Wall clock time and date at job start Tue Mar 31 2020 23:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.49633 * 2 1 4 4 C 1.53032 * 109.49668 * 239.93315 * 2 1 3 5 5 C 1.53045 * 109.52878 * 301.38599 * 4 2 1 6 6 C 1.53187 * 109.31376 * 298.62237 * 5 4 2 7 7 N 1.46919 * 108.76898 * 54.65166 * 6 5 4 8 8 C 1.34778 * 120.63251 * 126.40900 * 7 6 5 9 9 O 1.21281 * 119.99779 * 185.13198 * 8 7 6 10 10 C 1.50691 * 119.99779 * 5.12759 * 8 7 6 11 11 H 1.08999 * 110.50786 * 40.70737 * 10 8 7 12 12 C 1.54095 * 110.56831 * 277.96196 * 10 8 7 13 13 O 1.46049 * 103.84178 * 241.46831 * 12 10 8 14 14 C 1.33764 * 109.51228 * 359.88046 * 13 12 10 15 15 O 1.21513 * 123.07339 * 180.10130 * 14 13 12 16 16 N 1.34005 * 113.86083 * 0.07828 * 14 13 12 17 17 C 1.46931 * 118.73703 * 306.38325 * 7 6 5 18 18 H 1.09004 * 109.70422 * 293.75168 * 17 7 6 19 19 C 1.53001 * 109.58576 * 173.39672 * 17 7 6 20 20 C 1.52998 * 109.46949 * 179.55430 * 19 17 7 21 21 C 1.53005 * 109.46819 * 185.20585 * 20 19 17 22 22 N 1.46502 * 109.47155 * 179.97438 * 21 20 19 23 23 C 1.36932 * 120.00231 * 180.02562 * 22 21 20 24 24 H 1.08000 * 120.00026 * 0.02562 * 23 22 21 25 25 C 1.38816 * 120.00250 * 180.02562 * 23 22 21 26 26 N 1.31611 * 119.99982 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99727 * 0.02562 * 25 23 22 28 28 H 1.48499 * 109.47535 * 89.99994 * 27 25 23 29 29 H 1.48504 * 109.47137 * 210.00091 * 27 25 23 30 30 H 1.48501 * 109.47416 * 329.99658 * 27 25 23 31 31 H 1.08993 * 109.47347 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47330 * 300.07044 * 1 2 3 33 33 H 1.09007 * 109.47023 * 60.06663 * 1 2 3 34 34 H 1.09001 * 109.46314 * 61.40345 * 4 2 1 35 35 H 1.09004 * 109.45976 * 181.37990 * 4 2 1 36 36 H 1.09004 * 109.49384 * 58.58089 * 5 4 2 37 37 H 1.08999 * 109.50138 * 178.67737 * 5 4 2 38 38 H 1.09007 * 109.59511 * 294.86350 * 6 5 4 39 39 H 1.08998 * 109.58715 * 174.43617 * 6 5 4 40 40 H 1.09001 * 110.51466 * 0.05622 * 12 10 8 41 41 H 1.08997 * 110.52425 * 122.79726 * 12 10 8 42 42 H 0.96999 * 125.56360 * 180.02562 * 16 14 13 43 43 H 1.09001 * 109.47144 * 299.55611 * 19 17 7 44 44 H 1.08998 * 109.47203 * 59.55470 * 19 17 7 45 45 H 1.09001 * 109.47245 * 305.20531 * 20 19 17 46 46 H 1.08997 * 109.47368 * 65.20935 * 20 19 17 47 47 H 1.08997 * 109.47438 * 300.00419 * 21 20 19 48 48 H 1.09007 * 109.46876 * 60.00091 * 21 20 19 49 49 H 0.97006 * 119.99969 * 0.02562 * 22 21 20 50 50 H 0.97004 * 120.00146 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2485 5 6 1.5034 -2.1556 -1.2659 6 6 2.0152 -2.9038 -0.0310 7 7 1.6527 -2.1382 1.1694 8 6 0.9764 -2.7224 2.1783 9 8 0.6018 -2.0586 3.1217 10 6 0.6858 -4.2004 2.1341 11 1 1.5486 -4.7481 1.7550 12 6 -0.5573 -4.4820 1.2681 13 8 -1.5000 -5.0963 2.1993 14 6 -0.9403 -5.1799 3.4114 15 8 -1.5105 -5.6548 4.3737 16 7 0.3067 -4.6926 3.4675 17 6 2.0419 -0.7236 1.2494 18 1 3.1279 -0.6435 1.2990 19 6 1.4235 -0.0913 2.4979 20 6 1.8395 1.3784 2.5845 21 6 1.3297 1.9761 3.8975 22 7 1.7286 3.3834 3.9808 23 6 1.3822 4.1296 5.0755 24 1 0.8154 3.6806 5.8777 25 6 1.7597 5.4631 5.1542 26 7 1.4272 6.1801 6.2066 27 14 2.7394 6.2399 3.7664 28 1 1.8072 6.8204 2.7668 29 1 3.6086 7.3123 4.3139 30 1 3.5816 5.2046 3.1151 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5149 0.8894 33 1 -0.3633 0.5128 -0.8906 34 1 1.6983 -0.1956 -2.1389 35 1 3.1305 -0.7439 -1.2355 36 1 0.4136 -2.1356 -1.2536 37 1 1.8482 -2.6626 -2.1671 38 1 3.0992 -3.0035 -0.0872 39 1 1.5571 -3.8918 0.0136 40 1 -0.9636 -3.5525 0.8694 41 1 -0.3119 -5.1708 0.4598 42 1 0.8680 -4.6686 4.2582 43 1 0.3371 -0.1587 2.4392 44 1 1.7729 -0.6207 3.3844 45 1 2.9265 1.4510 2.5501 46 1 1.4119 1.9272 1.7454 47 1 0.2428 1.9035 3.9321 48 1 1.7574 1.4274 4.7367 49 1 2.2380 3.7866 3.2605 50 1 1.6906 7.1121 6.2615 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489064125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:04 Heat of formation + Delta-G solvation = -76.496909 kcal Electronic energy + Delta-G solvation = -31241.776147 eV Core-core repulsion = 27077.382301 eV Total energy + Delta-G solvation = -4164.393846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.34305 -40.92262 -38.27555 -37.46582 -36.00194 -35.11581 -34.23153 -33.47954 -31.64408 -30.47286 -29.99537 -27.49167 -26.62111 -25.18875 -24.44645 -23.18105 -22.80782 -21.54906 -21.16123 -20.54978 -18.96176 -18.62982 -18.07006 -17.48014 -17.28901 -16.66127 -16.06834 -15.98031 -15.55898 -14.96144 -14.79230 -14.66934 -14.62443 -14.49855 -14.22751 -14.06417 -13.90670 -13.71129 -13.64976 -12.98361 -12.82824 -12.75947 -12.41729 -12.09961 -12.04769 -11.80878 -11.47514 -11.37706 -11.24955 -11.14896 -11.07694 -10.98720 -10.89020 -10.79862 -10.33714 -10.26971 -10.19480 -10.05457 -9.53505 -9.19260 -8.91778 -8.83328 -7.16091 -5.71299 -3.06001 1.93986 2.04059 2.30484 2.50484 3.05303 3.39408 3.41723 3.46440 3.46975 3.68222 4.00855 4.13142 4.33230 4.40080 4.41910 4.54923 4.57476 4.63280 4.74293 4.75584 4.85992 4.95164 5.14670 5.20157 5.31582 5.35993 5.38097 5.39264 5.54184 5.56442 5.65928 5.72830 5.76338 5.82300 5.96950 6.02687 6.09637 6.17105 6.29406 6.32625 6.33219 6.64997 6.75826 6.86989 6.90945 6.94090 7.63653 7.72537 8.06968 8.48228 9.27963 10.00304 10.21047 11.47553 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012968 B = 0.002894 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.677392 B = 9672.123754 C =11336.687788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.116 4.116 5 C -0.138 4.138 6 C 0.102 3.898 7 N -0.601 5.601 8 C 0.499 3.501 9 O -0.494 6.494 10 C 0.072 3.928 11 H 0.124 0.876 12 C 0.055 3.945 13 O -0.323 6.323 14 C 0.652 3.348 15 O -0.515 6.515 16 N -0.709 5.709 17 C 0.153 3.847 18 H 0.075 0.925 19 C -0.106 4.106 20 C -0.135 4.135 21 C 0.161 3.839 22 N -0.758 5.758 23 C -0.241 4.241 24 H 0.089 0.911 25 C 0.001 3.999 26 N -0.936 5.936 27 Si 0.886 3.114 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.442 0.558 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.025 0.975 48 H 0.025 0.975 49 H 0.359 0.641 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.401 -26.144 -22.253 34.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 H 0.107 0.893 4 C -0.154 4.154 5 C -0.176 4.176 6 C -0.021 4.021 7 N -0.336 5.336 8 C 0.283 3.717 9 O -0.367 6.367 10 C -0.038 4.038 11 H 0.142 0.858 12 C -0.021 4.021 13 O -0.233 6.233 14 C 0.404 3.596 15 O -0.398 6.398 16 N -0.382 5.382 17 C 0.051 3.949 18 H 0.093 0.907 19 C -0.144 4.144 20 C -0.174 4.174 21 C 0.034 3.966 22 N -0.404 5.404 23 C -0.371 4.371 24 H 0.107 0.893 25 C -0.194 4.194 26 N -0.585 5.585 27 Si 0.717 3.283 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.137 0.863 42 H 0.286 0.714 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.043 0.957 48 H 0.043 0.957 49 H 0.191 0.809 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.438 -26.069 -21.205 33.693 hybrid contribution 1.300 0.872 -0.812 1.764 sum 3.738 -25.197 -22.016 33.669 Atomic orbital electron populations 1.21894 0.94621 1.01554 1.02378 1.21586 0.96960 1.00151 0.93877 0.89332 1.21565 1.00581 0.95097 0.98128 1.21978 1.01915 0.96609 0.97133 1.21846 1.01010 0.94583 0.84612 1.48133 1.55953 1.11855 1.17634 1.20507 0.79131 0.88764 0.83317 1.90921 1.49311 1.62614 1.33903 1.22408 1.00581 0.95016 0.85804 0.85838 1.24319 0.85474 1.00695 0.91575 1.87364 1.40206 1.75844 1.19849 1.18400 0.80654 0.77718 0.82839 1.91114 1.65641 1.49562 1.33505 1.45681 1.16524 1.63918 1.12118 1.21502 0.98776 0.78106 0.96482 0.90677 1.22125 1.01994 0.94240 0.96038 1.21945 1.00655 0.95544 0.99248 1.20552 0.97102 0.84996 0.93984 1.42746 1.67090 1.07737 1.22790 1.19111 1.28768 0.92294 0.96917 0.89271 1.24684 1.00926 0.96398 0.97437 1.69707 1.51472 1.08244 1.29072 0.86513 0.80284 0.78976 0.82567 1.21145 1.21783 1.20402 0.92997 0.91522 0.92809 0.91401 0.91688 0.90845 0.90517 0.90612 0.90239 0.87229 0.86330 0.71425 0.90178 0.89670 0.92511 0.92219 0.95674 0.95743 0.80855 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.20 37.16 0.30 -0.96 16 2 C -0.11 -0.83 2.32 -90.50 -0.21 -1.04 16 3 H 0.09 0.79 6.90 -51.93 -0.36 0.44 16 4 C -0.12 -0.60 5.43 -26.69 -0.14 -0.74 16 5 C -0.14 -0.43 5.74 -26.61 -0.15 -0.58 16 6 C 0.10 0.28 6.15 -3.72 -0.02 0.26 16 7 N -0.60 -3.89 2.41 -165.22 -0.40 -4.29 16 8 C 0.50 4.11 6.72 -10.99 -0.07 4.04 16 9 O -0.49 -6.41 11.98 5.56 0.07 -6.34 16 10 C 0.07 0.38 3.15 -68.19 -0.21 0.17 16 11 H 0.12 0.19 7.16 -51.93 -0.37 -0.18 16 12 C 0.05 0.25 7.02 37.73 0.26 0.51 16 13 O -0.32 -3.15 11.10 -37.81 -0.42 -3.57 16 14 C 0.65 7.64 9.16 53.71 0.49 8.13 16 15 O -0.51 -8.26 18.04 -19.12 -0.34 -8.61 16 16 N -0.71 -5.87 5.64 -59.35 -0.33 -6.20 16 17 C 0.15 1.36 2.71 -67.60 -0.18 1.17 16 18 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 19 C -0.11 -1.36 2.67 -26.73 -0.07 -1.43 16 20 C -0.14 -2.07 4.86 -26.73 -0.13 -2.20 16 21 C 0.16 3.32 6.26 -4.04 -0.03 3.30 16 22 N -0.76 -18.98 5.41 -59.90 -0.32 -19.30 16 23 C -0.24 -7.17 10.47 -15.06 -0.16 -7.33 16 24 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 25 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 16 26 N -0.94 -30.35 13.97 55.49 0.78 -29.57 16 27 Si 0.89 22.60 27.74 -169.99 -4.71 17.89 16 28 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 30 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 31 H 0.05 0.40 5.97 -51.93 -0.31 0.09 16 32 H 0.07 0.74 6.34 -51.93 -0.33 0.41 16 33 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.26 6.33 -51.93 -0.33 -0.07 16 37 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.08 0.01 5.22 -51.93 -0.27 -0.26 16 40 H 0.11 0.47 7.72 -51.93 -0.40 0.07 16 41 H 0.12 0.06 8.06 -51.93 -0.42 -0.36 16 42 H 0.44 3.28 8.96 -40.82 -0.37 2.92 16 43 H 0.08 1.14 5.23 -51.93 -0.27 0.87 16 44 H 0.08 1.26 6.40 -51.93 -0.33 0.92 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.88 6.88 -51.93 -0.36 0.52 16 47 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.36 8.62 5.53 -40.82 -0.23 8.39 16 50 H 0.26 7.93 8.31 -40.82 -0.34 7.60 16 LS Contribution 379.74 15.07 5.72 5.72 Total: -1.00 -39.11 379.74 -8.13 -47.24 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.74 Total: 3.81 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -0.42 Total: 3.24 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.28 Total: -59.37 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.70 Total: -18.53 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -39.11 -8.13 -47.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489064125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.255 kcal (2) G-P(sol) polarization free energy of solvation -39.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds