Wall clock time and date at job start Tue Mar 31 2020 23:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.05647 * 2 1 4 4 C 1.54267 * 110.02852 * 238.58214 * 2 1 3 5 5 C 1.54890 * 104.19322 * 217.10499 * 4 2 1 6 6 C 1.54888 * 102.75253 * 37.94173 * 5 4 2 7 7 H 1.08999 * 110.48272 * 80.86496 * 6 5 4 8 8 C 1.50690 * 110.48953 * 203.38048 * 6 5 4 9 9 O 1.21290 * 119.99960 * 118.54773 * 8 6 5 10 10 N 1.34776 * 120.00317 * 298.54342 * 8 6 5 11 11 C 1.46498 * 120.00195 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.46930 * 180.02562 * 11 10 8 13 13 O 1.42906 * 113.38301 * 313.07738 * 12 11 10 14 14 C 1.53517 * 114.17059 * 180.02562 * 12 11 10 15 15 N 1.47479 * 87.99753 * 220.35597 * 14 12 11 16 16 C 1.46897 * 110.99965 * 138.66774 * 15 14 12 17 17 C 1.50701 * 109.47156 * 189.99845 * 16 15 14 18 18 O 1.21293 * 120.00119 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99809 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99695 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00276 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99939 * 180.02562 * 20 19 17 23 23 N 1.31403 * 119.99836 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00068 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47004 * 90.00014 * 24 22 20 26 26 H 1.48502 * 109.47225 * 210.00391 * 24 22 20 27 27 H 1.48502 * 109.46908 * 330.00141 * 24 22 20 28 28 C 1.47487 * 87.83637 * 26.97912 * 15 14 12 29 29 C 1.53868 * 110.03146 * 121.41577 * 2 1 3 30 30 H 1.09001 * 109.47062 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47313 * 299.96353 * 1 2 3 32 32 H 1.08997 * 109.47620 * 59.96553 * 1 2 3 33 33 H 1.09004 * 110.48375 * 98.42954 * 4 2 1 34 34 H 1.08992 * 110.49045 * 335.77824 * 4 2 1 35 35 H 1.09005 * 110.75452 * 279.62802 * 5 4 2 36 36 H 1.08994 * 110.76077 * 156.26459 * 5 4 2 37 37 H 0.96996 * 119.99548 * 0.02562 * 10 8 6 38 38 H 1.09001 * 109.47428 * 60.00808 * 11 10 8 39 39 H 1.08999 * 109.47039 * 300.00138 * 11 10 8 40 40 H 0.96696 * 113.99578 * 46.92742 * 13 12 11 41 41 H 1.09002 * 113.47888 * 105.55955 * 14 12 11 42 42 H 1.09003 * 113.47419 * 335.15289 * 14 12 11 43 43 H 1.08999 * 109.47564 * 310.00354 * 16 15 14 44 44 H 1.09004 * 109.47077 * 70.00202 * 16 15 14 45 45 H 0.96999 * 120.00293 * 0.02562 * 19 17 16 46 46 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 47 47 H 1.09004 * 113.47787 * 87.75324 * 28 15 14 48 48 H 1.09001 * 113.47615 * 218.16496 * 28 15 14 49 49 H 1.08999 * 110.03575 * 359.97438 * 29 2 1 50 50 H 1.09004 * 110.03428 * 238.56991 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 3.3136 -1.5008 -0.7191 6 6 2.8875 -1.9407 0.7035 7 1 2.2791 -2.8439 0.6573 8 6 4.0989 -2.1660 1.5709 9 8 4.2626 -1.4975 2.5697 10 7 5.0006 -3.1105 1.2371 11 6 6.1786 -3.3292 2.0800 12 6 7.0336 -4.4478 1.4812 13 8 6.2766 -5.5987 1.1011 14 6 8.3024 -4.7676 2.2841 15 7 9.0165 -4.9077 1.0013 16 6 10.3497 -4.2949 1.0713 17 6 10.9491 -4.2371 -0.3102 18 8 10.3267 -4.6641 -1.2597 19 7 12.1764 -3.7101 -0.4907 20 6 12.7215 -3.6572 -1.7476 21 1 12.1673 -4.0374 -2.5930 22 6 13.9870 -3.1143 -1.9337 23 7 14.6614 -2.6522 -0.9050 24 14 14.7294 -3.0415 -3.6463 25 1 14.3556 -1.7584 -4.2937 26 1 16.2083 -3.1345 -3.5491 27 1 14.2145 -4.1738 -4.4575 28 6 8.0356 -3.9740 0.4173 29 6 2.0571 -0.7535 1.2337 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8903 32 1 -0.3634 0.5143 -0.8896 33 1 2.3296 -0.0536 -2.0255 34 1 1.3143 -1.4661 -1.5966 35 1 4.1709 -0.8291 -0.6752 36 1 3.5325 -2.3678 -1.3422 37 1 4.8699 -3.6449 0.4382 38 1 5.8601 -3.6124 3.0832 39 1 6.7648 -2.4116 2.1304 40 1 5.4779 -5.3947 0.5957 41 1 8.2364 -5.6979 2.8483 42 1 8.6557 -3.9322 2.8887 43 1 10.2649 -3.2852 1.4730 44 1 10.9903 -4.8916 1.7206 45 1 12.6740 -3.3683 0.2685 46 1 15.5450 -2.2736 -1.0348 47 1 8.3169 -2.9262 0.5233 48 1 7.7442 -4.2312 -0.6011 49 1 1.2229 -1.1188 1.8327 50 1 2.6867 -0.0953 1.8325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484299193.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:43 Heat of formation + Delta-G solvation = -123.999584 kcal Electronic energy + Delta-G solvation = -29530.025830 eV Core-core repulsion = 25363.572113 eV Total energy + Delta-G solvation = -4166.453717 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.97446 -41.03234 -39.79173 -38.58168 -37.04804 -35.92385 -35.34055 -33.32792 -32.57738 -31.51717 -29.87496 -28.74223 -27.09390 -26.88784 -25.93123 -24.04124 -22.77215 -21.30834 -21.08018 -20.99654 -20.38099 -19.90415 -18.84463 -17.89755 -17.66612 -17.10817 -16.83104 -16.68086 -16.53836 -16.41881 -15.80103 -15.75136 -15.51644 -15.33500 -14.89260 -14.65864 -14.42277 -14.18112 -14.14654 -13.99229 -13.73395 -13.49438 -13.40572 -13.01955 -12.96891 -12.91345 -12.68054 -12.49294 -12.43703 -12.14485 -12.10241 -11.79178 -11.71341 -11.61237 -11.56274 -11.52136 -11.30994 -10.94763 -10.84435 -10.37528 -10.23006 -10.04026 -9.78747 -8.48666 -5.97526 1.36236 1.40162 1.53041 1.57956 2.01915 2.02681 2.27095 2.71139 2.88722 3.17092 3.20072 3.34041 3.49449 3.55367 3.62587 3.78958 3.97566 4.14930 4.18535 4.25711 4.35644 4.38710 4.41744 4.44528 4.52967 4.53859 4.57993 4.60312 4.68608 4.70635 4.74185 4.75626 4.90907 4.96326 5.01502 5.13276 5.15429 5.23533 5.31027 5.32336 5.34869 5.39043 5.43186 5.57051 5.84232 6.03363 6.39711 6.57670 6.66993 7.10346 7.16602 7.53151 8.08875 8.68683 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.002102 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.336261 B =13315.245392 C =14566.166257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.063 0.937 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.107 4.107 7 H 0.129 0.871 8 C 0.520 3.480 9 O -0.581 6.581 10 N -0.718 5.718 11 C 0.114 3.886 12 C 0.114 3.886 13 O -0.531 6.531 14 C 0.014 3.986 15 N -0.465 5.465 16 C 0.018 3.982 17 C 0.440 3.560 18 O -0.619 6.619 19 N -0.573 5.573 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.274 1.274 28 C -0.013 4.013 29 C -0.108 4.108 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.411 0.589 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.388 0.612 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.110 0.890 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.263 3.069 5.664 27.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.081 0.919 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.128 4.128 7 H 0.147 0.853 8 C 0.308 3.692 9 O -0.461 6.461 10 N -0.372 5.372 11 C -0.011 4.011 12 C 0.071 3.929 13 O -0.338 6.338 14 C -0.115 4.115 15 N -0.188 5.188 16 C -0.113 4.113 17 C 0.227 3.773 18 O -0.505 6.505 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.560 5.560 24 Si 0.817 3.183 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.143 4.143 29 C -0.146 4.146 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.249 0.751 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.238 0.762 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.100 0.900 44 H 0.128 0.872 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.092 0.908 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.715 2.359 5.774 26.461 hybrid contribution 0.746 1.173 -0.624 1.524 sum -24.969 3.533 5.151 25.739 Atomic orbital electron populations 1.21867 0.93909 1.02347 1.01828 1.21763 0.96569 0.99116 0.94294 0.91855 1.22445 0.96716 0.99240 0.96912 1.22534 0.98404 1.01155 0.93226 1.22228 0.93532 1.01932 0.95145 0.85348 1.21109 0.84513 0.78277 0.85295 1.90690 1.77737 1.48450 1.29189 1.45832 1.23332 1.38892 1.29158 1.21767 0.86679 0.97458 0.95194 1.22295 0.90050 0.85729 0.94826 1.86626 1.41018 1.30087 1.76095 1.24116 0.89965 1.04224 0.93182 1.68876 0.99336 1.39766 1.10781 1.22433 0.93988 1.00596 0.94298 1.20703 0.82575 0.82393 0.91584 1.90490 1.62686 1.52838 1.44445 1.41938 1.15266 1.54302 1.09572 1.19643 1.00459 1.39504 0.86665 0.90400 1.26056 0.96221 0.95898 1.03182 1.69667 1.13917 1.40667 1.31798 0.84924 0.77481 0.78763 0.77147 1.19519 1.19504 1.19839 1.24492 0.93384 0.95928 1.00467 1.22139 0.98869 0.95840 0.97737 0.91789 0.92926 0.92150 0.91181 0.89662 0.92557 0.88785 0.75127 0.89842 0.90597 0.76200 0.87925 0.87399 0.89991 0.87154 0.76994 0.91272 0.90710 0.91106 0.90793 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.84 71.98 0.64 -0.67 16 2 C -0.10 -1.17 3.50 -10.07 -0.04 -1.20 16 3 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -1.13 6.36 31.67 0.20 -0.92 16 5 C -0.12 -1.27 6.26 31.88 0.20 -1.07 16 6 C -0.11 -1.34 3.25 -10.47 -0.03 -1.38 16 7 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 8 C 0.52 9.78 7.15 87.65 0.63 10.41 16 9 O -0.58 -16.13 15.46 -3.06 -0.05 -16.18 16 10 N -0.72 -10.79 5.28 -463.07 -2.45 -13.23 16 11 C 0.11 2.05 5.42 86.38 0.47 2.52 16 12 C 0.11 2.40 1.72 -10.41 -0.02 2.38 16 13 O -0.53 -11.28 13.55 -148.98 -2.02 -13.30 16 14 C 0.01 0.32 7.13 83.58 0.60 0.91 16 15 N -0.47 -15.22 6.06 -932.05 -5.65 -20.87 16 16 C 0.02 0.64 5.31 85.56 0.45 1.09 16 17 C 0.44 21.23 7.62 87.66 0.67 21.90 16 18 O -0.62 -34.75 15.34 -3.07 -0.05 -34.79 16 19 N -0.57 -29.68 5.29 -306.98 -1.62 -31.30 16 20 C -0.33 -19.06 9.68 84.04 0.81 -18.24 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -49.76 13.05 21.66 0.28 -49.48 16 24 Si 0.99 43.08 29.55 68.60 2.03 45.10 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 28 C -0.01 -0.38 6.14 83.62 0.51 0.13 16 29 C -0.11 -1.60 5.81 31.32 0.18 -1.41 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.08 0.61 7.85 -2.39 -0.02 0.59 16 35 H 0.06 0.83 8.05 -2.38 -0.02 0.81 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.41 3.98 6.94 -92.71 -0.64 3.33 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.51 7.90 -2.39 -0.02 1.49 16 40 H 0.39 4.81 7.21 -74.06 -0.53 4.28 16 41 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.11 1.92 7.73 -2.39 -0.02 1.90 16 43 H 0.08 2.40 7.56 -2.39 -0.02 2.38 16 44 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 45 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 46 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 47 H 0.07 2.11 7.49 -2.39 -0.02 2.09 16 48 H 0.07 2.39 8.13 -2.39 -0.02 2.37 16 49 H 0.07 0.99 7.67 -2.39 -0.02 0.97 16 50 H 0.05 1.13 6.90 -2.39 -0.02 1.11 16 Total: -1.00 -77.62 402.83 -4.72 -82.34 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -0.94 Total: 37.53 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 5.74 Total: 14.17 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -9.44 Total: -114.88 kcal Atomic # 8 Polarization: -62.16 SS G_CDS: -2.11 Total: -64.27 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -77.62 -4.72 -82.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484299193.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.655 kcal (2) G-P(sol) polarization free energy of solvation -77.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds