 6 13.9870 -3.1143 -1.9337 23 7 14.6614 -2.6522 -0.9050 24 14 14.7294 -3.0415 -3.6463 25 1 14.3556 -1.7584 -4.2937 26 1 16.2083 -3.1345 -3.5491 27 1 14.2145 -4.1738 -4.4575 28 6 8.0356 -3.9740 0.4173 29 6 2.0571 -0.7535 1.2337 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8903 32 1 -0.3634 0.5143 -0.8896 33 1 2.3296 -0.0536 -2.0255 34 1 1.3143 -1.4661 -1.5966 35 1 4.1709 -0.8291 -0.6752 36 1 3.5325 -2.3678 -1.3422 37 1 4.8699 -3.6449 0.4382 38 1 5.8601 -3.6124 3.0832 39 1 6.7648 -2.4116 2.1304 40 1 5.4779 -5.3947 0.5957 41 1 8.2364 -5.6979 2.8483 42 1 8.6557 -3.9322 2.8887 43 1 10.2649 -3.2852 1.4730 44 1 10.9903 -4.8916 1.7206 45 1 12.6740 -3.3683 0.2685 46 1 15.5450 -2.2736 -1.0348 47 1 8.3169 -2.9262 0.5233 48 1 7.7442 -4.2312 -0.6011 49 1 1.2229 -1.1188 1.8327 50 1 2.6867 -0.0953 1.8325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484299193.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:44 Heat of formation + Delta-G solvation = -94.286534 kcal Electronic energy + Delta-G solvation = -29528.737375 eV Core-core repulsion = 25363.572113 eV Total energy + Delta-G solvation = -4165.165262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.95427 -40.16804 -38.13940 -37.79319 -35.96922 -34.49402 -33.90203 -31.99334 -31.30439 -30.33134 -29.29243 -27.63825 -25.99961 -25.61771 -24.78593 -22.86880 -22.01090 -20.63960 -20.08743 -19.80976 -19.20625 -18.15127 -17.84171 -16.83177 -16.43933 -15.95392 -15.90562 -15.53493 -15.36313 -15.12022 -14.89632 -14.50654 -14.21647 -13.96191 -13.79548 -13.69000 -13.58296 -13.41975 -13.09041 -13.01720 -12.54963 -12.38230 -12.12264 -12.02872 -11.87816 -11.56286 -11.50941 -11.32290 -11.21041 -11.15326 -11.09724 -11.02825 -10.78659 -10.68931 -10.40638 -10.23690 -10.02720 -9.94543 -9.52138 -9.42403 -8.75123 -8.27709 -7.98235 -6.43280 -3.84136 2.34798 2.76353 3.16330 3.25147 3.31147 3.66179 3.87321 3.98315 4.05881 4.08807 4.19829 4.21944 4.33703 4.55410 4.67467 4.83626 4.84186 4.92744 5.06174 5.07703 5.10227 5.18155 5.21718 5.22970 5.25026 5.39652 5.41763 5.45027 5.51809 5.59417 5.61968 5.65352 5.66321 5.74260 5.76948 5.79643 5.80855 5.93100 6.03808 6.07567 6.08956 6.22571 6.52778 7.07147 7.13593 7.39785 7.53531 7.90243 8.03782 8.59551 9.16218 9.52133 10.03849 10.74450 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.002102 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.336261 B =13315.245392 C =14566.166257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.119 4.119 5 C -0.117 4.117 6 C -0.114 4.114 7 H 0.102 0.898 8 C 0.522 3.478 9 O -0.537 6.537 10 N -0.729 5.729 11 C 0.105 3.895 12 C 0.087 3.913 13 O -0.517 6.517 14 C 0.012 3.988 15 N -0.430 5.430 16 C 0.006 3.994 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.269 1.269 28 C -0.008 4.008 29 C -0.107 4.107 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.398 0.602 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.369 0.631 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.093 0.907 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.073 0.927 48 H 0.096 0.904 49 H 0.068 0.932 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.231 3.318 5.627 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.091 0.909 4 C -0.157 4.157 5 C -0.155 4.155 6 C -0.135 4.135 7 H 0.120 0.880 8 C 0.309 3.691 9 O -0.413 6.413 10 N -0.382 5.382 11 C -0.020 4.020 12 C 0.044 3.956 13 O -0.322 6.322 14 C -0.118 4.118 15 N -0.152 5.152 16 C -0.126 4.126 17 C 0.229 3.771 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.137 4.137 29 C -0.145 4.145 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.233 0.767 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.217 0.783 41 H 0.115 0.885 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.112 0.888 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.114 0.886 49 H 0.087 0.913 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.671 2.619 5.738 25.464 hybrid contribution 0.467 1.122 -0.624 1.366 sum -24.204 3.740 5.114 25.020 Atomic orbital electron populations 1.21889 0.94914 1.01774 1.01641 1.21776 0.95748 0.99713 0.94528 0.90855 1.22444 0.96776 0.99079 0.97357 1.22524 0.98753 1.00729 0.93448 1.22183 0.94646 1.01127 0.95565 0.88002 1.20604 0.83905 0.78950 0.85681 1.90705 1.76663 1.46820 1.27143 1.45923 1.24124 1.39182 1.28993 1.21942 0.86567 0.98467 0.95002 1.22621 0.90362 0.85693 0.96900 1.86659 1.39972 1.29774 1.75750 1.24004 0.90465 1.02821 0.94502 1.68902 0.99570 1.38943 1.07735 1.22544 0.93155 0.98521 0.98399 1.19632 0.83502 0.84473 0.89487 1.90524 1.61858 1.51608 1.42221 1.41865 1.14461 1.53594 1.10164 1.19691 0.99475 1.37611 0.86067 0.87946 1.25269 0.96452 0.96891 0.99376 1.69608 1.13561 1.40855 1.30255 0.85854 0.77889 0.78808 0.81716 1.20428 1.20893 1.19400 1.24468 0.92279 0.96121 1.00856 1.22161 0.99083 0.95860 0.97393 0.92586 0.92682 0.92720 0.91249 0.91142 0.90737 0.90625 0.76690 0.90250 0.90043 0.78299 0.88513 0.89929 0.92621 0.88849 0.77488 0.91856 0.90872 0.88574 0.91292 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.84 37.16 0.33 -0.45 16 2 C -0.10 -0.63 3.50 -89.50 -0.31 -0.94 16 3 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 4 C -0.12 -0.68 6.36 -25.07 -0.16 -0.84 16 5 C -0.12 -0.73 6.26 -24.74 -0.15 -0.89 16 6 C -0.11 -0.80 3.25 -90.12 -0.29 -1.09 16 7 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 8 C 0.52 5.16 7.15 -10.99 -0.08 5.08 16 9 O -0.54 -7.45 15.46 5.55 0.09 -7.36 16 10 N -0.73 -6.04 5.28 -60.30 -0.32 -6.36 16 11 C 0.10 1.03 5.42 -4.04 -0.02 1.01 16 12 C 0.09 0.99 1.72 -90.02 -0.16 0.83 16 13 O -0.52 -5.98 13.55 -35.23 -0.48 -6.46 16 14 C 0.01 0.15 7.13 -7.54 -0.05 0.09 16 15 N -0.43 -7.24 6.06 -245.85 -1.49 -8.73 16 16 C 0.01 0.10 5.31 -4.98 -0.03 0.08 16 17 C 0.44 10.57 7.62 -10.98 -0.08 10.48 16 18 O -0.58 -15.80 15.34 5.55 0.09 -15.71 16 19 N -0.56 -14.36 5.29 -10.96 -0.06 -14.41 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 24 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 C -0.01 -0.12 6.14 -7.47 -0.05 -0.16 16 29 C -0.11 -0.82 5.81 -25.61 -0.15 -0.97 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.35 7.85 -51.93 -0.41 -0.06 16 35 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.40 2.34 6.94 -40.82 -0.28 2.06 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.86 7.90 -51.93 -0.41 0.45 16 40 H 0.37 2.70 7.21 45.56 0.33 3.03 16 41 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.08 0.86 7.73 -51.93 -0.40 0.46 16 43 H 0.06 0.87 7.56 -51.93 -0.39 0.48 16 44 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 45 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.07 1.05 7.49 -51.93 -0.39 0.66 16 48 H 0.10 1.59 8.13 -51.93 -0.42 1.17 16 49 H 0.07 0.49 7.67 -51.93 -0.40 0.09 16 50 H 0.08 0.82 6.90 -51.93 -0.36 0.46 16 LS Contribution 402.83 15.07 6.07 6.07 Total: -1.00 -35.10 402.83 -9.46 -44.57 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -7.61 Total: 11.97 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -1.45 Total: 4.21 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -1.14 Total: -53.33 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.31 Total: -29.54 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.10 -9.46 -44.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484299193.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.721 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds