Wall clock time and date at job start Tue Mar 31 2020 23:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 115.56511 * 2 1 4 4 C 1.53007 * 117.49367 * 145.68741 * 2 1 3 5 5 C 1.52999 * 117.49663 * 214.30837 * 2 1 3 6 6 H 1.08999 * 117.52005 * 359.97438 * 5 2 1 7 7 C 1.50697 * 117.50055 * 145.02828 * 5 2 1 8 8 O 1.21285 * 119.99703 * 0.02562 * 7 5 2 9 9 N 1.34776 * 120.00518 * 180.02562 * 7 5 2 10 10 C 1.46494 * 120.00223 * 184.21971 * 9 7 5 11 11 C 1.53004 * 109.54095 * 56.16257 * 10 9 7 12 12 N 1.46893 * 109.47396 * 56.33471 * 11 10 9 13 13 C 1.46902 * 111.00153 * 177.67552 * 12 11 10 14 14 C 1.50701 * 109.46931 * 180.02562 * 13 12 11 15 15 O 1.21285 * 120.00135 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99703 * 179.97438 * 14 13 12 17 17 C 1.37098 * 119.99957 * 179.97438 * 16 14 13 18 18 H 1.07996 * 120.00500 * 0.02562 * 17 16 14 19 19 C 1.38953 * 119.99708 * 180.02562 * 17 16 14 20 20 N 1.31420 * 119.99632 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00377 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47107 * 90.00113 * 21 19 17 23 23 H 1.48502 * 109.47408 * 210.00070 * 21 19 17 24 24 H 1.48506 * 109.47075 * 329.99933 * 21 19 17 25 25 C 1.53174 * 109.54602 * 295.89259 * 10 9 7 26 26 C 1.53092 * 109.16484 * 297.11159 * 25 10 9 27 27 O 1.42904 * 109.41448 * 302.38940 * 26 25 10 28 28 C 1.42908 * 114.09277 * 61.16057 * 27 26 25 29 29 C 1.53095 * 109.41346 * 298.83775 * 28 27 26 30 30 H 1.08995 * 109.47818 * 205.69020 * 1 2 3 31 31 H 1.09004 * 109.47112 * 325.69239 * 1 2 3 32 32 H 1.09004 * 109.47010 * 85.68489 * 1 2 3 33 33 H 1.08996 * 117.49809 * 0.02562 * 4 2 1 34 34 H 1.08998 * 117.51538 * 214.96689 * 4 2 1 35 35 H 0.97002 * 119.99545 * 4.49798 * 9 7 5 36 36 H 1.09000 * 109.46941 * 176.34241 * 11 10 9 37 37 H 1.09002 * 109.46815 * 296.33760 * 11 10 9 38 38 H 1.00908 * 110.99973 * 53.72630 * 12 11 10 39 39 H 1.08997 * 109.47162 * 300.00164 * 13 12 11 40 40 H 1.08995 * 109.46600 * 60.00296 * 13 12 11 41 41 H 0.97000 * 120.00038 * 0.02562 * 16 14 13 42 42 H 0.97005 * 119.99776 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.52317 * 57.01761 * 25 10 9 44 44 H 1.09000 * 109.52237 * 177.20702 * 25 10 9 45 45 H 1.09002 * 109.48054 * 182.40880 * 26 25 10 46 46 H 1.08998 * 109.47893 * 62.37663 * 26 25 10 47 47 H 1.09003 * 109.47530 * 178.85770 * 28 27 26 48 48 H 1.08993 * 109.49400 * 58.83094 * 28 27 26 49 49 H 1.09005 * 109.52124 * 297.70244 * 29 28 27 50 50 H 1.09004 * 109.57327 * 177.54923 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1211 0.7651 5 6 2.2364 -1.1210 -0.7650 6 1 1.6115 -1.8590 -1.2680 7 6 3.5293 -0.7813 -1.4607 8 8 3.9721 0.3462 -1.4006 9 7 4.1935 -1.7303 -2.1496 10 6 5.4953 -1.4251 -2.7480 11 6 6.4503 -0.9189 -1.6651 12 7 6.5477 -1.9176 -0.5923 13 6 7.5003 -1.4893 0.4408 14 6 7.5738 -2.5370 1.5216 15 8 6.8994 -3.5416 1.4392 16 7 8.3897 -2.3579 2.5792 17 6 8.4562 -3.3106 3.5628 18 1 7.8551 -4.2049 3.4899 19 6 9.2970 -3.1257 4.6535 20 7 9.3611 -4.0393 5.5960 21 14 10.3362 -1.5786 4.7800 22 1 9.5751 -0.5290 5.5041 23 1 11.5875 -1.8820 5.5199 24 1 10.6721 -1.0950 3.4167 25 6 5.3244 -0.3506 -3.8262 26 6 4.4298 -0.8963 -4.9423 27 8 5.0093 -2.0889 -5.4753 28 6 5.1497 -3.1453 -4.5231 29 6 6.0733 -2.6899 -3.3903 30 1 -0.3634 -0.9260 0.4455 31 1 -0.3633 0.8489 0.5793 32 1 -0.3633 0.0773 -1.0248 33 1 1.6111 -1.8587 1.2680 34 1 3.1715 -0.8756 1.2683 35 1 3.8076 -2.6143 -2.2527 36 1 7.4366 -0.7538 -2.0987 37 1 6.0718 0.0180 -1.2560 38 1 6.7981 -2.8224 -0.9622 39 1 8.4860 -1.3586 -0.0057 40 1 7.1685 -0.5448 0.8717 41 1 8.9293 -1.5545 2.6449 42 1 9.9483 -3.9103 6.3573 43 1 4.8622 0.5342 -3.3887 44 1 6.2995 -0.0881 -4.2366 45 1 4.3395 -0.1513 -5.7328 46 1 3.4421 -1.1206 -4.5394 47 1 5.5780 -4.0204 -5.0118 48 1 4.1715 -3.3993 -4.1148 49 1 7.0635 -2.4747 -3.7919 50 1 6.1476 -3.4777 -2.6406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484858010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:27 Heat of formation + Delta-G solvation = -115.016525 kcal Electronic energy + Delta-G solvation = -30935.844472 eV Core-core repulsion = 26769.780290 eV Total energy + Delta-G solvation = -4166.064182 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85696 -40.30321 -39.94114 -37.96226 -37.07131 -36.05184 -35.18226 -33.75861 -32.71282 -32.14604 -29.61155 -29.49058 -27.28194 -25.57825 -25.13979 -24.49985 -23.11866 -22.01159 -21.33177 -20.99684 -20.43268 -20.15189 -18.51844 -17.97488 -17.35482 -17.25647 -16.95471 -16.67993 -16.34195 -16.11576 -15.90280 -15.59383 -15.55860 -15.24690 -14.96610 -14.75354 -14.56928 -14.21033 -14.17411 -14.09813 -13.65218 -13.59881 -13.56227 -13.32485 -13.07348 -12.93325 -12.86627 -12.75326 -12.43620 -12.31578 -12.30241 -12.00634 -11.70614 -11.53984 -11.43929 -11.22227 -10.98814 -10.66967 -10.47700 -10.46093 -10.26722 -9.88205 -9.35172 -8.43483 -6.03881 1.27849 1.32927 1.41381 1.61417 1.91943 2.16192 2.20269 2.65998 2.94177 2.94525 3.12675 3.36301 3.49467 3.73574 3.78078 3.84321 3.87713 3.91945 4.01691 4.11674 4.18699 4.25604 4.33051 4.40139 4.42768 4.45572 4.50591 4.60402 4.66627 4.78294 4.78846 4.80777 4.89644 4.94371 4.95991 5.05200 5.05406 5.07171 5.13828 5.20913 5.43274 5.49436 5.61268 5.85536 5.97684 6.23279 6.38669 6.57130 6.66002 6.85330 7.36906 7.37146 7.92210 8.73953 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.003143 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.404703 B = 8906.904078 C =10537.853705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.189 4.189 6 H 0.145 0.855 7 C 0.551 3.449 8 O -0.573 6.573 9 N -0.697 5.697 10 C 0.186 3.814 11 C 0.051 3.949 12 N -0.669 5.669 13 C 0.062 3.938 14 C 0.452 3.548 15 O -0.607 6.607 16 N -0.592 5.592 17 C -0.327 4.327 18 H 0.058 0.942 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.961 3.039 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.234 1.234 25 C -0.158 4.158 26 C 0.069 3.931 27 O -0.395 6.395 28 C 0.062 3.938 29 C -0.159 4.159 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.407 0.593 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.344 0.656 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.388 0.612 42 H 0.279 0.721 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.103 0.897 46 H 0.051 0.949 47 H 0.112 0.888 48 H 0.060 0.940 49 H 0.091 0.909 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.075 9.665 -21.534 26.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.138 4.138 3 H 0.113 0.887 4 C -0.189 4.189 5 C -0.210 4.210 6 H 0.162 0.838 7 C 0.339 3.661 8 O -0.453 6.453 9 N -0.347 5.347 10 C 0.100 3.900 11 C -0.078 4.078 12 N -0.303 5.303 13 C -0.070 4.070 14 C 0.240 3.760 15 O -0.491 6.491 16 N -0.233 5.233 17 C -0.456 4.456 18 H 0.076 0.924 19 C -0.211 4.211 20 N -0.573 5.573 21 Si 0.782 3.218 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.158 1.158 25 C -0.197 4.197 26 C -0.008 4.008 27 O -0.314 6.314 28 C -0.015 4.015 29 C -0.197 4.197 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.243 0.757 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.164 0.836 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.223 0.777 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.122 0.878 46 H 0.069 0.931 47 H 0.130 0.870 48 H 0.079 0.921 49 H 0.109 0.891 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.598 9.904 -21.211 26.584 hybrid contribution 1.555 -0.109 0.761 1.735 sum -11.043 9.795 -20.450 25.221 Atomic orbital electron populations 1.21392 0.90243 1.03012 1.02795 1.22356 0.96474 0.93802 1.01139 0.88685 1.23017 1.02399 1.02238 0.91240 1.22385 0.97349 1.05622 0.95601 0.83770 1.19792 0.84899 0.84247 0.77142 1.90580 1.69555 1.22634 1.62519 1.45708 1.19744 1.15084 1.54181 1.20290 0.82893 0.95614 0.91216 1.22391 0.97952 0.96122 0.91354 1.59976 1.51671 1.05609 1.12998 1.21574 0.96515 0.96726 0.92233 1.20792 0.81796 0.89054 0.84344 1.90524 1.46646 1.32555 1.79398 1.42046 1.40379 1.20440 1.20461 1.19007 1.25123 1.01173 1.00318 0.92366 1.26058 0.98713 1.02017 0.94356 1.69798 1.39623 1.36622 1.11244 0.85410 0.78270 0.77693 0.80451 1.18403 1.19782 1.15768 1.22492 1.02310 0.99007 0.95895 1.22528 0.94999 0.86987 0.96282 1.87930 1.83197 1.23533 1.36720 1.22669 0.98790 0.90267 0.89776 1.22503 1.01205 0.96902 0.99072 0.91406 0.91233 0.91110 0.86500 0.91119 0.75681 0.93432 0.90518 0.83577 0.90824 0.88380 0.77691 0.91115 0.90280 0.89877 0.87849 0.93104 0.87040 0.92149 0.89054 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 10.19 71.98 0.73 -0.91 16 2 C -0.12 -2.41 5.92 -10.79 -0.06 -2.48 16 3 H 0.09 2.32 7.67 -2.39 -0.02 2.30 16 4 C -0.15 -3.52 9.88 30.60 0.30 -3.22 16 5 C -0.19 -3.85 5.91 -11.54 -0.07 -3.92 16 6 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 7 C 0.55 13.48 7.03 87.66 0.62 14.09 16 8 O -0.57 -17.45 12.54 -3.05 -0.04 -17.49 16 9 N -0.70 -13.91 4.02 -422.40 -1.70 -15.61 16 10 C 0.19 3.65 0.42 3.72 0.00 3.66 16 11 C 0.05 1.25 4.35 86.31 0.38 1.63 16 12 N -0.67 -19.94 5.90 -517.94 -3.05 -23.00 16 13 C 0.06 2.02 6.17 85.56 0.53 2.55 16 14 C 0.45 20.65 7.82 87.66 0.69 21.33 16 15 O -0.61 -33.13 15.78 -3.04 -0.05 -33.18 16 16 N -0.59 -28.35 5.09 -306.99 -1.56 -29.91 16 17 C -0.33 -19.24 10.16 84.04 0.85 -18.38 16 18 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 19 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 20 N -0.93 -56.26 13.96 21.67 0.30 -55.96 16 21 Si 0.96 39.42 27.74 68.60 1.90 41.32 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.23 -8.19 6.52 99.48 0.65 -7.54 16 25 C -0.16 -2.93 4.82 30.68 0.15 -2.79 16 26 C 0.07 1.12 6.68 72.01 0.48 1.60 16 27 O -0.39 -7.02 10.77 -148.98 -1.60 -8.62 16 28 C 0.06 0.87 6.67 72.01 0.48 1.35 16 29 C -0.16 -2.56 4.65 30.68 0.14 -2.42 16 30 H 0.07 0.83 7.90 -2.39 -0.02 0.81 16 31 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.12 2.32 8.05 -2.39 -0.02 2.30 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.41 6.63 7.40 -92.71 -0.69 5.94 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 2.24 6.16 -2.39 -0.01 2.23 16 38 H 0.34 10.33 6.63 -89.69 -0.59 9.74 16 39 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.39 15.67 5.76 -92.71 -0.53 15.14 16 42 H 0.28 15.40 8.31 -92.70 -0.77 14.63 16 43 H 0.08 1.79 6.28 -2.39 -0.01 1.78 16 44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.05 0.81 7.75 -2.39 -0.02 0.80 16 47 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.06 0.73 7.01 -2.39 -0.02 0.71 16 49 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 50 H 0.09 1.48 6.75 -2.38 -0.02 1.46 16 Total: -1.00 -77.72 395.30 -1.02 -78.74 By element: Atomic # 1 Polarization: 52.75 SS G_CDS: -0.90 Total: 51.85 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 5.68 Total: 11.86 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -6.01 Total: -124.48 kcal Atomic # 8 Polarization: -57.60 SS G_CDS: -1.69 Total: -59.29 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 1.90 Total: 41.32 kcal Total: -77.72 -1.02 -78.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484858010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.280 kcal (2) G-P(sol) polarization free energy of solvation -77.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds