Wall clock time and date at job start Tue Mar 31 2020 23:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 115.55908 * 2 1 4 4 C 1.52997 * 117.50280 * 214.30900 * 2 1 3 5 5 C 1.53000 * 60.00209 * 252.50981 * 4 2 1 6 6 H 1.08996 * 117.49978 * 107.50517 * 5 4 2 7 7 C 1.50697 * 117.49843 * 252.51183 * 5 4 2 8 8 O 1.21282 * 120.00141 * 68.33024 * 7 5 4 9 9 N 1.34780 * 119.99477 * 248.60487 * 7 5 4 10 10 C 1.46509 * 119.99643 * 174.64079 * 9 7 5 11 11 C 1.53002 * 109.53953 * 303.84577 * 10 9 7 12 12 N 1.46897 * 109.47237 * 305.61850 * 11 10 9 13 13 C 1.46900 * 110.99992 * 174.73535 * 12 11 10 14 14 C 1.50697 * 109.47112 * 180.02562 * 13 12 11 15 15 O 1.21290 * 119.99940 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00274 * 179.97438 * 14 13 12 17 17 C 1.37090 * 120.00415 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99755 * 0.02562 * 17 16 14 19 19 C 1.38951 * 120.00066 * 179.97438 * 17 16 14 20 20 N 1.31416 * 119.99767 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00322 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47209 * 89.99553 * 21 19 17 23 23 H 1.48501 * 109.47330 * 209.99859 * 21 19 17 24 24 H 1.48504 * 109.46960 * 329.99965 * 21 19 17 25 25 C 1.53172 * 109.54373 * 183.57690 * 10 9 7 26 26 C 1.53096 * 109.16244 * 297.11451 * 25 10 9 27 27 O 1.42897 * 109.41330 * 302.39219 * 26 25 10 28 28 C 1.42900 * 114.10316 * 61.16037 * 27 26 25 29 29 C 1.53101 * 109.41144 * 298.84181 * 28 27 26 30 30 H 1.08997 * 109.47302 * 274.31380 * 1 2 3 31 31 H 1.08996 * 109.47301 * 34.31931 * 1 2 3 32 32 H 1.09003 * 109.46465 * 154.31097 * 1 2 3 33 33 H 1.08998 * 117.49906 * 145.01729 * 4 2 1 34 34 H 1.09008 * 117.51675 * 359.97438 * 4 2 1 35 35 H 0.96996 * 120.00418 * 354.64026 * 9 7 5 36 36 H 1.08993 * 109.47329 * 65.62806 * 11 10 9 37 37 H 1.09008 * 109.46349 * 185.62488 * 11 10 9 38 38 H 1.00894 * 111.00298 * 298.69503 * 12 11 10 39 39 H 1.09008 * 109.46977 * 300.00183 * 13 12 11 40 40 H 1.09001 * 109.47116 * 60.00033 * 13 12 11 41 41 H 0.96997 * 119.99652 * 359.97438 * 16 14 13 42 42 H 0.97006 * 120.00064 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.52260 * 57.01526 * 25 10 9 44 44 H 1.08997 * 109.52516 * 177.20852 * 25 10 9 45 45 H 1.08993 * 109.48108 * 182.40689 * 26 25 10 46 46 H 1.09005 * 109.47795 * 62.37590 * 26 25 10 47 47 H 1.08995 * 109.48569 * 178.85697 * 28 27 26 48 48 H 1.09004 * 109.48409 * 58.82043 * 28 27 26 49 49 H 1.08997 * 109.51918 * 297.69880 * 29 28 27 50 50 H 1.09006 * 109.51914 * 177.51270 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2366 -1.1209 -0.7649 5 6 2.2365 -1.1209 0.7651 6 1 1.6116 -1.8586 1.2684 7 6 3.5293 -0.7809 1.4609 8 8 3.9744 0.3454 1.3969 9 7 4.1936 -1.7300 2.1497 10 6 5.5067 -1.4321 2.7270 11 6 6.4513 -0.9457 1.6261 12 7 6.4877 -1.9341 0.5400 13 6 7.2870 -1.4444 -0.5910 14 6 7.3007 -2.4826 -1.6832 15 8 6.7031 -3.5274 -1.5343 16 7 7.9763 -2.2497 -2.8260 17 6 7.9893 -3.1943 -3.8194 18 1 7.4577 -4.1251 -3.6864 19 6 8.6853 -2.9539 -4.9977 20 7 8.6973 -3.8592 -5.9502 21 14 9.6041 -1.3438 -5.2279 22 1 10.9946 -1.4916 -4.7284 23 1 9.6310 -0.9911 -6.6702 24 1 8.9168 -0.2688 -4.4681 25 6 6.0801 -2.6958 3.3754 26 6 5.1673 -3.1290 4.5256 27 8 5.0509 -2.0609 5.4677 28 6 4.4768 -0.8681 4.9295 29 6 5.3618 -0.3441 3.7955 30 1 -0.3634 0.0773 1.0247 31 1 -0.3634 0.8487 -0.5794 32 1 -0.3632 -0.9261 -0.4455 33 1 3.1716 -0.8751 -1.2682 34 1 1.6116 -1.8589 -1.2680 35 1 3.8023 -2.6103 2.2633 36 1 6.0955 0.0084 1.2374 37 1 7.4533 -0.8198 2.0365 38 1 6.8348 -2.8219 0.8706 39 1 6.8495 -0.5218 -0.9726 40 1 8.3073 -1.2525 -0.2588 41 1 8.4534 -1.4136 -2.9455 42 1 9.1835 -3.6916 -6.7726 43 1 6.1349 -3.4929 2.6339 44 1 7.0779 -2.4868 3.7611 45 1 5.5930 -4.0032 5.0180 46 1 4.1810 -3.3769 4.1333 47 1 4.4050 -0.1136 5.7129 48 1 3.4814 -1.0863 4.5425 49 1 6.3451 -0.0875 4.1897 50 1 4.9029 0.5408 3.3545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484858011.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:31 Heat of formation + Delta-G solvation = -115.092588 kcal Electronic energy + Delta-G solvation = -31017.310749 eV Core-core repulsion = 26851.243269 eV Total energy + Delta-G solvation = -4166.067480 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.83401 -40.29689 -39.93325 -37.95262 -37.05486 -36.04955 -35.17995 -33.75706 -32.70861 -32.13325 -29.60564 -29.49193 -27.27592 -25.58144 -25.11939 -24.49775 -23.09911 -22.00485 -21.32822 -20.99010 -20.41766 -20.15571 -18.50455 -17.97665 -17.32542 -17.26949 -16.94810 -16.65957 -16.36301 -16.10059 -15.90673 -15.58921 -15.53164 -15.26359 -14.96631 -14.73188 -14.57263 -14.20476 -14.17523 -14.08751 -13.65071 -13.58961 -13.54806 -13.30776 -13.08719 -12.93107 -12.86342 -12.73901 -12.44215 -12.31029 -12.29890 -12.01334 -11.69201 -11.53524 -11.43225 -11.22101 -10.98910 -10.66011 -10.47271 -10.45186 -10.26679 -9.86571 -9.35023 -8.43458 -6.03748 1.28412 1.32065 1.41292 1.61926 1.92170 2.17724 2.20142 2.65908 2.94805 2.95258 3.12918 3.35957 3.51112 3.76100 3.78918 3.86072 3.88464 3.92204 4.02885 4.11590 4.18881 4.26677 4.33158 4.40785 4.42629 4.45168 4.50137 4.62089 4.68318 4.78121 4.79499 4.81893 4.89471 4.93228 4.95751 5.05900 5.06500 5.08067 5.14758 5.20574 5.43037 5.49477 5.62873 5.85501 5.97599 6.24126 6.39084 6.57166 6.67494 6.85445 7.37056 7.38191 7.92277 8.73984 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.003211 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.374909 B = 8718.149282 C =10323.732859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.118 4.118 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.188 4.188 6 H 0.144 0.856 7 C 0.552 3.448 8 O -0.573 6.573 9 N -0.695 5.695 10 C 0.188 3.812 11 C 0.052 3.948 12 N -0.668 5.668 13 C 0.063 3.937 14 C 0.453 3.547 15 O -0.606 6.606 16 N -0.592 5.592 17 C -0.327 4.327 18 H 0.058 0.942 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.961 3.039 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.238 1.238 25 C -0.157 4.157 26 C 0.061 3.939 27 O -0.395 6.395 28 C 0.069 3.931 29 C -0.159 4.159 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.407 0.593 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.345 0.655 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.387 0.613 42 H 0.279 0.721 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.111 0.889 46 H 0.059 0.941 47 H 0.103 0.897 48 H 0.050 0.950 49 H 0.083 0.917 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.602 9.475 21.943 26.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.137 4.137 3 H 0.114 0.886 4 C -0.189 4.189 5 C -0.209 4.209 6 H 0.161 0.839 7 C 0.340 3.660 8 O -0.454 6.454 9 N -0.345 5.345 10 C 0.101 3.899 11 C -0.078 4.078 12 N -0.301 5.301 13 C -0.069 4.069 14 C 0.240 3.760 15 O -0.490 6.490 16 N -0.234 5.234 17 C -0.456 4.456 18 H 0.077 0.923 19 C -0.211 4.211 20 N -0.573 5.573 21 Si 0.781 3.219 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.161 1.161 25 C -0.195 4.195 26 C -0.015 4.015 27 O -0.314 6.314 28 C -0.008 4.008 29 C -0.198 4.198 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.243 0.757 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.164 0.836 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.223 0.777 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.129 0.871 46 H 0.077 0.923 47 H 0.121 0.879 48 H 0.068 0.932 49 H 0.101 0.899 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.138 9.660 21.717 26.249 hybrid contribution 1.487 -0.025 -0.920 1.749 sum -9.650 9.635 20.797 24.869 Atomic orbital electron populations 1.21392 0.90252 1.02991 1.02808 1.22358 0.96471 0.93792 1.01111 0.88641 1.22996 1.02357 1.02257 0.91305 1.22381 0.97440 1.05554 0.95523 0.83856 1.19761 0.84913 0.84239 0.77098 1.90576 1.69583 1.22678 1.62518 1.45686 1.18908 1.15385 1.54565 1.20282 0.82669 0.95611 0.91316 1.22373 0.97972 0.96203 0.91262 1.59906 1.56803 1.05860 1.07494 1.21553 0.98118 0.96290 0.90972 1.20783 0.81704 0.89259 0.84206 1.90526 1.47531 1.29761 1.81212 1.42049 1.48030 1.17978 1.15302 1.19006 1.32019 0.98952 0.95603 0.92340 1.26047 0.98217 1.02563 0.94285 1.69795 1.43121 1.36896 1.07471 0.85415 0.79416 0.77875 0.79152 1.18017 1.19881 1.16118 1.22488 1.01201 0.96952 0.98883 1.22675 0.98920 0.90071 0.89881 1.87922 1.83371 1.22866 1.37253 1.22523 0.95111 0.87053 0.96090 1.22504 1.02319 0.99015 0.95922 0.91063 0.91218 0.91470 0.91210 0.86661 0.75742 0.90587 0.93353 0.83561 0.88658 0.90831 0.77732 0.91116 0.89581 0.89044 0.87051 0.92250 0.87895 0.93186 0.89882 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 10.19 71.98 0.73 -0.97 16 2 C -0.12 -2.47 5.92 -10.79 -0.06 -2.54 16 3 H 0.10 2.37 7.67 -2.39 -0.02 2.35 16 4 C -0.15 -3.66 9.88 30.59 0.30 -3.36 16 5 C -0.19 -3.95 5.91 -11.54 -0.07 -4.02 16 6 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 7 C 0.55 13.66 7.02 87.66 0.62 14.28 16 8 O -0.57 -17.55 12.56 -3.04 -0.04 -17.59 16 9 N -0.70 -14.04 3.98 -422.37 -1.68 -15.72 16 10 C 0.19 3.68 0.43 3.72 0.00 3.68 16 11 C 0.05 1.24 4.28 86.30 0.37 1.61 16 12 N -0.67 -19.71 5.79 -517.93 -3.00 -22.71 16 13 C 0.06 2.06 6.16 85.56 0.53 2.59 16 14 C 0.45 20.63 7.82 87.66 0.69 21.32 16 15 O -0.61 -32.96 15.78 -3.06 -0.05 -33.01 16 16 N -0.59 -28.38 5.09 -306.99 -1.56 -29.94 16 17 C -0.33 -19.20 10.16 84.04 0.85 -18.35 16 18 H 0.06 4.06 7.39 -2.91 -0.02 4.04 16 19 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 20 N -0.93 -56.23 13.96 21.66 0.30 -55.93 16 21 Si 0.96 39.48 27.74 68.60 1.90 41.38 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.24 -8.47 6.52 99.48 0.65 -7.82 16 25 C -0.16 -2.52 4.69 30.68 0.14 -2.38 16 26 C 0.06 0.86 6.67 72.01 0.48 1.34 16 27 O -0.40 -7.06 10.76 -148.98 -1.60 -8.67 16 28 C 0.07 1.13 6.68 72.02 0.48 1.61 16 29 C -0.16 -2.96 4.81 30.69 0.15 -2.81 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.87 7.90 -2.39 -0.02 0.85 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.12 2.42 8.05 -2.38 -0.02 2.40 16 35 H 0.41 6.77 7.41 -92.71 -0.69 6.09 16 36 H 0.08 2.19 6.25 -2.39 -0.01 2.18 16 37 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.34 10.27 7.00 -89.70 -0.63 9.64 16 39 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.39 15.72 5.76 -92.71 -0.53 15.19 16 42 H 0.28 15.40 8.31 -92.70 -0.77 14.63 16 43 H 0.09 1.47 6.99 -2.38 -0.02 1.46 16 44 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.06 0.73 7.02 -2.38 -0.02 0.71 16 47 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.05 0.82 7.75 -2.38 -0.02 0.80 16 49 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.08 1.81 6.24 -2.38 -0.01 1.79 16 Total: -1.00 -77.23 395.82 -0.98 -78.21 By element: Atomic # 1 Polarization: 53.11 SS G_CDS: -0.93 Total: 52.18 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 5.68 Total: 11.81 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -5.94 Total: -124.31 kcal Atomic # 8 Polarization: -57.58 SS G_CDS: -1.69 Total: -59.27 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.90 Total: 41.38 kcal Total: -77.23 -0.98 -78.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484858011.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.883 kcal (2) G-P(sol) polarization free energy of solvation -77.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds