Wall clock time and date at job start Tue Mar 31 2020 23:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 115.54822 * 2 1 4 4 C 1.53068 * 117.53466 * 145.71668 * 2 1 3 5 5 C 1.52999 * 59.98743 * 107.46775 * 4 2 1 6 6 H 1.08997 * 117.49638 * 107.49640 * 5 4 2 7 7 C 1.50696 * 117.50227 * 252.50294 * 5 4 2 8 8 O 1.21277 * 120.00503 * 68.74022 * 7 5 4 9 9 N 1.34776 * 119.99670 * 248.74533 * 7 5 4 10 10 C 1.46498 * 120.00016 * 185.12892 * 9 7 5 11 11 C 1.53004 * 109.54309 * 57.40635 * 10 9 7 12 12 N 1.46901 * 109.46879 * 54.39349 * 11 10 9 13 13 C 1.46904 * 110.99596 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.46854 * 179.97438 * 13 12 11 15 15 O 1.21299 * 120.00019 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99831 * 179.97438 * 14 13 12 17 17 C 1.37105 * 119.99917 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99760 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99896 * 179.73124 * 17 16 14 20 20 N 1.31410 * 120.00018 * 180.27873 * 19 17 16 21 21 Si 1.86803 * 120.00381 * 0.27080 * 19 17 16 22 22 H 1.48500 * 109.47047 * 90.00104 * 21 19 17 23 23 H 1.48496 * 109.47452 * 210.00790 * 21 19 17 24 24 H 1.48508 * 109.46709 * 330.00438 * 21 19 17 25 25 C 1.53183 * 109.61927 * 177.62847 * 10 9 7 26 26 C 1.53089 * 109.16350 * 62.93106 * 25 10 9 27 27 O 1.42907 * 109.41487 * 57.60823 * 26 25 10 28 28 C 1.42907 * 114.09642 * 298.84522 * 27 26 25 29 29 C 1.53088 * 109.41691 * 61.15749 * 28 27 26 30 30 H 1.08997 * 109.46891 * 205.66388 * 1 2 3 31 31 H 1.08999 * 109.47298 * 325.67009 * 1 2 3 32 32 H 1.09007 * 109.46791 * 85.66742 * 1 2 3 33 33 H 1.09000 * 117.50980 * 359.97438 * 4 2 1 34 34 H 1.09005 * 117.49971 * 214.95640 * 4 2 1 35 35 H 0.96998 * 120.00180 * 5.13043 * 9 7 5 36 36 H 1.09001 * 109.47144 * 294.39491 * 11 10 9 37 37 H 1.09002 * 109.47304 * 174.39077 * 11 10 9 38 38 H 1.00899 * 111.00338 * 56.04868 * 12 11 10 39 39 H 1.08997 * 109.47301 * 59.99875 * 13 12 11 40 40 H 1.09005 * 109.46895 * 299.99480 * 13 12 11 41 41 H 0.97000 * 120.00550 * 0.02562 * 16 14 13 42 42 H 0.97001 * 120.00330 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.52381 * 182.84037 * 25 10 9 44 44 H 1.09001 * 109.51955 * 303.02616 * 25 10 9 45 45 H 1.09004 * 109.47922 * 297.63021 * 26 25 10 46 46 H 1.08994 * 109.49027 * 177.59887 * 26 25 10 47 47 H 1.08998 * 109.48039 * 301.17078 * 28 27 26 48 48 H 1.09000 * 109.48742 * 181.14498 * 28 27 26 49 49 H 1.08997 * 109.52300 * 182.48675 * 29 28 27 50 50 H 1.09002 * 109.52194 * 62.29282 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2376 -1.1215 0.7645 5 6 2.2364 -1.1207 -0.7654 6 1 3.1711 -0.8745 -1.2692 7 6 1.3720 -2.1403 -1.4612 8 8 0.1639 -2.0524 -1.4025 9 7 1.9416 -3.1501 -2.1486 10 6 1.1060 -4.0757 -2.9175 11 6 0.2788 -3.2913 -3.9380 12 7 1.1725 -2.4684 -4.7640 13 6 0.4113 -1.6989 -5.7572 14 6 1.3594 -0.8684 -6.5834 15 8 2.5520 -0.9136 -6.3665 16 7 0.8823 -0.0764 -7.5639 17 6 1.7449 0.6787 -8.3159 18 1 2.8067 0.6385 -8.1227 19 6 1.2535 1.4910 -9.3305 20 7 2.0807 2.2106 -10.0548 21 14 -0.5831 1.5601 -9.6650 22 1 -1.1953 2.6366 -8.8456 23 1 -0.8138 1.8417 -11.1047 24 1 -1.2000 0.2565 -9.3106 25 6 1.9958 -5.0866 -3.6475 26 6 2.7605 -5.9199 -2.6159 27 8 1.8308 -6.5691 -1.7462 28 6 1.0040 -5.6722 -1.0017 29 6 0.1687 -4.8289 -1.9686 30 1 -0.3633 -0.9263 0.4451 31 1 -0.3634 0.8486 0.5795 32 1 -0.3633 0.0776 -1.0248 33 1 1.6131 -1.8594 1.2681 34 1 3.1730 -0.8755 1.2673 35 1 2.9047 -3.2639 -2.1342 36 1 -0.4280 -2.6472 -3.4148 37 1 -0.2668 -3.9871 -4.5754 38 1 1.8781 -3.0359 -5.2091 39 1 -0.2943 -1.0438 -5.2463 40 1 -0.1337 -2.3835 -6.4072 41 1 -0.0714 -0.0406 -7.7376 42 1 1.7378 2.7774 -10.7634 43 1 1.3761 -5.7426 -4.2587 44 1 2.7037 -4.5557 -4.2840 45 1 3.4105 -5.2682 -2.0318 46 1 3.3632 -6.6696 -3.1285 47 1 1.6310 -5.0174 -0.3966 48 1 0.3412 -6.2433 -0.3517 49 1 -0.4299 -4.1138 -1.4044 50 1 -0.4879 -5.4799 -2.5458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484858009.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:24 Heat of formation + Delta-G solvation = -110.288251 kcal Electronic energy + Delta-G solvation = -31145.711920 eV Core-core repulsion = 26979.852772 eV Total energy + Delta-G solvation = -4165.859149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.84633 -40.30899 -39.99192 -37.89751 -36.89693 -36.03668 -35.14878 -33.76018 -32.70914 -32.13043 -29.57266 -29.37941 -27.27045 -25.58944 -25.11878 -24.51961 -23.07626 -22.12162 -21.33244 -20.96047 -20.40997 -20.13802 -18.13948 -17.93534 -17.35102 -17.27161 -16.95572 -16.66095 -16.41369 -16.23846 -15.83104 -15.62604 -15.35198 -15.14930 -15.07925 -14.83230 -14.54482 -14.29342 -14.12750 -13.91640 -13.57150 -13.51100 -13.45106 -13.30450 -13.17513 -12.99807 -12.84077 -12.73290 -12.43588 -12.33692 -12.29153 -12.00518 -11.65362 -11.53879 -11.39911 -11.12045 -10.94474 -10.63423 -10.47006 -10.26846 -10.21826 -9.81824 -9.33907 -8.43505 -6.04044 1.27921 1.33162 1.41586 1.67965 1.92097 2.20336 2.26114 2.67706 2.91154 2.95702 3.12654 3.37523 3.51717 3.74843 3.75988 3.85820 3.91518 3.99708 4.03461 4.12376 4.24163 4.30952 4.34127 4.41980 4.47143 4.50379 4.53478 4.63558 4.68322 4.79780 4.82306 4.84062 4.91848 4.95805 5.00989 5.06225 5.07034 5.10858 5.17281 5.22709 5.49505 5.54270 5.68629 5.86388 5.98514 6.24417 6.39584 6.57182 6.71807 6.85278 7.36980 7.44798 7.92339 8.73963 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011756 B = 0.003093 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.134404 B = 9050.220896 C =10374.550056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.133 4.133 3 H 0.116 0.884 4 C -0.129 4.129 5 C -0.205 4.205 6 H 0.125 0.875 7 C 0.553 3.447 8 O -0.560 6.560 9 N -0.699 5.699 10 C 0.188 3.812 11 C 0.053 3.947 12 N -0.669 5.669 13 C 0.063 3.937 14 C 0.452 3.548 15 O -0.608 6.608 16 N -0.592 5.592 17 C -0.328 4.328 18 H 0.058 0.942 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.962 3.038 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.234 1.234 25 C -0.158 4.158 26 C 0.062 3.938 27 O -0.396 6.396 28 C 0.069 3.931 29 C -0.158 4.158 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.405 0.595 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.344 0.656 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.388 0.612 42 H 0.279 0.721 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.110 0.890 47 H 0.050 0.950 48 H 0.102 0.898 49 H 0.083 0.917 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 -15.557 21.421 27.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.151 4.151 3 H 0.134 0.866 4 C -0.166 4.166 5 C -0.226 4.226 6 H 0.143 0.857 7 C 0.341 3.659 8 O -0.439 6.439 9 N -0.350 5.350 10 C 0.102 3.898 11 C -0.077 4.077 12 N -0.302 5.302 13 C -0.069 4.069 14 C 0.240 3.760 15 O -0.493 6.493 16 N -0.233 5.233 17 C -0.457 4.457 18 H 0.076 0.924 19 C -0.212 4.212 20 N -0.573 5.573 21 Si 0.782 3.218 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.157 1.157 25 C -0.196 4.196 26 C -0.015 4.015 27 O -0.315 6.315 28 C -0.008 4.008 29 C -0.197 4.197 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.116 0.884 34 H 0.142 0.858 35 H 0.240 0.760 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.163 0.837 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.223 0.777 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.128 0.872 47 H 0.068 0.932 48 H 0.120 0.880 49 H 0.101 0.899 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.357 -15.076 21.878 27.104 hybrid contribution -0.335 0.300 -1.672 1.732 sum -5.691 -14.776 20.206 25.671 Atomic orbital electron populations 1.21212 0.92446 1.01143 1.01007 1.22427 0.95985 0.94437 1.02286 0.86557 1.23124 1.03362 1.00508 0.89609 1.22356 1.02414 1.01239 0.96638 0.85743 1.19686 0.87832 0.80741 0.77665 1.90593 1.15525 1.75076 1.62706 1.45744 1.10560 1.29217 1.49439 1.20258 0.91046 0.88129 0.90405 1.22377 0.95052 0.95624 0.94597 1.59949 1.15052 1.30315 1.24934 1.21564 0.94525 0.97140 0.93696 1.20830 0.89659 0.83236 0.82315 1.90526 1.18612 1.69205 1.70926 1.42048 1.08726 1.40692 1.31851 1.19009 0.91511 1.21736 1.13419 0.92417 1.26062 1.04874 0.95121 0.95098 1.69792 1.37727 1.28110 1.21680 0.85405 0.76864 0.80608 0.78914 1.18372 1.19782 1.15739 1.22496 1.00226 0.97711 0.99214 1.22657 0.90746 0.97155 0.90911 1.87924 1.51553 1.34088 1.57921 1.22519 0.92951 0.92343 0.92939 1.22498 0.98736 0.99391 0.99041 0.92645 0.92357 0.93978 0.88400 0.85830 0.75960 0.90459 0.93520 0.83656 0.88310 0.90860 0.77666 0.91107 0.89113 0.89713 0.92291 0.87161 0.93203 0.87988 0.89883 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.29 8.43 71.98 0.61 -1.68 16 2 C -0.13 -2.65 6.41 -10.77 -0.07 -2.72 16 3 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.13 -1.96 9.88 30.62 0.30 -1.65 16 5 C -0.21 -4.20 6.19 -11.54 -0.07 -4.27 16 6 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 7 C 0.55 13.04 7.01 87.66 0.61 13.65 16 8 O -0.56 -15.68 9.40 -3.02 -0.03 -15.71 16 9 N -0.70 -13.77 3.97 -422.38 -1.68 -15.45 16 10 C 0.19 3.61 0.43 3.73 0.00 3.61 16 11 C 0.05 1.26 4.32 86.30 0.37 1.63 16 12 N -0.67 -19.72 5.84 -517.89 -3.02 -22.75 16 13 C 0.06 2.05 6.17 85.56 0.53 2.58 16 14 C 0.45 20.64 7.82 87.66 0.69 21.32 16 15 O -0.61 -33.30 15.78 -3.09 -0.05 -33.35 16 16 N -0.59 -28.37 5.09 -306.97 -1.56 -29.94 16 17 C -0.33 -19.30 10.16 84.04 0.85 -18.45 16 18 H 0.06 4.02 7.39 -2.91 -0.02 4.00 16 19 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 20 N -0.93 -56.34 13.96 21.66 0.30 -56.04 16 21 Si 0.96 39.41 27.74 68.60 1.90 41.31 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.23 -8.16 6.51 99.48 0.65 -7.51 16 25 C -0.16 -2.54 4.69 30.69 0.14 -2.39 16 26 C 0.06 0.88 6.67 72.01 0.48 1.36 16 27 O -0.40 -7.08 10.77 -148.98 -1.60 -8.69 16 28 C 0.07 1.12 6.68 72.01 0.48 1.60 16 29 C -0.16 -2.86 4.80 30.68 0.15 -2.71 16 30 H 0.05 1.30 7.02 -2.39 -0.02 1.28 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 1.18 7.26 -2.38 -0.02 1.16 16 33 H 0.10 1.49 8.05 -2.39 -0.02 1.47 16 34 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.40 6.76 7.46 -92.71 -0.69 6.07 16 36 H 0.08 2.17 6.35 -2.39 -0.02 2.15 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.34 10.26 6.81 -89.69 -0.61 9.65 16 39 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 40 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.39 15.68 5.76 -92.71 -0.53 15.14 16 42 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.08 1.45 6.86 -2.39 -0.02 1.43 16 45 H 0.06 0.74 7.05 -2.39 -0.02 0.72 16 46 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.05 0.80 7.75 -2.39 -0.02 0.79 16 48 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.08 1.81 6.14 -2.39 -0.01 1.80 16 50 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -76.59 390.17 -1.11 -77.70 By element: Atomic # 1 Polarization: 52.20 SS G_CDS: -0.91 Total: 51.28 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 5.54 Total: 11.63 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -5.96 Total: -124.17 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: -1.68 Total: -57.75 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.90 Total: 41.31 kcal Total: -76.59 -1.11 -77.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484858009.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.593 kcal (2) G-P(sol) polarization free energy of solvation -76.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds