Wall clock time and date at job start Tue Mar 31 2020 23:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 115.56511 * 2 1 4 4 C 1.53007 * 117.49367 * 145.68741 * 2 1 3 5 5 C 1.52999 * 117.49663 * 214.30837 * 2 1 3 6 6 H 1.08999 * 117.52005 * 359.97438 * 5 2 1 7 7 C 1.50697 * 117.50055 * 145.02828 * 5 2 1 8 8 O 1.21285 * 119.99703 * 0.02562 * 7 5 2 9 9 N 1.34776 * 120.00518 * 180.02562 * 7 5 2 10 10 C 1.46494 * 120.00223 * 184.21971 * 9 7 5 11 11 C 1.53004 * 109.54095 * 56.16257 * 10 9 7 12 12 N 1.46893 * 109.47396 * 56.33471 * 11 10 9 13 13 C 1.46902 * 111.00153 * 177.67552 * 12 11 10 14 14 C 1.50701 * 109.46931 * 180.02562 * 13 12 11 15 15 O 1.21285 * 120.00135 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99703 * 179.97438 * 14 13 12 17 17 C 1.37098 * 119.99957 * 179.97438 * 16 14 13 18 18 H 1.07996 * 120.00500 * 0.02562 * 17 16 14 19 19 C 1.38953 * 119.99708 * 180.02562 * 17 16 14 20 20 N 1.31420 * 119.99632 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00377 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47107 * 90.00113 * 21 19 17 23 23 H 1.48502 * 109.47408 * 210.00070 * 21 19 17 24 24 H 1.48506 * 109.47075 * 329.99933 * 21 19 17 25 25 C 1.53174 * 109.54602 * 295.89259 * 10 9 7 26 26 C 1.53092 * 109.16484 * 297.11159 * 25 10 9 27 27 O 1.42904 * 109.41448 * 302.38940 * 26 25 10 28 28 C 1.42908 * 114.09277 * 61.16057 * 27 26 25 29 29 C 1.53095 * 109.41346 * 298.83775 * 28 27 26 30 30 H 1.08995 * 109.47818 * 205.69020 * 1 2 3 31 31 H 1.09004 * 109.47112 * 325.69239 * 1 2 3 32 32 H 1.09004 * 109.47010 * 85.68489 * 1 2 3 33 33 H 1.08996 * 117.49809 * 0.02562 * 4 2 1 34 34 H 1.08998 * 117.51538 * 214.96689 * 4 2 1 35 35 H 0.97002 * 119.99545 * 4.49798 * 9 7 5 36 36 H 1.09000 * 109.46941 * 176.34241 * 11 10 9 37 37 H 1.09002 * 109.46815 * 296.33760 * 11 10 9 38 38 H 1.00908 * 110.99973 * 53.72630 * 12 11 10 39 39 H 1.08997 * 109.47162 * 300.00164 * 13 12 11 40 40 H 1.08995 * 109.46600 * 60.00296 * 13 12 11 41 41 H 0.97000 * 120.00038 * 0.02562 * 16 14 13 42 42 H 0.97005 * 119.99776 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.52317 * 57.01761 * 25 10 9 44 44 H 1.09000 * 109.52237 * 177.20702 * 25 10 9 45 45 H 1.09002 * 109.48054 * 182.40880 * 26 25 10 46 46 H 1.08998 * 109.47893 * 62.37663 * 26 25 10 47 47 H 1.09003 * 109.47530 * 178.85770 * 28 27 26 48 48 H 1.08993 * 109.49400 * 58.83094 * 28 27 26 49 49 H 1.09005 * 109.52124 * 297.70244 * 29 28 27 50 50 H 1.09004 * 109.57327 * 177.54923 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1211 0.7651 5 6 2.2364 -1.1210 -0.7650 6 1 1.6115 -1.8590 -1.2680 7 6 3.5293 -0.7813 -1.4607 8 8 3.9721 0.3462 -1.4006 9 7 4.1935 -1.7303 -2.1496 10 6 5.4953 -1.4251 -2.7480 11 6 6.4503 -0.9189 -1.6651 12 7 6.5477 -1.9176 -0.5923 13 6 7.5003 -1.4893 0.4408 14 6 7.5738 -2.5370 1.5216 15 8 6.8994 -3.5416 1.4392 16 7 8.3897 -2.3579 2.5792 17 6 8.4562 -3.3106 3.5628 18 1 7.8551 -4.2049 3.4899 19 6 9.2970 -3.1257 4.6535 20 7 9.3611 -4.0393 5.5960 21 14 10.3362 -1.5786 4.7800 22 1 9.5751 -0.5290 5.5041 23 1 11.5875 -1.8820 5.5199 24 1 10.6721 -1.0950 3.4167 25 6 5.3244 -0.3506 -3.8262 26 6 4.4298 -0.8963 -4.9423 27 8 5.0093 -2.0889 -5.4753 28 6 5.1497 -3.1453 -4.5231 29 6 6.0733 -2.6899 -3.3903 30 1 -0.3634 -0.9260 0.4455 31 1 -0.3633 0.8489 0.5793 32 1 -0.3633 0.0773 -1.0248 33 1 1.6111 -1.8587 1.2680 34 1 3.1715 -0.8756 1.2683 35 1 3.8076 -2.6143 -2.2527 36 1 7.4366 -0.7538 -2.0987 37 1 6.0718 0.0180 -1.2560 38 1 6.7981 -2.8224 -0.9622 39 1 8.4860 -1.3586 -0.0057 40 1 7.1685 -0.5448 0.8717 41 1 8.9293 -1.5545 2.6449 42 1 9.9483 -3.9103 6.3573 43 1 4.8622 0.5342 -3.3887 44 1 6.2995 -0.0881 -4.2366 45 1 4.3395 -0.1513 -5.7328 46 1 3.4421 -1.1206 -4.5394 47 1 5.5780 -4.0204 -5.0118 48 1 4.1715 -3.3993 -4.1148 49 1 7.0635 -2.4747 -3.7919 50 1 6.1476 -3.4777 -2.6406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484858010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:28 Heat of formation + Delta-G solvation = -88.750768 kcal Electronic energy + Delta-G solvation = -30934.705503 eV Core-core repulsion = 26769.780290 eV Total energy + Delta-G solvation = -4164.925213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97134 -39.12008 -38.43831 -37.07161 -35.98843 -34.35232 -33.72851 -31.83105 -31.63747 -31.41931 -28.84262 -28.25799 -25.83221 -24.38738 -24.07731 -23.48728 -22.12552 -21.16654 -20.16687 -19.50449 -19.27696 -18.35512 -17.62908 -16.56965 -16.45714 -16.28361 -15.67766 -15.28271 -15.21707 -14.88235 -14.78554 -14.69689 -14.46860 -13.88670 -13.66245 -13.49371 -13.31451 -13.16909 -12.99309 -12.91154 -12.75144 -12.47603 -12.41134 -12.10055 -11.93509 -11.84688 -11.64909 -11.58220 -11.49665 -11.15006 -10.87629 -10.69119 -10.59255 -10.37708 -10.16249 -9.98360 -9.88733 -9.57477 -9.52030 -9.00136 -8.56373 -8.19014 -8.09802 -6.31717 -3.82954 2.57445 3.02693 3.02893 3.07423 3.15109 3.61154 3.74545 3.80391 4.05380 4.10620 4.32175 4.55644 4.58932 4.63475 4.70993 4.74830 4.77091 4.88836 4.92842 5.03987 5.13759 5.18136 5.21823 5.34472 5.38548 5.43508 5.48630 5.51871 5.56139 5.56538 5.68175 5.74648 5.76523 5.77800 5.83094 5.85862 5.91855 5.94441 5.98889 6.04257 6.21286 6.50039 6.92002 7.09970 7.53295 7.57801 7.60740 8.13910 8.29835 8.59566 8.94419 9.42277 9.82642 10.81408 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.003143 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.404703 B = 8906.904078 C =10537.853705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.126 4.126 3 H 0.115 0.885 4 C -0.139 4.139 5 C -0.192 4.192 6 H 0.117 0.883 7 C 0.559 3.441 8 O -0.542 6.542 9 N -0.705 5.705 10 C 0.187 3.813 11 C 0.046 3.954 12 N -0.659 5.659 13 C 0.049 3.951 14 C 0.452 3.548 15 O -0.565 6.565 16 N -0.591 5.591 17 C -0.304 4.304 18 H 0.119 0.881 19 C 0.041 3.959 20 N -0.882 5.882 21 Si 0.879 3.121 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.270 1.270 25 C -0.165 4.165 26 C 0.066 3.934 27 O -0.383 6.383 28 C 0.063 3.937 29 C -0.165 4.165 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.398 0.602 36 H 0.032 0.968 37 H 0.097 0.903 38 H 0.344 0.656 39 H 0.042 0.958 40 H 0.086 0.914 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.097 0.903 48 H 0.050 0.950 49 H 0.087 0.913 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.332 7.974 -19.561 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 H 0.133 0.867 4 C -0.176 4.176 5 C -0.213 4.213 6 H 0.135 0.865 7 C 0.347 3.653 8 O -0.420 6.420 9 N -0.356 5.356 10 C 0.100 3.900 11 C -0.084 4.084 12 N -0.292 5.292 13 C -0.084 4.084 14 C 0.238 3.762 15 O -0.447 6.447 16 N -0.230 5.230 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.522 5.522 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.204 4.204 26 C -0.011 4.011 27 O -0.302 6.302 28 C -0.014 4.014 29 C -0.204 4.204 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.233 0.767 36 H 0.050 0.950 37 H 0.115 0.885 38 H 0.164 0.836 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.068 0.932 47 H 0.115 0.885 48 H 0.068 0.932 49 H 0.105 0.895 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.846 8.221 -19.200 24.520 hybrid contribution 1.699 0.509 0.164 1.781 sum -11.147 8.730 -19.036 23.724 Atomic orbital electron populations 1.21391 0.92558 1.02198 1.01816 1.22351 0.94884 0.95105 1.02146 0.86691 1.23093 1.03243 1.00738 0.90544 1.22252 0.97695 1.04913 0.96428 0.86541 1.19435 0.84333 0.84427 0.77146 1.90593 1.68697 1.21330 1.61362 1.45737 1.19895 1.15005 1.54920 1.20262 0.83408 0.94588 0.91741 1.22426 0.96629 0.97702 0.91644 1.60020 1.51924 1.04960 1.12283 1.21690 0.94268 0.98873 0.93559 1.19695 0.83766 0.88724 0.84057 1.90545 1.45400 1.30317 1.78454 1.42211 1.39371 1.20579 1.20873 1.19420 1.24518 1.01464 0.97910 0.86316 1.25035 0.97717 0.97675 0.95715 1.69627 1.38478 1.33745 1.10335 0.86675 0.80878 0.83337 0.78517 1.19575 1.20183 1.19554 1.22581 1.01929 0.99953 0.95942 1.22517 0.95373 0.86881 0.96328 1.87935 1.83119 1.23109 1.36047 1.22547 0.98347 0.90301 0.90191 1.22552 1.00831 0.97992 0.98980 0.92378 0.91818 0.92261 0.87939 0.87760 0.76728 0.95004 0.88508 0.83587 0.93972 0.89605 0.79708 0.91627 0.88552 0.90408 0.88985 0.93206 0.88478 0.93178 0.89477 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.19 37.16 0.38 -0.58 16 2 C -0.13 -1.31 5.92 -90.62 -0.54 -1.84 16 3 H 0.12 1.36 7.67 -51.93 -0.40 0.97 16 4 C -0.14 -1.59 9.88 -26.72 -0.26 -1.86 16 5 C -0.19 -2.03 5.91 -91.77 -0.54 -2.57 16 6 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 7 C 0.56 6.94 7.03 -10.99 -0.08 6.87 16 8 O -0.54 -8.18 12.54 5.55 0.07 -8.11 16 9 N -0.70 -7.40 4.02 -47.44 -0.19 -7.59 16 10 C 0.19 1.96 0.42 -131.64 -0.06 1.90 16 11 C 0.05 0.59 4.35 -3.83 -0.02 0.58 16 12 N -0.66 -10.15 5.90 -115.06 -0.68 -10.83 16 13 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 14 C 0.45 10.29 7.82 -10.99 -0.09 10.21 16 15 O -0.57 -14.95 15.78 5.55 0.09 -14.86 16 16 N -0.59 -14.20 5.09 -10.97 -0.06 -14.26 16 17 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 18 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 19 C 0.04 1.14 5.50 -17.46 -0.10 1.05 16 20 N -0.88 -25.82 13.96 55.50 0.77 -25.05 16 21 Si 0.88 19.58 27.74 -169.99 -4.71 14.86 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.27 -5.50 6.52 56.52 0.37 -5.14 16 25 C -0.17 -1.65 4.82 -26.59 -0.13 -1.78 16 26 C 0.07 0.60 6.68 37.21 0.25 0.85 16 27 O -0.38 -3.85 10.77 -35.23 -0.38 -4.23 16 28 C 0.06 0.52 6.67 37.21 0.25 0.77 16 29 C -0.17 -1.50 4.65 -26.59 -0.12 -1.62 16 30 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 1.03 8.05 -51.93 -0.42 0.62 16 34 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.40 3.54 7.40 -40.82 -0.30 3.24 16 36 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 1.45 6.16 -51.93 -0.32 1.13 16 38 H 0.34 5.33 6.63 -39.29 -0.26 5.07 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.37 7.90 5.76 -40.82 -0.24 7.67 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.10 1.12 6.28 -51.93 -0.33 0.80 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.05 0.45 7.75 -51.93 -0.40 0.04 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.05 0.36 7.01 -51.93 -0.36 0.00 16 49 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.09 0.84 6.75 -51.93 -0.35 0.49 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -33.64 395.30 -8.36 -42.00 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -7.99 Total: 18.16 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.23 Total: 3.97 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.15 Total: -57.74 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.22 Total: -27.21 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.71 Total: 14.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.64 -8.36 -42.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484858010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.755 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds