Wall clock time and date at job start Tue Mar 31 2020 23:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.49633 * 2 1 4 4 C 1.53032 * 109.49668 * 239.93315 * 2 1 3 5 5 C 1.53045 * 109.52878 * 301.38599 * 4 2 1 6 6 C 1.53187 * 109.31376 * 298.62237 * 5 4 2 7 7 N 1.46919 * 108.76898 * 54.65166 * 6 5 4 8 8 C 1.34778 * 120.63251 * 126.40900 * 7 6 5 9 9 O 1.21281 * 119.99779 * 185.13198 * 8 7 6 10 10 C 1.50691 * 119.99779 * 5.12759 * 8 7 6 11 11 H 1.08999 * 110.50786 * 40.70737 * 10 8 7 12 12 C 1.54095 * 110.56831 * 277.96196 * 10 8 7 13 13 O 1.46049 * 103.84178 * 241.46831 * 12 10 8 14 14 C 1.33764 * 109.51228 * 359.88046 * 13 12 10 15 15 O 1.21513 * 123.07339 * 180.10130 * 14 13 12 16 16 N 1.34005 * 113.86083 * 0.07828 * 14 13 12 17 17 C 1.46931 * 118.73703 * 306.38325 * 7 6 5 18 18 H 1.09004 * 109.70422 * 293.75168 * 17 7 6 19 19 C 1.53001 * 109.58576 * 173.39672 * 17 7 6 20 20 C 1.52998 * 109.46949 * 179.55430 * 19 17 7 21 21 C 1.53005 * 109.46819 * 185.20585 * 20 19 17 22 22 N 1.46502 * 109.47155 * 179.97438 * 21 20 19 23 23 C 1.36932 * 120.00231 * 180.02562 * 22 21 20 24 24 H 1.08000 * 120.00026 * 0.02562 * 23 22 21 25 25 C 1.38816 * 120.00250 * 180.02562 * 23 22 21 26 26 N 1.31611 * 119.99982 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99727 * 0.02562 * 25 23 22 28 28 H 1.48499 * 109.47535 * 89.99994 * 27 25 23 29 29 H 1.48504 * 109.47137 * 210.00091 * 27 25 23 30 30 H 1.48501 * 109.47416 * 329.99658 * 27 25 23 31 31 H 1.08993 * 109.47347 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47330 * 300.07044 * 1 2 3 33 33 H 1.09007 * 109.47023 * 60.06663 * 1 2 3 34 34 H 1.09001 * 109.46314 * 61.40345 * 4 2 1 35 35 H 1.09004 * 109.45976 * 181.37990 * 4 2 1 36 36 H 1.09004 * 109.49384 * 58.58089 * 5 4 2 37 37 H 1.08999 * 109.50138 * 178.67737 * 5 4 2 38 38 H 1.09007 * 109.59511 * 294.86350 * 6 5 4 39 39 H 1.08998 * 109.58715 * 174.43617 * 6 5 4 40 40 H 1.09001 * 110.51466 * 0.05622 * 12 10 8 41 41 H 1.08997 * 110.52425 * 122.79726 * 12 10 8 42 42 H 0.96999 * 125.56360 * 180.02562 * 16 14 13 43 43 H 1.09001 * 109.47144 * 299.55611 * 19 17 7 44 44 H 1.08998 * 109.47203 * 59.55470 * 19 17 7 45 45 H 1.09001 * 109.47245 * 305.20531 * 20 19 17 46 46 H 1.08997 * 109.47368 * 65.20935 * 20 19 17 47 47 H 1.08997 * 109.47438 * 300.00419 * 21 20 19 48 48 H 1.09007 * 109.46876 * 60.00091 * 21 20 19 49 49 H 0.97006 * 119.99969 * 0.02562 * 22 21 20 50 50 H 0.97004 * 120.00146 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2485 5 6 1.5034 -2.1556 -1.2659 6 6 2.0152 -2.9038 -0.0310 7 7 1.6527 -2.1382 1.1694 8 6 0.9764 -2.7224 2.1783 9 8 0.6018 -2.0586 3.1217 10 6 0.6858 -4.2004 2.1341 11 1 1.5486 -4.7481 1.7550 12 6 -0.5573 -4.4820 1.2681 13 8 -1.5000 -5.0963 2.1993 14 6 -0.9403 -5.1799 3.4114 15 8 -1.5105 -5.6548 4.3737 16 7 0.3067 -4.6926 3.4675 17 6 2.0419 -0.7236 1.2494 18 1 3.1279 -0.6435 1.2990 19 6 1.4235 -0.0913 2.4979 20 6 1.8395 1.3784 2.5845 21 6 1.3297 1.9761 3.8975 22 7 1.7286 3.3834 3.9808 23 6 1.3822 4.1296 5.0755 24 1 0.8154 3.6806 5.8777 25 6 1.7597 5.4631 5.1542 26 7 1.4272 6.1801 6.2066 27 14 2.7394 6.2399 3.7664 28 1 1.8072 6.8204 2.7668 29 1 3.6086 7.3123 4.3139 30 1 3.5816 5.2046 3.1151 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5149 0.8894 33 1 -0.3633 0.5128 -0.8906 34 1 1.6983 -0.1956 -2.1389 35 1 3.1305 -0.7439 -1.2355 36 1 0.4136 -2.1356 -1.2536 37 1 1.8482 -2.6626 -2.1671 38 1 3.0992 -3.0035 -0.0872 39 1 1.5571 -3.8918 0.0136 40 1 -0.9636 -3.5525 0.8694 41 1 -0.3119 -5.1708 0.4598 42 1 0.8680 -4.6686 4.2582 43 1 0.3371 -0.1587 2.4392 44 1 1.7729 -0.6207 3.3844 45 1 2.9265 1.4510 2.5501 46 1 1.4119 1.9272 1.7454 47 1 0.2428 1.9035 3.9321 48 1 1.7574 1.4274 4.7367 49 1 2.2380 3.7866 3.2605 50 1 1.6906 7.1121 6.2615 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489064125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:03 Heat of formation + Delta-G solvation = -107.572324 kcal Electronic energy + Delta-G solvation = -31243.123678 eV Core-core repulsion = 27077.382301 eV Total energy + Delta-G solvation = -4165.741377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.99260 -41.58380 -38.97385 -38.33269 -37.47120 -35.97971 -35.23116 -34.41912 -33.38632 -31.31049 -31.01716 -28.44568 -27.31326 -26.20619 -24.97872 -24.48594 -23.56251 -23.06363 -22.03868 -21.41609 -19.66649 -19.51801 -19.26690 -18.63591 -17.98067 -17.37067 -16.90911 -16.74408 -16.55728 -16.21844 -15.87935 -15.58240 -15.40773 -15.27470 -15.17349 -15.01801 -14.81121 -14.75014 -14.42536 -14.12751 -13.88900 -13.68950 -13.38657 -13.25017 -12.97942 -12.83134 -12.74549 -12.44687 -12.20327 -12.10724 -12.05121 -11.96521 -11.90246 -11.83823 -11.72956 -11.57893 -11.29621 -11.15382 -11.00624 -10.94595 -9.92181 -9.51598 -9.36664 -8.07515 -5.42809 1.30314 1.33889 1.39785 1.40065 1.47677 1.61527 1.87363 2.45357 2.53938 3.04531 3.19356 3.22863 3.53894 3.71571 3.79054 3.82696 3.93156 3.99327 4.14149 4.17312 4.22882 4.29638 4.36218 4.42471 4.49004 4.58515 4.63300 4.69710 4.71437 4.82989 4.87180 4.92833 5.00364 5.04301 5.09807 5.20757 5.26131 5.29704 5.36633 5.44264 5.50392 5.58380 5.62956 5.69102 5.75221 6.05990 6.16418 6.37947 6.87242 7.02383 7.10418 7.76906 8.00329 9.14508 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012968 B = 0.002894 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.677392 B = 9672.123754 C =11336.687788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 H 0.075 0.925 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.094 3.906 7 N -0.592 5.592 8 C 0.493 3.507 9 O -0.554 6.554 10 C 0.079 3.921 11 H 0.178 0.822 12 C 0.050 3.950 13 O -0.340 6.340 14 C 0.648 3.352 15 O -0.574 6.574 16 N -0.703 5.703 17 C 0.158 3.842 18 H 0.085 0.915 19 C -0.091 4.091 20 C -0.120 4.120 21 C 0.158 3.842 22 N -0.757 5.757 23 C -0.247 4.247 24 H 0.046 0.954 25 C -0.067 4.067 26 N -0.986 5.986 27 Si 0.966 3.034 28 H -0.274 1.274 29 H -0.291 1.291 30 H -0.247 1.247 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.175 0.825 42 H 0.443 0.557 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.008 0.992 48 H 0.010 0.990 49 H 0.368 0.632 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.956 -28.011 -27.300 39.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 H 0.094 0.906 4 C -0.151 4.151 5 C -0.174 4.174 6 C -0.027 4.027 7 N -0.325 5.325 8 C 0.279 3.721 9 O -0.432 6.432 10 C -0.030 4.030 11 H 0.195 0.805 12 C -0.024 4.024 13 O -0.249 6.249 14 C 0.401 3.599 15 O -0.462 6.462 16 N -0.374 5.374 17 C 0.055 3.945 18 H 0.103 0.897 19 C -0.130 4.130 20 C -0.158 4.158 21 C 0.032 3.968 22 N -0.403 5.403 23 C -0.378 4.378 24 H 0.064 0.936 25 C -0.258 4.258 26 N -0.636 5.636 27 Si 0.792 3.208 28 H -0.200 1.200 29 H -0.218 1.218 30 H -0.172 1.172 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.192 0.808 42 H 0.287 0.713 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.026 0.974 48 H 0.028 0.972 49 H 0.202 0.798 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.033 -27.977 -26.352 38.761 hybrid contribution 0.453 1.476 0.776 1.728 sum 5.487 -26.501 -25.576 37.236 Atomic orbital electron populations 1.21857 0.95525 1.01801 1.00976 1.21558 0.96091 0.99865 0.94891 0.90637 1.21552 1.01083 0.96243 0.96201 1.21997 1.01722 0.95298 0.98335 1.22264 1.02595 0.95453 0.82352 1.48177 1.54829 1.10980 1.18544 1.21085 0.78344 0.89939 0.82738 1.90919 1.51837 1.64188 1.36239 1.22753 1.02880 0.93037 0.84363 0.80512 1.24890 0.83904 1.02191 0.91442 1.87320 1.41841 1.76040 1.19725 1.18569 0.81133 0.77357 0.82834 1.91053 1.67190 1.52284 1.35693 1.45715 1.15370 1.62668 1.13689 1.21284 0.98840 0.79684 0.94670 0.89698 1.21882 1.00962 0.92444 0.97673 1.21815 1.01024 0.97050 0.95950 1.20685 0.96141 0.83138 0.96832 1.42696 1.67091 1.08938 1.21600 1.19051 1.28299 0.93082 0.97332 0.93599 1.25662 1.02509 0.96814 1.00800 1.69912 1.53118 1.08701 1.31834 0.85255 0.78722 0.78191 0.78678 1.19984 1.21764 1.17151 0.91979 0.94890 0.92165 0.91220 0.90836 0.91158 0.87838 0.88791 0.86692 0.87024 0.80807 0.71270 0.92151 0.91912 0.91374 0.91300 0.97375 0.97200 0.79792 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.20 71.98 0.59 -1.73 16 2 C -0.10 -1.40 2.32 -10.72 -0.02 -1.43 16 3 H 0.08 1.21 6.90 -2.39 -0.02 1.19 16 4 C -0.11 -0.70 5.43 30.62 0.17 -0.54 16 5 C -0.14 -0.11 5.74 30.67 0.18 0.06 16 6 C 0.09 -0.02 6.15 86.36 0.53 0.51 16 7 N -0.59 -5.78 2.41 -795.04 -1.92 -7.70 16 8 C 0.49 7.21 6.72 87.65 0.59 7.80 16 9 O -0.55 -14.79 11.98 -3.03 -0.04 -14.83 16 10 C 0.08 0.56 3.15 44.50 0.14 0.70 16 11 H 0.18 -0.56 7.16 -2.39 -0.02 -0.58 16 12 C 0.05 0.26 7.02 72.35 0.51 0.76 16 13 O -0.34 -6.20 11.10 -47.25 -0.52 -6.73 16 14 C 0.65 15.29 9.16 129.91 1.19 16.48 16 15 O -0.57 -19.47 18.04 19.64 0.35 -19.11 16 16 N -0.70 -10.98 5.64 -573.41 -3.24 -14.22 16 17 C 0.16 2.49 2.71 44.97 0.12 2.61 16 18 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 19 C -0.09 -2.39 2.67 30.59 0.08 -2.30 16 20 C -0.12 -3.67 4.86 30.60 0.15 -3.52 16 21 C 0.16 6.84 6.26 86.38 0.54 7.38 16 22 N -0.76 -38.44 5.41 -343.44 -1.86 -40.30 16 23 C -0.25 -15.25 10.47 84.04 0.88 -14.37 16 24 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 25 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 26 N -0.99 -65.85 13.97 21.65 0.30 -65.55 16 27 Si 0.97 46.52 27.74 68.60 1.90 48.43 16 28 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 29 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 30 H -0.25 -10.57 6.52 99.48 0.65 -9.92 16 31 H 0.06 0.84 5.97 -2.39 -0.01 0.83 16 32 H 0.03 0.75 6.34 -2.39 -0.02 0.73 16 33 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.07 0.15 6.33 -2.38 -0.02 0.13 16 37 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.09 -0.22 8.14 -2.38 -0.02 -0.24 16 39 H 0.12 -0.81 5.22 -2.39 -0.01 -0.83 16 40 H 0.11 0.57 7.72 -2.39 -0.02 0.55 16 41 H 0.17 -0.99 8.06 -2.39 -0.02 -1.01 16 42 H 0.44 6.55 8.96 -92.71 -0.83 5.72 16 43 H 0.06 1.83 5.23 -2.39 -0.01 1.81 16 44 H 0.06 1.94 6.40 -2.39 -0.02 1.92 16 45 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.07 1.99 6.88 -2.39 -0.02 1.97 16 47 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 48 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 49 H 0.37 17.19 5.53 -92.70 -0.51 16.68 16 50 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 Total: -1.00 -94.38 379.74 0.67 -93.70 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -0.42 Total: 17.55 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 6.11 Total: 8.76 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -6.71 Total: -127.77 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.21 Total: -40.67 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.90 Total: 48.43 kcal Total: -94.38 0.67 -93.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489064125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.869 kcal (2) G-P(sol) polarization free energy of solvation -94.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds