Wall clock time and date at job start Tue Mar 31 2020 23:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.52261 * 2 1 4 4 C 1.53046 * 109.49699 * 239.92737 * 2 1 3 5 5 C 1.53044 * 109.53516 * 301.41271 * 4 2 1 6 6 C 1.53187 * 109.31490 * 298.63268 * 5 4 2 7 7 N 1.46928 * 108.77238 * 54.63798 * 6 5 4 8 8 C 1.34778 * 120.63196 * 126.37057 * 7 6 5 9 9 O 1.21280 * 120.00400 * 174.61745 * 8 7 6 10 10 C 1.50697 * 119.99792 * 354.61682 * 8 7 6 11 11 H 1.09005 * 110.62181 * 317.18101 * 10 8 7 12 12 C 1.54089 * 110.56560 * 80.00010 * 10 8 7 13 13 O 1.45707 * 104.00975 * 118.57029 * 12 10 8 14 14 C 1.33772 * 109.47577 * 0.02562 * 13 12 10 15 15 O 1.21506 * 123.07226 * 179.97438 * 14 13 12 16 16 N 1.34007 * 113.85333 * 359.97438 * 14 13 12 17 17 C 1.46930 * 118.74063 * 306.64161 * 7 6 5 18 18 H 1.08996 * 109.58538 * 293.57445 * 17 7 6 19 19 C 1.52996 * 109.58735 * 173.14610 * 17 7 6 20 20 C 1.53002 * 109.47015 * 181.88186 * 19 17 7 21 21 C 1.53001 * 109.47105 * 185.10503 * 20 19 17 22 22 N 1.46497 * 109.47162 * 180.02562 * 21 20 19 23 23 C 1.36938 * 120.00220 * 180.02562 * 22 21 20 24 24 H 1.07999 * 119.99682 * 359.97438 * 23 22 21 25 25 C 1.38812 * 120.00013 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00326 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 119.99775 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47440 * 59.99426 * 27 25 23 29 29 H 1.48505 * 109.46940 * 179.97438 * 27 25 23 30 30 H 1.48507 * 109.46684 * 299.99163 * 27 25 23 31 31 H 1.09001 * 109.47208 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47015 * 300.07298 * 1 2 3 33 33 H 1.09001 * 109.47598 * 60.07507 * 1 2 3 34 34 H 1.08998 * 109.45919 * 181.39044 * 4 2 1 35 35 H 1.09000 * 109.44855 * 61.42657 * 4 2 1 36 36 H 1.09004 * 109.49699 * 178.68287 * 5 4 2 37 37 H 1.08996 * 109.49729 * 58.58933 * 5 4 2 38 38 H 1.08998 * 109.59036 * 294.85539 * 6 5 4 39 39 H 1.08996 * 109.70542 * 174.49538 * 6 5 4 40 40 H 1.08994 * 110.52551 * 237.20349 * 12 10 8 41 41 H 1.09003 * 110.52190 * 359.94402 * 12 10 8 42 42 H 0.97003 * 125.55371 * 180.02562 * 16 14 13 43 43 H 1.09007 * 109.47350 * 301.87872 * 19 17 7 44 44 H 1.09000 * 109.47347 * 61.87966 * 19 17 7 45 45 H 1.09001 * 109.47238 * 305.10320 * 20 19 17 46 46 H 1.09001 * 109.47365 * 65.10315 * 20 19 17 47 47 H 1.09001 * 109.46923 * 300.00009 * 21 20 19 48 48 H 1.09001 * 109.47162 * 59.99689 * 21 20 19 49 49 H 0.97010 * 120.00326 * 0.02562 * 22 21 20 50 50 H 0.96997 * 120.00001 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7229 -1.2485 5 6 1.5030 -2.1556 -1.2663 6 6 2.0140 -2.9041 -0.0312 7 7 1.6515 -2.1383 1.1692 8 6 0.9740 -2.7221 2.1775 9 8 0.7658 -2.1092 3.2031 10 6 0.4752 -4.1365 2.0305 11 1 0.0434 -4.2905 1.0416 12 6 1.6148 -5.1417 2.2861 13 8 1.1582 -5.9069 3.4389 14 6 -0.0417 -5.4589 3.8249 15 8 -0.6520 -5.9249 4.7665 16 7 -0.5090 -4.4491 3.0781 17 6 2.0364 -0.7225 1.2470 18 1 3.1222 -0.6412 1.2973 19 6 1.4135 -0.0893 2.4928 20 6 1.7772 1.3959 2.5461 21 6 1.2629 2.0002 3.8542 22 7 1.6106 3.4224 3.9051 23 6 1.2512 4.1768 4.9899 24 1 0.7110 3.7234 5.8079 25 6 1.5803 5.5245 5.0378 26 7 2.2382 6.0772 4.0408 27 14 1.0906 6.5535 6.5181 28 1 1.7136 5.9883 7.7418 29 1 1.5565 7.9504 6.3259 30 1 -0.3873 6.5397 6.6634 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5150 0.8893 33 1 -0.3634 0.5127 -0.8906 34 1 3.1305 -0.7442 -1.2355 35 1 1.6985 -0.1955 -2.1389 36 1 1.8480 -2.6626 -2.1675 37 1 0.4133 -2.1353 -1.2544 38 1 3.0979 -3.0043 -0.0872 39 1 1.5575 -3.8928 0.0144 40 1 1.7494 -5.7941 1.4234 41 1 2.5418 -4.6174 2.5183 42 1 -1.3578 -3.9977 3.2074 43 1 0.3295 -0.1966 2.4515 44 1 1.7944 -0.5890 3.3835 45 1 2.8604 1.5067 2.4959 46 1 1.3197 1.9126 1.7025 47 1 0.1797 1.8894 3.9045 48 1 1.7204 1.4835 4.6979 49 1 2.0955 3.8298 3.1703 50 1 2.4684 7.0189 4.0745 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489064126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:07 Heat of formation + Delta-G solvation = -110.341867 kcal Electronic energy + Delta-G solvation = -31083.926064 eV Core-core repulsion = 26918.064590 eV Total energy + Delta-G solvation = -4165.861473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.99836 -41.59681 -38.99691 -38.33291 -37.33172 -35.95882 -35.23882 -34.40113 -33.13282 -31.03985 -30.94560 -28.35693 -27.25755 -26.26251 -25.00137 -24.70643 -23.56202 -23.10236 -21.94705 -21.34934 -19.61438 -19.28549 -19.15277 -18.44246 -18.08198 -17.48149 -16.93003 -16.69942 -16.50657 -16.25506 -15.76904 -15.46102 -15.30372 -15.28068 -15.22359 -15.11674 -14.82873 -14.68005 -14.46440 -14.11775 -13.68252 -13.48419 -13.31390 -13.16089 -12.94010 -12.76782 -12.72870 -12.43769 -12.26773 -12.10302 -12.04352 -11.98545 -11.93716 -11.83053 -11.69512 -11.57789 -11.29298 -11.14899 -10.96619 -10.93933 -9.89334 -9.55298 -9.06400 -8.00171 -5.29938 1.29741 1.42019 1.43099 1.47081 1.53436 1.62397 1.88493 2.51892 2.54915 3.05236 3.20670 3.32369 3.66009 3.72197 3.82103 3.92903 3.98433 4.02254 4.14200 4.19308 4.24826 4.30129 4.38666 4.43664 4.54622 4.59893 4.66778 4.69605 4.73214 4.82750 4.88087 4.93249 5.00496 5.05642 5.10434 5.20298 5.27240 5.29143 5.36865 5.42232 5.45025 5.50261 5.58289 5.63224 5.74620 6.07492 6.22571 6.38931 6.87782 7.10856 7.28249 8.02836 8.29104 9.23216 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.002766 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.005764 B =10121.495917 C =12006.789128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.070 0.930 4 C -0.114 4.114 5 C -0.134 4.134 6 C 0.092 3.908 7 N -0.592 5.592 8 C 0.494 3.506 9 O -0.555 6.555 10 C 0.079 3.921 11 H 0.177 0.823 12 C 0.049 3.951 13 O -0.338 6.338 14 C 0.648 3.352 15 O -0.574 6.574 16 N -0.703 5.703 17 C 0.160 3.840 18 H 0.079 0.921 19 C -0.091 4.091 20 C -0.114 4.114 21 C 0.156 3.844 22 N -0.746 5.746 23 C -0.256 4.256 24 H 0.069 0.931 25 C -0.072 4.072 26 N -0.968 5.968 27 Si 0.977 3.023 28 H -0.278 1.278 29 H -0.288 1.288 30 H -0.278 1.278 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.174 0.826 41 H 0.114 0.886 42 H 0.443 0.557 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.007 0.993 48 H 0.006 0.994 49 H 0.375 0.625 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 -27.060 -20.859 34.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.172 4.172 6 C -0.028 4.028 7 N -0.325 5.325 8 C 0.280 3.720 9 O -0.433 6.433 10 C -0.030 4.030 11 H 0.194 0.806 12 C -0.025 4.025 13 O -0.248 6.248 14 C 0.401 3.599 15 O -0.462 6.462 16 N -0.374 5.374 17 C 0.056 3.944 18 H 0.097 0.903 19 C -0.129 4.129 20 C -0.153 4.153 21 C 0.030 3.970 22 N -0.389 5.389 23 C -0.388 4.388 24 H 0.087 0.913 25 C -0.265 4.265 26 N -0.618 5.618 27 Si 0.804 3.196 28 H -0.205 1.205 29 H -0.214 1.214 30 H -0.204 1.204 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.137 0.863 40 H 0.192 0.808 41 H 0.133 0.867 42 H 0.287 0.713 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.025 0.975 48 H 0.024 0.976 49 H 0.207 0.793 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.307 -27.240 -19.614 33.568 hybrid contribution -0.525 1.849 0.983 2.158 sum -0.217 -25.391 -18.631 31.494 Atomic orbital electron populations 1.21853 0.95263 1.01954 1.00974 1.21462 0.96384 0.99610 0.94910 0.91166 1.21558 1.01015 0.96409 0.96165 1.21978 1.01715 0.95074 0.98430 1.22308 1.02601 0.95571 0.82360 1.48189 1.54975 1.10687 1.18631 1.21087 0.78608 0.88854 0.83419 1.90890 1.57664 1.64474 1.30263 1.22741 0.91441 0.92488 0.96320 0.80648 1.24854 0.96382 0.92587 0.88679 1.87271 1.32065 1.57064 1.48408 1.18565 0.80247 0.79564 0.81489 1.91049 1.60179 1.64475 1.30479 1.45714 1.22988 1.35942 1.32791 1.21129 0.98728 0.79767 0.94732 0.90348 1.21874 1.00839 0.92210 0.98025 1.21735 1.00494 0.96765 0.96283 1.20699 0.96031 0.83838 0.96463 1.42575 1.68510 1.05881 1.21886 1.19604 1.29386 0.91971 0.97821 0.91346 1.25600 1.01596 0.98010 1.01257 1.69802 1.46182 1.12170 1.33638 0.85178 0.78021 0.77504 0.78857 1.20451 1.21397 1.20357 0.91533 0.94843 0.92319 0.91023 0.91284 0.87880 0.91105 0.88724 0.86333 0.80821 0.86740 0.71326 0.92276 0.91444 0.92381 0.91966 0.97496 0.97610 0.79286 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.14 71.98 0.59 -1.92 16 2 C -0.10 -1.67 2.24 -10.86 -0.02 -1.69 16 3 H 0.07 1.41 6.85 -2.39 -0.02 1.40 16 4 C -0.11 -0.97 5.43 30.62 0.17 -0.81 16 5 C -0.13 -0.32 5.74 30.67 0.18 -0.14 16 6 C 0.09 0.10 6.15 86.36 0.53 0.63 16 7 N -0.59 -6.64 2.42 -795.85 -1.92 -8.57 16 8 C 0.49 7.65 6.66 87.66 0.58 8.24 16 9 O -0.56 -15.22 12.12 -3.03 -0.04 -15.25 16 10 C 0.08 0.60 3.15 44.50 0.14 0.74 16 11 H 0.18 -0.41 7.04 -2.38 -0.02 -0.43 16 12 C 0.05 0.25 7.08 72.35 0.51 0.76 16 13 O -0.34 -6.11 11.09 -47.32 -0.52 -6.63 16 14 C 0.65 15.20 9.16 129.91 1.19 16.39 16 15 O -0.57 -19.29 18.04 19.67 0.35 -18.93 16 16 N -0.70 -11.14 5.63 -573.43 -3.23 -14.36 16 17 C 0.16 2.91 2.72 44.83 0.12 3.03 16 18 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 19 C -0.09 -2.58 2.63 30.59 0.08 -2.50 16 20 C -0.11 -3.94 4.73 30.60 0.14 -3.80 16 21 C 0.16 7.14 6.26 86.38 0.54 7.68 16 22 N -0.75 -41.38 5.60 -343.45 -1.92 -43.30 16 23 C -0.26 -15.46 9.99 84.03 0.84 -14.62 16 24 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 25 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 26 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 27 Si 0.98 48.05 29.55 68.60 2.03 50.08 16 28 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 29 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 30 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 31 H 0.07 0.94 5.97 -2.39 -0.01 0.92 16 32 H 0.03 0.80 6.08 -2.39 -0.01 0.78 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.10 -0.19 8.14 -2.38 -0.02 -0.21 16 37 H 0.07 0.25 6.33 -2.39 -0.02 0.23 16 38 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.12 -0.76 5.28 -2.39 -0.01 -0.77 16 40 H 0.17 -0.99 8.14 -2.39 -0.02 -1.01 16 41 H 0.11 0.54 7.72 -2.39 -0.02 0.52 16 42 H 0.44 6.74 8.96 -92.71 -0.83 5.91 16 43 H 0.06 1.82 5.51 -2.38 -0.01 1.81 16 44 H 0.07 2.26 6.24 -2.39 -0.01 2.24 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.06 2.11 6.56 -2.39 -0.02 2.10 16 47 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 49 H 0.38 21.49 7.67 -92.70 -0.71 20.78 16 50 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -89.68 382.20 0.52 -89.16 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -0.56 Total: 20.44 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 6.06 Total: 8.09 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -6.79 Total: -126.96 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -0.21 Total: -40.82 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -89.68 0.52 -89.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489064126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.180 kcal (2) G-P(sol) polarization free energy of solvation -89.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds