Wall clock time and date at job start Tue Mar 31 2020 23:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.45730 * 2 1 4 4 C 1.53040 * 109.45334 * 240.03652 * 2 1 3 5 5 C 1.53191 * 109.31625 * 178.61856 * 4 2 1 6 6 N 1.46931 * 108.77079 * 54.63546 * 5 4 2 7 7 C 1.34779 * 120.63007 * 126.37424 * 6 5 4 8 8 O 1.21281 * 119.99829 * 185.54900 * 7 6 5 9 9 C 1.50696 * 119.99643 * 5.54627 * 7 6 5 10 10 H 1.09001 * 109.87392 * 304.29342 * 9 7 6 11 11 C 1.54092 * 109.88316 * 65.31148 * 9 7 6 12 12 C 1.54811 * 104.19308 * 121.45138 * 11 9 7 13 13 C 1.54995 * 102.08893 * 20.87990 * 12 11 9 14 14 H 1.08997 * 110.61983 * 81.64335 * 13 12 11 15 15 C 1.50708 * 110.61433 * 204.47943 * 13 12 11 16 16 N 1.34776 * 119.99646 * 294.99562 * 15 13 12 17 17 O 1.21278 * 119.99930 * 115.00769 * 15 13 12 18 18 O 1.43751 * 109.87490 * 183.29571 * 9 7 6 19 19 C 1.46923 * 118.73722 * 306.38475 * 6 5 4 20 20 H 1.08995 * 109.70799 * 293.75609 * 19 6 5 21 21 C 1.53009 * 109.58582 * 173.39984 * 19 6 5 22 22 N 1.46498 * 109.47263 * 180.53841 * 21 19 6 23 23 C 1.36933 * 120.00040 * 174.98002 * 22 21 19 24 24 H 1.08005 * 119.99949 * 359.72351 * 23 22 21 25 25 C 1.38807 * 119.99991 * 180.02562 * 23 22 21 26 26 N 1.31616 * 120.00409 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99750 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47719 * 359.97438 * 27 25 23 29 29 H 1.48505 * 109.47108 * 120.00001 * 27 25 23 30 30 H 1.48507 * 109.47163 * 239.99692 * 27 25 23 31 31 C 1.53038 * 109.46190 * 119.97104 * 2 1 3 32 32 H 1.08997 * 109.47211 * 300.02519 * 1 2 3 33 33 H 1.08999 * 109.47204 * 60.02752 * 1 2 3 34 34 H 1.09005 * 109.46667 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.49319 * 298.57572 * 4 2 1 36 36 H 1.08999 * 109.49863 * 58.66504 * 4 2 1 37 37 H 1.08998 * 109.58672 * 174.42051 * 5 4 2 38 38 H 1.08997 * 109.58474 * 294.70323 * 5 4 2 39 39 H 1.08999 * 110.49180 * 240.12666 * 11 9 7 40 40 H 1.09002 * 110.48806 * 2.77257 * 11 9 7 41 41 H 1.08992 * 110.91162 * 139.08169 * 12 11 9 42 42 H 1.09001 * 110.90587 * 262.64941 * 12 11 9 43 43 H 0.96996 * 120.00163 * 0.02562 * 16 15 13 44 44 H 0.97007 * 119.99518 * 180.02562 * 16 15 13 45 45 H 1.08998 * 109.46607 * 60.53676 * 21 19 6 46 46 H 1.08999 * 109.46973 * 300.54156 * 21 19 6 47 47 H 0.97006 * 119.99959 * 354.98882 * 22 21 19 48 48 H 0.96993 * 120.00485 * 180.02562 * 26 25 23 49 49 H 1.08998 * 109.49594 * 61.41957 * 31 2 1 50 50 H 1.09003 * 109.49546 * 301.32575 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7207 -1.2502 5 6 3.5712 -0.6888 -1.2645 6 7 4.0676 -1.2492 -0.0003 7 6 4.9611 -2.2583 -0.0004 8 8 5.2872 -2.7796 1.0450 9 6 5.5547 -2.7388 -1.2995 10 1 4.7588 -3.0227 -1.9880 11 6 6.4167 -1.6253 -1.9254 12 6 7.8231 -2.2600 -2.0520 13 6 7.5006 -3.7753 -2.0081 14 1 7.1818 -4.1285 -2.9888 15 6 8.6948 -4.5583 -1.5263 16 7 9.8220 -4.5900 -2.2644 17 8 8.6414 -5.1599 -0.4746 18 8 6.4155 -3.8643 -1.0568 19 6 3.5714 -0.6889 1.2640 20 1 3.9145 0.3403 1.3696 21 6 4.0912 -1.5255 2.4349 22 7 3.5845 -0.9723 3.6932 23 6 3.8343 -1.6179 4.8747 24 1 4.4010 -2.5373 4.8784 25 6 3.3538 -1.0940 6.0669 26 7 2.6585 0.0235 6.0619 27 14 3.6952 -1.9744 7.6787 28 1 4.4925 -3.1991 7.4148 29 1 4.4546 -1.0741 8.5833 30 1 2.4093 -2.3501 8.3196 31 6 2.0399 -0.7208 1.2500 32 1 -0.3633 0.5142 0.8897 33 1 -0.3633 0.5134 -0.8902 34 1 -0.3633 -1.0277 0.0005 35 1 1.6973 -1.7555 -1.2384 36 1 1.6570 -0.2206 -2.1399 37 1 3.9413 -1.2847 -2.0987 38 1 3.9142 0.3404 -1.3702 39 1 6.0319 -1.3516 -2.9077 40 1 6.4487 -0.7543 -1.2709 41 1 8.2885 -1.9886 -2.9994 42 1 8.4567 -1.9721 -1.2130 43 1 9.8648 -4.1087 -3.1055 44 1 10.5906 -5.0943 -1.9545 45 1 5.1809 -1.5040 2.4412 46 1 3.7487 -2.5546 2.3263 47 1 3.0719 -0.1488 3.6895 48 1 2.3230 0.3897 6.8951 49 1 1.6976 -1.7556 1.2382 50 1 1.6574 -0.2207 2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489049670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:51 Heat of formation + Delta-G solvation = -124.149422 kcal Electronic energy + Delta-G solvation = -31279.321217 eV Core-core repulsion = 27112.861003 eV Total energy + Delta-G solvation = -4166.460214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.03721 -40.94688 -39.44789 -38.40255 -36.69399 -35.08470 -34.88364 -34.01681 -32.98869 -31.65125 -30.83614 -29.11502 -27.29602 -26.07100 -24.82242 -24.30075 -22.92142 -22.56829 -21.58962 -21.26530 -20.30760 -19.22905 -18.67172 -18.29476 -17.64303 -17.50526 -17.14360 -16.57212 -16.54376 -15.95621 -15.72831 -15.62501 -15.44520 -15.25806 -14.96496 -14.73352 -14.57558 -14.47960 -14.36680 -14.21913 -13.79444 -13.41577 -13.10649 -12.89527 -12.86697 -12.80093 -12.73548 -12.61045 -12.48464 -12.19680 -12.08033 -11.99533 -11.86488 -11.78693 -11.38048 -11.32715 -11.21300 -11.02224 -10.82302 -10.72486 -10.03613 -9.59501 -9.00004 -8.00875 -5.28823 1.39483 1.41214 1.50691 1.52940 1.59668 1.69832 2.25591 2.52052 3.01471 3.30697 3.31769 3.56520 3.73122 3.74735 3.83172 3.87864 3.92850 4.05179 4.08788 4.11542 4.12680 4.25200 4.33574 4.41456 4.58243 4.60616 4.67285 4.70152 4.81649 4.83687 4.91533 4.93630 4.96430 5.08408 5.09883 5.13344 5.18823 5.24459 5.30572 5.41005 5.42272 5.56439 5.58098 5.71988 5.87356 6.22672 6.44142 6.47980 7.25151 7.28557 7.32294 8.01681 8.31399 9.22607 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009142 B = 0.003662 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.888779 B = 7643.468935 C =10296.863988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.082 0.918 4 C -0.124 4.124 5 C 0.098 3.902 6 N -0.598 5.598 7 C 0.488 3.512 8 O -0.567 6.567 9 C 0.061 3.939 10 H 0.134 0.866 11 C -0.136 4.136 12 C -0.135 4.135 13 C 0.049 3.951 14 H 0.149 0.851 15 C 0.511 3.489 16 N -0.823 5.823 17 O -0.593 6.593 18 O -0.373 6.373 19 C 0.152 3.848 20 H 0.075 0.925 21 C 0.179 3.821 22 N -0.743 5.743 23 C -0.247 4.247 24 H 0.054 0.946 25 C -0.068 4.068 26 N -0.963 5.963 27 Si 0.973 3.027 28 H -0.279 1.279 29 H -0.284 1.284 30 H -0.284 1.284 31 C -0.111 4.111 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.150 0.850 40 H 0.075 0.925 41 H 0.150 0.850 42 H 0.054 0.946 43 H 0.424 0.576 44 H 0.410 0.590 45 H 0.009 0.991 46 H 0.003 0.997 47 H 0.375 0.625 48 H 0.254 0.746 49 H 0.040 0.960 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.590 1.827 -35.099 35.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 H 0.100 0.900 4 C -0.162 4.162 5 C -0.022 4.022 6 N -0.334 5.334 7 C 0.276 3.724 8 O -0.444 6.444 9 C 0.000 4.000 10 H 0.151 0.849 11 C -0.173 4.173 12 C -0.172 4.172 13 C -0.012 4.012 14 H 0.166 0.834 15 C 0.295 3.705 16 N -0.390 5.390 17 O -0.472 6.472 18 O -0.291 6.291 19 C 0.048 3.952 20 H 0.093 0.907 21 C 0.053 3.947 22 N -0.388 5.388 23 C -0.379 4.379 24 H 0.072 0.928 25 C -0.261 4.261 26 N -0.614 5.614 27 Si 0.801 3.199 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.210 1.210 31 C -0.149 4.149 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.114 0.886 39 H 0.168 0.832 40 H 0.094 0.906 41 H 0.167 0.833 42 H 0.073 0.927 43 H 0.256 0.744 44 H 0.242 0.758 45 H 0.027 0.973 46 H 0.021 0.979 47 H 0.208 0.792 48 H 0.063 0.937 49 H 0.059 0.941 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.606 0.922 -33.644 34.299 hybrid contribution 0.273 -0.440 1.853 1.924 sum 6.878 0.482 -31.790 32.530 Atomic orbital electron populations 1.21784 0.94401 1.01578 1.02244 1.21147 0.96332 0.99675 0.93490 0.89962 1.22013 0.94659 1.01194 0.98362 1.22288 0.94766 1.01238 0.83914 1.48181 1.42530 1.34915 1.07743 1.21509 0.79389 0.79664 0.91829 1.90882 1.61758 1.56909 1.34840 1.22980 0.95641 0.88605 0.92730 0.84881 1.23110 0.93547 0.96392 1.04292 1.23193 0.97919 0.90378 1.05728 1.23495 0.85899 0.97207 0.94551 0.83351 1.20838 0.85750 0.80290 0.83606 1.43488 1.14483 1.54881 1.26153 1.90822 1.83953 1.46574 1.25878 1.89206 1.37303 1.44618 1.57977 1.21204 0.94700 0.96436 0.82851 0.90733 1.21022 0.95057 0.93963 0.84652 1.42686 1.65190 1.28701 1.02212 1.19489 1.27418 1.04482 0.86469 0.92796 1.25488 1.01070 0.98798 1.00707 1.69792 1.42511 1.22441 1.26656 0.85096 0.77355 0.77689 0.79758 1.20450 1.21007 1.21006 1.21867 0.93312 1.00286 0.99456 0.93986 0.89958 0.93506 0.92402 0.86627 0.86197 0.88578 0.83228 0.90643 0.83255 0.92690 0.74365 0.75822 0.97285 0.97863 0.79230 0.93674 0.94078 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.19 71.98 0.66 -2.20 16 2 C -0.09 -1.89 2.68 -10.77 -0.03 -1.92 16 3 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.12 -1.77 5.36 30.67 0.16 -1.60 16 5 C 0.10 1.34 5.72 86.36 0.49 1.83 16 6 N -0.60 -16.69 2.97 -795.02 -2.36 -19.05 16 7 C 0.49 16.46 6.77 87.66 0.59 17.06 16 8 O -0.57 -27.95 11.93 15.68 0.19 -27.77 16 9 C 0.06 1.29 2.94 30.22 0.09 1.38 16 10 H 0.13 1.71 7.24 -2.39 -0.02 1.70 16 11 C -0.14 -1.38 5.28 31.58 0.17 -1.22 16 12 C -0.13 -1.33 6.57 31.90 0.21 -1.12 16 13 C 0.05 0.80 3.76 30.53 0.11 0.92 16 14 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 15 C 0.51 11.46 7.48 87.66 0.66 12.11 16 16 N -0.82 -7.81 8.86 -173.53 -1.54 -9.35 16 17 O -0.59 -22.79 17.40 15.17 0.26 -22.53 16 18 O -0.37 -11.20 10.04 -121.20 -1.22 -12.42 16 19 C 0.15 5.65 3.05 44.98 0.14 5.78 16 20 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 21 C 0.18 9.33 4.11 86.38 0.35 9.68 16 22 N -0.74 -44.04 5.28 -343.45 -1.81 -45.85 16 23 C -0.25 -16.08 9.99 84.03 0.84 -15.24 16 24 H 0.05 3.62 7.83 -2.91 -0.02 3.60 16 25 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 26 N -0.96 -62.46 13.06 21.65 0.28 -62.18 16 27 Si 0.97 51.17 29.55 68.60 2.03 53.20 16 28 H -0.28 -14.54 7.11 99.48 0.71 -13.84 16 29 H -0.28 -14.45 7.11 99.48 0.71 -13.75 16 30 H -0.28 -14.44 7.11 99.48 0.71 -13.73 16 31 C -0.11 -3.76 4.39 30.67 0.13 -3.63 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.12 0.71 5.19 -2.39 -0.01 0.69 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.15 -0.17 7.94 -2.39 -0.02 -0.19 16 40 H 0.07 1.05 7.68 -2.39 -0.02 1.03 16 41 H 0.15 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.05 0.91 8.05 -2.39 -0.02 0.89 16 43 H 0.42 -0.13 8.83 -92.71 -0.82 -0.95 16 44 H 0.41 3.69 8.93 -92.70 -0.83 2.87 16 45 H 0.01 0.54 6.49 -2.39 -0.02 0.53 16 46 H 0.00 0.20 6.99 -2.39 -0.02 0.18 16 47 H 0.37 22.26 6.75 -92.70 -0.63 21.63 16 48 H 0.25 15.71 8.31 -92.71 -0.77 14.94 16 49 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.05 2.13 7.16 -2.39 -0.02 2.11 16 Total: -1.00 -107.67 390.16 -0.41 -108.08 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -1.29 Total: 19.89 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 5.05 Total: 17.98 kcal Atomic # 7 Polarization: -131.00 SS G_CDS: -5.43 Total: -136.43 kcal Atomic # 8 Polarization: -61.95 SS G_CDS: -0.77 Total: -62.72 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.03 Total: 53.20 kcal Total: -107.67 -0.41 -108.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489049670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.068 kcal (2) G-P(sol) polarization free energy of solvation -107.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds