Wall clock time and date at job start Tue Mar 31 2020 23:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.52261 * 2 1 4 4 C 1.53046 * 109.49699 * 239.92737 * 2 1 3 5 5 C 1.53044 * 109.53516 * 301.41271 * 4 2 1 6 6 C 1.53187 * 109.31490 * 298.63268 * 5 4 2 7 7 N 1.46928 * 108.77238 * 54.63798 * 6 5 4 8 8 C 1.34778 * 120.63196 * 126.37057 * 7 6 5 9 9 O 1.21280 * 120.00400 * 174.61745 * 8 7 6 10 10 C 1.50697 * 119.99792 * 354.61682 * 8 7 6 11 11 H 1.09005 * 110.62181 * 317.18101 * 10 8 7 12 12 C 1.54089 * 110.56560 * 80.00010 * 10 8 7 13 13 O 1.45707 * 104.00975 * 118.57029 * 12 10 8 14 14 C 1.33772 * 109.47577 * 0.02562 * 13 12 10 15 15 O 1.21506 * 123.07226 * 179.97438 * 14 13 12 16 16 N 1.34007 * 113.85333 * 359.97438 * 14 13 12 17 17 C 1.46930 * 118.74063 * 306.64161 * 7 6 5 18 18 H 1.08996 * 109.58538 * 293.57445 * 17 7 6 19 19 C 1.52996 * 109.58735 * 173.14610 * 17 7 6 20 20 C 1.53002 * 109.47015 * 181.88186 * 19 17 7 21 21 C 1.53001 * 109.47105 * 185.10503 * 20 19 17 22 22 N 1.46497 * 109.47162 * 180.02562 * 21 20 19 23 23 C 1.36938 * 120.00220 * 180.02562 * 22 21 20 24 24 H 1.07999 * 119.99682 * 359.97438 * 23 22 21 25 25 C 1.38812 * 120.00013 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00326 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 119.99775 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47440 * 59.99426 * 27 25 23 29 29 H 1.48505 * 109.46940 * 179.97438 * 27 25 23 30 30 H 1.48507 * 109.46684 * 299.99163 * 27 25 23 31 31 H 1.09001 * 109.47208 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47015 * 300.07298 * 1 2 3 33 33 H 1.09001 * 109.47598 * 60.07507 * 1 2 3 34 34 H 1.08998 * 109.45919 * 181.39044 * 4 2 1 35 35 H 1.09000 * 109.44855 * 61.42657 * 4 2 1 36 36 H 1.09004 * 109.49699 * 178.68287 * 5 4 2 37 37 H 1.08996 * 109.49729 * 58.58933 * 5 4 2 38 38 H 1.08998 * 109.59036 * 294.85539 * 6 5 4 39 39 H 1.08996 * 109.70542 * 174.49538 * 6 5 4 40 40 H 1.08994 * 110.52551 * 237.20349 * 12 10 8 41 41 H 1.09003 * 110.52190 * 359.94402 * 12 10 8 42 42 H 0.97003 * 125.55371 * 180.02562 * 16 14 13 43 43 H 1.09007 * 109.47350 * 301.87872 * 19 17 7 44 44 H 1.09000 * 109.47347 * 61.87966 * 19 17 7 45 45 H 1.09001 * 109.47238 * 305.10320 * 20 19 17 46 46 H 1.09001 * 109.47365 * 65.10315 * 20 19 17 47 47 H 1.09001 * 109.46923 * 300.00009 * 21 20 19 48 48 H 1.09001 * 109.47162 * 59.99689 * 21 20 19 49 49 H 0.97010 * 120.00326 * 0.02562 * 22 21 20 50 50 H 0.96997 * 120.00001 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7229 -1.2485 5 6 1.5030 -2.1556 -1.2663 6 6 2.0140 -2.9041 -0.0312 7 7 1.6515 -2.1383 1.1692 8 6 0.9740 -2.7221 2.1775 9 8 0.7658 -2.1092 3.2031 10 6 0.4752 -4.1365 2.0305 11 1 0.0434 -4.2905 1.0416 12 6 1.6148 -5.1417 2.2861 13 8 1.1582 -5.9069 3.4389 14 6 -0.0417 -5.4589 3.8249 15 8 -0.6520 -5.9249 4.7665 16 7 -0.5090 -4.4491 3.0781 17 6 2.0364 -0.7225 1.2470 18 1 3.1222 -0.6412 1.2973 19 6 1.4135 -0.0893 2.4928 20 6 1.7772 1.3959 2.5461 21 6 1.2629 2.0002 3.8542 22 7 1.6106 3.4224 3.9051 23 6 1.2512 4.1768 4.9899 24 1 0.7110 3.7234 5.8079 25 6 1.5803 5.5245 5.0378 26 7 2.2382 6.0772 4.0408 27 14 1.0906 6.5535 6.5181 28 1 1.7136 5.9883 7.7418 29 1 1.5565 7.9504 6.3259 30 1 -0.3873 6.5397 6.6634 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5150 0.8893 33 1 -0.3634 0.5127 -0.8906 34 1 3.1305 -0.7442 -1.2355 35 1 1.6985 -0.1955 -2.1389 36 1 1.8480 -2.6626 -2.1675 37 1 0.4133 -2.1353 -1.2544 38 1 3.0979 -3.0043 -0.0872 39 1 1.5575 -3.8928 0.0144 40 1 1.7494 -5.7941 1.4234 41 1 2.5418 -4.6174 2.5183 42 1 -1.3578 -3.9977 3.2074 43 1 0.3295 -0.1966 2.4515 44 1 1.7944 -0.5890 3.3835 45 1 2.8604 1.5067 2.4959 46 1 1.3197 1.9126 1.7025 47 1 0.1797 1.8894 3.9045 48 1 1.7204 1.4835 4.6979 49 1 2.0955 3.8298 3.1703 50 1 2.4684 7.0189 4.0745 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489064126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:08 Heat of formation + Delta-G solvation = -80.864010 kcal Electronic energy + Delta-G solvation = -31082.647808 eV Core-core repulsion = 26918.064590 eV Total energy + Delta-G solvation = -4164.583218 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.32956 -40.88833 -38.24841 -37.45866 -35.87135 -35.05586 -34.15823 -33.40233 -31.53829 -30.41882 -29.58633 -27.38905 -26.45717 -25.14453 -24.32928 -23.34297 -22.79538 -21.75093 -21.02032 -20.38996 -19.01872 -18.59411 -17.85447 -17.38389 -16.96687 -16.73673 -16.10043 -15.69737 -15.54453 -15.01919 -14.78112 -14.65296 -14.57967 -14.31816 -14.23078 -13.99667 -13.76458 -13.62494 -13.38672 -13.18623 -12.80950 -12.74540 -12.31067 -12.01414 -11.93964 -11.60015 -11.38180 -11.25993 -11.15805 -11.06276 -10.92444 -10.88946 -10.76585 -10.70112 -10.44599 -10.18560 -10.11866 -9.96122 -9.61480 -9.08868 -8.91039 -8.79572 -6.84254 -5.70558 -2.98199 1.97454 2.08602 2.33261 2.54114 3.07512 3.48789 3.48884 3.52245 3.54057 3.72590 4.01967 4.20241 4.39815 4.43217 4.48337 4.60231 4.64489 4.65641 4.77380 4.83134 4.92629 5.03333 5.23473 5.26634 5.38641 5.42291 5.46894 5.55169 5.60861 5.62857 5.75547 5.82812 5.85116 5.91396 6.08655 6.15201 6.22177 6.33733 6.40128 6.42907 6.46613 6.72294 6.78042 6.94794 7.02227 7.04689 7.66554 7.76109 7.76940 8.49370 9.59898 10.19641 10.54508 11.52706 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.002766 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.005764 B =10121.495917 C =12006.789128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 H 0.091 0.909 4 C -0.116 4.116 5 C -0.138 4.138 6 C 0.101 3.899 7 N -0.601 5.601 8 C 0.500 3.500 9 O -0.496 6.496 10 C 0.072 3.928 11 H 0.125 0.875 12 C 0.054 3.946 13 O -0.322 6.322 14 C 0.651 3.349 15 O -0.515 6.515 16 N -0.709 5.709 17 C 0.154 3.846 18 H 0.075 0.925 19 C -0.109 4.109 20 C -0.130 4.130 21 C 0.157 3.843 22 N -0.735 5.735 23 C -0.236 4.236 24 H 0.069 0.931 25 C -0.016 4.016 26 N -0.937 5.937 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.442 0.558 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.017 0.983 49 H 0.382 0.618 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 -25.105 -18.165 30.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 H 0.109 0.891 4 C -0.154 4.154 5 C -0.176 4.176 6 C -0.022 4.022 7 N -0.335 5.335 8 C 0.284 3.716 9 O -0.370 6.370 10 C -0.038 4.038 11 H 0.142 0.858 12 C -0.022 4.022 13 O -0.232 6.232 14 C 0.404 3.596 15 O -0.399 6.399 16 N -0.382 5.382 17 C 0.052 3.948 18 H 0.093 0.907 19 C -0.147 4.147 20 C -0.169 4.169 21 C 0.029 3.971 22 N -0.379 5.379 23 C -0.368 4.368 24 H 0.087 0.913 25 C -0.212 4.212 26 N -0.586 5.586 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.286 0.714 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.033 0.967 48 H 0.035 0.965 49 H 0.216 0.784 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.280 -25.255 -16.844 30.358 hybrid contribution -0.403 1.211 0.217 1.295 sum -0.684 -24.044 -16.626 29.241 Atomic orbital electron populations 1.21899 0.94769 1.01423 1.02368 1.21513 0.96898 1.00322 0.93797 0.89053 1.21570 1.00622 0.95027 0.98175 1.21969 1.01876 0.96647 0.97126 1.21871 1.00973 0.94623 0.84708 1.48160 1.55992 1.11772 1.17585 1.20476 0.79258 0.87750 0.84103 1.90897 1.55429 1.62695 1.27929 1.22417 0.91566 0.94748 0.95108 0.85788 1.24279 0.97107 0.92213 0.88574 1.87311 1.33155 1.56337 1.46440 1.18407 0.79971 0.79338 0.81920 1.91108 1.58366 1.62482 1.27957 1.45678 1.22645 1.37157 1.32723 1.21401 0.98979 0.77915 0.96493 0.90688 1.22131 1.01478 0.94585 0.96514 1.21881 1.00893 0.94779 0.99312 1.20574 0.96597 0.85973 0.93951 1.42384 1.68603 1.04194 1.22680 1.19232 1.29329 0.91135 0.97059 0.91296 1.24727 1.01373 0.96907 0.98184 1.69650 1.45176 1.12000 1.31774 0.86262 0.78083 0.79472 0.82378 1.21278 1.21704 1.21296 0.93047 0.91578 0.92849 0.91639 0.91413 0.90621 0.90917 0.90497 0.90210 0.86364 0.87154 0.71433 0.91018 0.89123 0.92392 0.92179 0.96651 0.96504 0.78446 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.14 37.16 0.30 -1.04 16 2 C -0.11 -0.91 2.24 -90.72 -0.20 -1.11 16 3 H 0.09 0.91 6.85 -51.93 -0.36 0.56 16 4 C -0.12 -0.68 5.43 -26.68 -0.14 -0.82 16 5 C -0.14 -0.51 5.74 -26.61 -0.15 -0.66 16 6 C 0.10 0.33 6.15 -3.71 -0.02 0.30 16 7 N -0.60 -4.21 2.42 -165.48 -0.40 -4.61 16 8 C 0.50 4.34 6.66 -10.99 -0.07 4.27 16 9 O -0.50 -6.66 12.12 5.56 0.07 -6.59 16 10 C 0.07 0.40 3.15 -68.19 -0.22 0.18 16 11 H 0.12 0.25 7.04 -51.93 -0.37 -0.12 16 12 C 0.05 0.25 7.08 37.73 0.27 0.52 16 13 O -0.32 -3.18 11.09 -37.83 -0.42 -3.60 16 14 C 0.65 7.70 9.16 53.71 0.49 8.20 16 15 O -0.52 -8.30 18.04 -19.11 -0.34 -8.65 16 16 N -0.71 -6.03 5.63 -59.36 -0.33 -6.36 16 17 C 0.15 1.48 2.72 -67.82 -0.18 1.29 16 18 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 19 C -0.11 -1.48 2.63 -26.73 -0.07 -1.55 16 20 C -0.13 -2.14 4.73 -26.73 -0.13 -2.26 16 21 C 0.16 3.39 6.26 -4.04 -0.03 3.37 16 22 N -0.73 -19.64 5.60 -59.91 -0.34 -19.97 16 23 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 24 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 25 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 26 N -0.94 -29.08 13.06 55.49 0.72 -28.35 16 27 Si 0.91 23.16 29.55 -169.99 -5.02 18.14 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 30 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 31 H 0.05 0.42 5.97 -51.93 -0.31 0.10 16 32 H 0.07 0.76 6.08 -51.93 -0.32 0.45 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.07 0.31 6.33 -51.93 -0.33 -0.02 16 38 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.08 0.04 5.28 -51.93 -0.27 -0.23 16 40 H 0.12 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.11 0.47 7.72 -51.93 -0.40 0.07 16 42 H 0.44 3.42 8.96 -40.82 -0.37 3.05 16 43 H 0.07 1.04 5.51 -51.92 -0.29 0.76 16 44 H 0.09 1.43 6.24 -51.93 -0.32 1.11 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.06 0.97 6.56 -51.93 -0.34 0.63 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.38 10.54 7.67 -40.82 -0.31 10.23 16 50 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 382.20 15.07 5.76 5.76 Total: -1.00 -38.12 382.20 -8.46 -46.58 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.75 Total: 4.66 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -0.40 Total: 2.98 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.35 Total: -59.29 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.70 Total: -18.83 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.12 -8.46 -46.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489064126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.281 kcal (2) G-P(sol) polarization free energy of solvation -38.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds