Wall clock time and date at job start Tue Mar 31 2020 23:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 115.54822 * 2 1 4 4 C 1.53068 * 117.53466 * 145.71668 * 2 1 3 5 5 C 1.52999 * 59.98743 * 107.46775 * 4 2 1 6 6 H 1.08997 * 117.49638 * 107.49640 * 5 4 2 7 7 C 1.50696 * 117.50227 * 252.50294 * 5 4 2 8 8 O 1.21277 * 120.00503 * 68.74022 * 7 5 4 9 9 N 1.34776 * 119.99670 * 248.74533 * 7 5 4 10 10 C 1.46498 * 120.00016 * 185.12892 * 9 7 5 11 11 C 1.53004 * 109.54309 * 57.40635 * 10 9 7 12 12 N 1.46901 * 109.46879 * 54.39349 * 11 10 9 13 13 C 1.46904 * 110.99596 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.46854 * 179.97438 * 13 12 11 15 15 O 1.21299 * 120.00019 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99831 * 179.97438 * 14 13 12 17 17 C 1.37105 * 119.99917 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99760 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99896 * 179.73124 * 17 16 14 20 20 N 1.31410 * 120.00018 * 180.27873 * 19 17 16 21 21 Si 1.86803 * 120.00381 * 0.27080 * 19 17 16 22 22 H 1.48500 * 109.47047 * 90.00104 * 21 19 17 23 23 H 1.48496 * 109.47452 * 210.00790 * 21 19 17 24 24 H 1.48508 * 109.46709 * 330.00438 * 21 19 17 25 25 C 1.53183 * 109.61927 * 177.62847 * 10 9 7 26 26 C 1.53089 * 109.16350 * 62.93106 * 25 10 9 27 27 O 1.42907 * 109.41487 * 57.60823 * 26 25 10 28 28 C 1.42907 * 114.09642 * 298.84522 * 27 26 25 29 29 C 1.53088 * 109.41691 * 61.15749 * 28 27 26 30 30 H 1.08997 * 109.46891 * 205.66388 * 1 2 3 31 31 H 1.08999 * 109.47298 * 325.67009 * 1 2 3 32 32 H 1.09007 * 109.46791 * 85.66742 * 1 2 3 33 33 H 1.09000 * 117.50980 * 359.97438 * 4 2 1 34 34 H 1.09005 * 117.49971 * 214.95640 * 4 2 1 35 35 H 0.96998 * 120.00180 * 5.13043 * 9 7 5 36 36 H 1.09001 * 109.47144 * 294.39491 * 11 10 9 37 37 H 1.09002 * 109.47304 * 174.39077 * 11 10 9 38 38 H 1.00899 * 111.00338 * 56.04868 * 12 11 10 39 39 H 1.08997 * 109.47301 * 59.99875 * 13 12 11 40 40 H 1.09005 * 109.46895 * 299.99480 * 13 12 11 41 41 H 0.97000 * 120.00550 * 0.02562 * 16 14 13 42 42 H 0.97001 * 120.00330 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.52381 * 182.84037 * 25 10 9 44 44 H 1.09001 * 109.51955 * 303.02616 * 25 10 9 45 45 H 1.09004 * 109.47922 * 297.63021 * 26 25 10 46 46 H 1.08994 * 109.49027 * 177.59887 * 26 25 10 47 47 H 1.08998 * 109.48039 * 301.17078 * 28 27 26 48 48 H 1.09000 * 109.48742 * 181.14498 * 28 27 26 49 49 H 1.08997 * 109.52300 * 182.48675 * 29 28 27 50 50 H 1.09002 * 109.52194 * 62.29282 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2376 -1.1215 0.7645 5 6 2.2364 -1.1207 -0.7654 6 1 3.1711 -0.8745 -1.2692 7 6 1.3720 -2.1403 -1.4612 8 8 0.1639 -2.0524 -1.4025 9 7 1.9416 -3.1501 -2.1486 10 6 1.1060 -4.0757 -2.9175 11 6 0.2788 -3.2913 -3.9380 12 7 1.1725 -2.4684 -4.7640 13 6 0.4113 -1.6989 -5.7572 14 6 1.3594 -0.8684 -6.5834 15 8 2.5520 -0.9136 -6.3665 16 7 0.8823 -0.0764 -7.5639 17 6 1.7449 0.6787 -8.3159 18 1 2.8067 0.6385 -8.1227 19 6 1.2535 1.4910 -9.3305 20 7 2.0807 2.2106 -10.0548 21 14 -0.5831 1.5601 -9.6650 22 1 -1.1953 2.6366 -8.8456 23 1 -0.8138 1.8417 -11.1047 24 1 -1.2000 0.2565 -9.3106 25 6 1.9958 -5.0866 -3.6475 26 6 2.7605 -5.9199 -2.6159 27 8 1.8308 -6.5691 -1.7462 28 6 1.0040 -5.6722 -1.0017 29 6 0.1687 -4.8289 -1.9686 30 1 -0.3633 -0.9263 0.4451 31 1 -0.3634 0.8486 0.5795 32 1 -0.3633 0.0776 -1.0248 33 1 1.6131 -1.8594 1.2681 34 1 3.1730 -0.8755 1.2673 35 1 2.9047 -3.2639 -2.1342 36 1 -0.4280 -2.6472 -3.4148 37 1 -0.2668 -3.9871 -4.5754 38 1 1.8781 -3.0359 -5.2091 39 1 -0.2943 -1.0438 -5.2463 40 1 -0.1337 -2.3835 -6.4072 41 1 -0.0714 -0.0406 -7.7376 42 1 1.7378 2.7774 -10.7634 43 1 1.3761 -5.7426 -4.2587 44 1 2.7037 -4.5557 -4.2840 45 1 3.4105 -5.2682 -2.0318 46 1 3.3632 -6.6696 -3.1285 47 1 1.6310 -5.0174 -0.3966 48 1 0.3412 -6.2433 -0.3517 49 1 -0.4299 -4.1138 -1.4044 50 1 -0.4879 -5.4799 -2.5458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484858009.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:25 Heat of formation + Delta-G solvation = -84.477035 kcal Electronic energy + Delta-G solvation = -31144.592662 eV Core-core repulsion = 26979.852772 eV Total energy + Delta-G solvation = -4164.739890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.99513 -39.22546 -38.43424 -37.02544 -35.85797 -34.34404 -33.72587 -31.85415 -31.63859 -31.41681 -28.54695 -28.24188 -25.83283 -24.46878 -24.07402 -23.51370 -22.10544 -21.35318 -20.14214 -19.49280 -19.28161 -18.35694 -17.26344 -16.56494 -16.51321 -16.28106 -15.69407 -15.54386 -15.20241 -14.93637 -14.79576 -14.58306 -14.23437 -14.10171 -13.74305 -13.32025 -13.24751 -13.07512 -12.89004 -12.74718 -12.60922 -12.48855 -12.43786 -12.20890 -11.93004 -11.83371 -11.64947 -11.57716 -11.55760 -11.14798 -10.84651 -10.67208 -10.59068 -10.32443 -10.13086 -9.98230 -9.87353 -9.57151 -9.31046 -8.97528 -8.56178 -8.18945 -8.09986 -6.31529 -3.82821 2.55861 3.02757 3.07619 3.09622 3.15221 3.61731 3.71620 3.74754 4.05796 4.10796 4.31838 4.53733 4.56270 4.64204 4.69031 4.74839 4.75823 4.90392 4.93189 5.09369 5.14737 5.22076 5.29329 5.36871 5.38942 5.44472 5.49128 5.53951 5.56903 5.68252 5.74028 5.76436 5.78114 5.78511 5.83821 5.91976 5.94592 5.96178 6.01633 6.10381 6.44381 6.56205 6.92712 7.09973 7.55589 7.57948 7.60673 8.14078 8.32979 8.59728 8.94554 9.42441 9.82812 10.81610 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011756 B = 0.003093 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.134404 B = 9050.220896 C =10374.550056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.117 4.117 3 H 0.109 0.891 4 C -0.157 4.157 5 C -0.190 4.190 6 H 0.123 0.877 7 C 0.560 3.440 8 O -0.536 6.536 9 N -0.705 5.705 10 C 0.187 3.813 11 C 0.048 3.952 12 N -0.659 5.659 13 C 0.050 3.950 14 C 0.452 3.548 15 O -0.566 6.566 16 N -0.591 5.591 17 C -0.305 4.305 18 H 0.119 0.881 19 C 0.042 3.958 20 N -0.882 5.882 21 Si 0.879 3.121 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.270 1.270 25 C -0.165 4.165 26 C 0.063 3.937 27 O -0.384 6.384 28 C 0.066 3.934 29 C -0.165 4.165 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.398 0.602 36 H 0.095 0.905 37 H 0.032 0.968 38 H 0.344 0.656 39 H 0.086 0.914 40 H 0.042 0.958 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.050 0.950 46 H 0.096 0.904 47 H 0.050 0.950 48 H 0.091 0.909 49 H 0.098 0.902 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.419 -14.079 20.380 25.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.135 4.135 3 H 0.127 0.873 4 C -0.194 4.194 5 C -0.211 4.211 6 H 0.141 0.859 7 C 0.348 3.652 8 O -0.414 6.414 9 N -0.356 5.356 10 C 0.101 3.899 11 C -0.083 4.083 12 N -0.292 5.292 13 C -0.083 4.083 14 C 0.238 3.762 15 O -0.448 6.448 16 N -0.230 5.230 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.522 5.522 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.203 4.203 26 C -0.014 4.014 27 O -0.303 6.303 28 C -0.011 4.011 29 C -0.204 4.204 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.232 0.768 36 H 0.113 0.887 37 H 0.050 0.950 38 H 0.164 0.836 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.115 0.885 47 H 0.068 0.932 48 H 0.109 0.891 49 H 0.117 0.883 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.429 -13.566 20.817 25.083 hybrid contribution -1.059 -0.151 -1.391 1.755 sum -4.488 -13.717 19.426 24.200 Atomic orbital electron populations 1.21337 0.91502 1.00985 1.02759 1.22341 0.96587 0.93601 1.00998 0.87310 1.23068 1.02950 1.02213 0.91175 1.22307 1.02528 1.01191 0.95096 0.85918 1.19387 0.87916 0.80329 0.77595 1.90599 1.14546 1.74420 1.61786 1.45768 1.10148 1.29620 1.50041 1.20246 0.90820 0.88155 0.90692 1.22404 0.95373 0.95915 0.94580 1.59988 1.14474 1.29489 1.25236 1.21683 0.95918 0.97076 0.93637 1.19706 0.89285 0.84153 0.83101 1.90547 1.16103 1.68150 1.69998 1.42212 1.08445 1.40652 1.31715 1.19422 0.93209 1.19344 1.11351 0.86327 1.25032 0.98224 0.96570 0.96309 1.69620 1.34451 1.27229 1.20892 0.86674 0.85132 0.78658 0.78938 1.19563 1.20181 1.19554 1.22547 1.00485 0.98089 0.99180 1.22545 0.90966 0.96728 0.91143 1.87932 1.51206 1.33472 1.57641 1.22510 0.92970 0.92406 0.93178 1.22594 0.98913 0.99745 0.99178 0.91963 0.93608 0.91135 0.88546 0.88164 0.76783 0.88682 0.95043 0.83610 0.89578 0.93984 0.79698 0.91622 0.89519 0.89340 0.93150 0.88540 0.93214 0.89077 0.88340 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 8.43 37.16 0.31 -0.92 16 2 C -0.12 -1.21 6.41 -90.58 -0.58 -1.79 16 3 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 4 C -0.16 -1.33 9.88 -26.70 -0.26 -1.59 16 5 C -0.19 -2.01 6.19 -91.77 -0.57 -2.58 16 6 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 7 C 0.56 6.73 7.01 -10.99 -0.08 6.65 16 8 O -0.54 -7.50 9.40 5.56 0.05 -7.45 16 9 N -0.70 -7.26 3.97 -47.44 -0.19 -7.45 16 10 C 0.19 1.92 0.43 -131.63 -0.06 1.86 16 11 C 0.05 0.60 4.32 -3.82 -0.02 0.58 16 12 N -0.66 -10.10 5.84 -115.05 -0.67 -10.77 16 13 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 14 C 0.45 10.34 7.82 -10.99 -0.09 10.25 16 15 O -0.57 -15.05 15.78 5.54 0.09 -14.96 16 16 N -0.59 -14.26 5.09 -10.96 -0.06 -14.31 16 17 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 18 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 19 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 20 N -0.88 -25.88 13.96 55.50 0.77 -25.11 16 21 Si 0.88 19.61 27.74 -169.99 -4.72 14.89 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.27 -5.51 6.51 56.52 0.37 -5.14 16 25 C -0.16 -1.47 4.69 -26.59 -0.12 -1.59 16 26 C 0.06 0.51 6.67 37.20 0.25 0.76 16 27 O -0.38 -3.84 10.77 -35.23 -0.38 -4.22 16 28 C 0.07 0.59 6.68 37.20 0.25 0.84 16 29 C -0.17 -1.61 4.80 -26.59 -0.13 -1.74 16 30 H 0.06 0.73 7.02 -51.93 -0.36 0.37 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.96 7.26 -51.93 -0.38 0.59 16 33 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.40 3.53 7.46 -40.82 -0.30 3.23 16 36 H 0.09 1.38 6.35 -51.93 -0.33 1.05 16 37 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.34 5.31 6.81 -39.29 -0.27 5.04 16 39 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.37 7.93 5.76 -40.82 -0.24 7.69 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.82 6.86 -51.93 -0.36 0.46 16 45 H 0.05 0.37 7.05 -51.93 -0.37 0.00 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.44 7.75 -51.93 -0.40 0.04 16 48 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.10 1.11 6.14 -51.93 -0.32 0.79 16 50 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -33.35 390.17 -8.53 -41.88 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -7.95 Total: 17.83 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -1.37 Total: 3.78 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.14 Total: -57.63 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.24 Total: -26.63 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.72 Total: 14.89 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.35 -8.53 -41.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484858009.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.596 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds