Wall clock time and date at job start Tue Mar 31 2020 23:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.78182 * 2 1 4 4 C 1.54326 * 110.71955 * 123.23859 * 2 1 3 5 5 N 1.47022 * 107.39867 * 96.24681 * 4 2 1 6 6 C 1.34780 * 125.64458 * 178.82715 * 5 4 2 7 7 O 1.21282 * 120.00014 * 354.96253 * 6 5 4 8 8 C 1.50698 * 119.99894 * 174.96027 * 6 5 4 9 9 C 1.53179 * 109.54208 * 266.80898 * 8 6 5 10 10 C 1.53089 * 109.16319 * 183.15094 * 9 8 6 11 11 O 1.42904 * 109.41423 * 57.61446 * 10 9 8 12 12 C 1.42903 * 114.09431 * 298.83880 * 11 10 9 13 13 C 1.53088 * 109.41573 * 61.16137 * 12 11 10 14 14 C 1.47424 * 108.70875 * 358.86479 * 5 4 2 15 15 C 1.54912 * 104.82647 * 24.12592 * 14 5 4 16 16 H 1.09005 * 111.00079 * 81.06883 * 15 14 5 17 17 N 1.46898 * 111.00022 * 204.91347 * 15 14 5 18 18 C 1.46898 * 111.00399 * 273.55138 * 17 15 14 19 19 C 1.50701 * 109.47373 * 180.02562 * 18 17 15 20 20 O 1.21291 * 119.99699 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00095 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99802 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00379 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99859 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00022 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99689 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47214 * 60.00265 * 26 24 22 28 28 H 1.48507 * 109.46661 * 179.97438 * 26 24 22 29 29 H 1.48490 * 109.47291 * 299.99801 * 26 24 22 30 30 H 1.08996 * 109.47131 * 298.21697 * 1 2 3 31 31 H 1.09004 * 109.46994 * 58.21718 * 1 2 3 32 32 H 1.08994 * 109.47334 * 178.21097 * 1 2 3 33 33 H 1.08997 * 109.88102 * 336.75716 * 4 2 1 34 34 H 1.08999 * 109.88291 * 215.73868 * 4 2 1 35 35 H 1.08995 * 109.54646 * 27.07248 * 8 6 5 36 36 H 1.09003 * 109.52336 * 303.06074 * 9 8 6 37 37 H 1.08999 * 109.52435 * 63.24785 * 9 8 6 38 38 H 1.08993 * 109.48296 * 297.62768 * 10 9 8 39 39 H 1.09002 * 109.49331 * 177.59622 * 10 9 8 40 40 H 1.09004 * 109.48002 * 301.17607 * 12 11 10 41 41 H 1.08999 * 109.49060 * 181.14773 * 12 11 10 42 42 H 1.09005 * 109.52365 * 182.48550 * 13 12 11 43 43 H 1.08993 * 109.57969 * 62.32468 * 13 12 11 44 44 H 1.09000 * 110.36461 * 142.96322 * 14 5 4 45 45 H 1.08999 * 110.36381 * 265.29164 * 14 5 4 46 46 H 1.00902 * 111.00145 * 37.50975 * 17 15 14 47 47 H 1.09004 * 109.47162 * 300.00059 * 18 17 15 48 48 H 1.08995 * 109.47163 * 60.00140 * 18 17 15 49 49 H 0.97001 * 120.00199 * 0.02562 * 21 19 18 50 50 H 0.96996 * 120.00391 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7912 1.2073 5 7 2.3743 -2.1534 0.7416 6 6 2.8909 -3.1452 1.4940 7 8 3.2348 -2.9240 2.6358 8 6 3.0411 -4.5290 0.9165 9 6 1.8007 -5.3623 1.2534 10 6 1.9961 -6.7881 0.7313 11 8 3.1779 -7.3473 1.3081 12 6 4.3758 -6.6369 0.9879 13 6 4.2760 -5.2050 1.5202 14 6 2.0157 -2.2547 -0.6848 15 6 2.0791 -0.8001 -1.2137 16 1 3.1058 -0.5104 -1.4379 17 7 1.2173 -0.6300 -2.3911 18 6 1.9310 -0.9925 -3.6228 19 6 1.0173 -0.8050 -4.8065 20 8 -0.1167 -0.4080 -4.6404 21 7 1.4606 -1.0776 -6.0498 22 6 0.6292 -0.9075 -7.1266 23 1 -0.3808 -0.5548 -6.9786 24 6 1.0860 -1.1890 -8.4083 25 7 2.3147 -1.6188 -8.5883 26 14 -0.0466 -0.9566 -9.8755 27 1 -0.4740 0.4636 -9.9508 28 1 0.6751 -1.3226 -11.1207 29 1 -1.2409 -1.8255 -9.7214 30 1 -0.3633 0.4859 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3634 -1.0271 -0.0321 33 1 1.3262 -0.8255 1.9977 34 1 2.9853 -0.3191 1.5793 35 1 3.1542 -4.4623 -0.1655 36 1 1.6603 -5.3860 2.3341 37 1 0.9244 -4.9184 0.7810 38 1 2.0959 -6.7674 -0.3538 39 1 1.1347 -7.3971 1.0056 40 1 4.5068 -6.6142 -0.0940 41 1 5.2288 -7.1367 1.4469 42 1 5.1700 -4.6485 1.2386 43 1 4.1861 -5.2245 2.6063 44 1 2.7338 -2.8821 -1.2128 45 1 1.0078 -2.6548 -0.7950 46 1 0.3660 -1.1632 -2.2961 47 1 2.8074 -0.3544 -3.7362 48 1 2.2451 -2.0348 -3.5674 49 1 2.3676 -1.3948 -6.1827 50 1 2.6336 -1.8156 -9.4830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502698976.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:46 Heat of formation + Delta-G solvation = -121.646721 kcal Electronic energy + Delta-G solvation = -30189.605256 eV Core-core repulsion = 26023.253567 eV Total energy + Delta-G solvation = -4166.351689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.87471 -39.48641 -38.45282 -37.84306 -34.75269 -34.10710 -33.83485 -32.40705 -31.48976 -31.27806 -28.90456 -27.49083 -26.24718 -25.63106 -24.16368 -23.94252 -22.88530 -21.08602 -19.85202 -19.37539 -19.34036 -18.00860 -17.61950 -16.82731 -16.46703 -16.23016 -16.13340 -15.58335 -15.22517 -15.00669 -14.64094 -14.59209 -14.50562 -14.13275 -13.90776 -13.78297 -13.63107 -13.20944 -13.04483 -12.85523 -12.82724 -12.62804 -12.30510 -12.24787 -11.89821 -11.71791 -11.65829 -11.57595 -11.18975 -11.12272 -11.07501 -10.95508 -10.84511 -10.80363 -10.48927 -10.27317 -10.23956 -9.73446 -9.56196 -8.93326 -8.56668 -8.20156 -8.03037 -6.47774 -3.88872 2.34194 2.64948 3.15713 3.22227 3.26218 3.51967 3.81960 3.89717 4.09259 4.20154 4.28400 4.32503 4.40571 4.48928 4.59319 4.73705 4.80658 4.85761 4.93849 5.02018 5.06780 5.06926 5.15497 5.17765 5.20790 5.25908 5.31446 5.39821 5.44807 5.48618 5.55666 5.61576 5.67018 5.69032 5.72959 5.79471 5.86035 5.89039 6.02961 6.12381 6.17307 6.33628 6.82160 7.03607 7.22208 7.46627 7.49325 7.90039 7.99246 8.53969 9.11420 9.47026 9.97913 10.69731 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011748 B = 0.002489 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.778132 B =11245.277837 C =12899.122504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.094 0.906 4 C 0.109 3.891 5 N -0.612 5.612 6 C 0.535 3.465 7 O -0.540 6.540 8 C -0.106 4.106 9 C -0.142 4.142 10 C 0.063 3.937 11 O -0.382 6.382 12 C 0.061 3.939 13 C -0.140 4.140 14 C 0.066 3.934 15 C 0.082 3.918 16 H 0.096 0.904 17 N -0.648 5.648 18 C 0.048 3.952 19 C 0.439 3.561 20 O -0.583 6.583 21 N -0.562 5.562 22 C -0.301 4.301 23 H 0.103 0.897 24 C 0.024 3.976 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.353 0.647 47 H 0.088 0.912 48 H 0.044 0.956 49 H 0.392 0.608 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.045 -6.559 18.243 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.113 0.887 4 C -0.014 4.014 5 N -0.347 5.347 6 C 0.323 3.677 7 O -0.417 6.417 8 C -0.128 4.128 9 C -0.180 4.180 10 C -0.014 4.014 11 O -0.300 6.300 12 C -0.015 4.015 13 C -0.178 4.178 14 C -0.060 4.060 15 C -0.030 4.030 16 H 0.114 0.886 17 N -0.280 5.280 18 C -0.085 4.085 19 C 0.224 3.776 20 O -0.468 6.468 21 N -0.198 5.198 22 C -0.431 4.431 23 H 0.121 0.879 24 C -0.178 4.178 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.175 0.825 47 H 0.106 0.894 48 H 0.062 0.938 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.714 -5.769 18.857 20.066 hybrid contribution 0.145 -0.729 -1.120 1.344 sum 3.859 -6.497 17.737 19.279 Atomic orbital electron populations 1.21715 0.93520 1.01945 1.02685 1.22263 0.97248 0.99347 0.92200 0.88745 1.22123 1.00420 0.81597 0.97217 1.48418 1.63058 1.11860 1.11331 1.20240 0.76474 0.85531 0.85419 1.90695 1.49467 1.83220 1.18292 1.21355 0.97830 0.92013 1.01581 1.22116 0.96626 0.95987 1.03319 1.22580 0.88398 0.93167 0.97238 1.87950 1.14996 1.52823 1.74268 1.22611 0.87831 0.91543 0.99550 1.22095 0.96739 0.96187 1.02782 1.23313 1.00940 1.00464 0.81259 1.22872 0.98054 0.91404 0.90709 0.88627 1.60131 1.06784 1.61811 0.99268 1.21755 0.97431 0.99201 0.90101 1.19746 0.88788 0.85034 0.83989 1.90531 1.20130 1.50953 1.85146 1.41853 1.15074 1.58099 1.04783 1.19653 0.97175 1.42030 0.84210 0.87937 1.25263 0.96579 0.96955 0.99023 1.69593 1.15797 1.45052 1.23789 0.85920 0.79567 0.79039 0.79727 1.19842 1.20953 1.19881 0.92886 0.90144 0.93187 0.91278 0.91359 0.89059 0.90165 0.90327 0.92686 0.88307 0.92886 0.88376 0.90527 0.89576 0.90521 0.90932 0.82546 0.89387 0.93782 0.77465 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.11 37.16 0.30 -1.10 16 2 C -0.09 -0.87 3.58 -88.65 -0.32 -1.19 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 4 C 0.11 1.09 6.44 -3.06 -0.02 1.07 16 5 N -0.61 -6.41 3.33 -170.52 -0.57 -6.98 16 6 C 0.53 6.28 6.87 -10.98 -0.08 6.20 16 7 O -0.54 -8.19 16.51 5.56 0.09 -8.10 16 8 C -0.11 -0.97 2.29 -91.59 -0.21 -1.18 16 9 C -0.14 -1.20 5.40 -26.59 -0.14 -1.34 16 10 C 0.06 0.49 6.84 37.20 0.25 0.75 16 11 O -0.38 -3.72 10.77 -35.23 -0.38 -4.10 16 12 C 0.06 0.48 6.84 37.20 0.25 0.74 16 13 C -0.14 -1.24 5.11 -26.59 -0.14 -1.38 16 14 C 0.07 0.61 5.84 -2.53 -0.01 0.60 16 15 C 0.08 0.85 3.12 -65.43 -0.20 0.65 16 16 H 0.10 0.98 7.92 -51.93 -0.41 0.56 16 17 N -0.65 -8.86 5.07 -105.59 -0.53 -9.40 16 18 C 0.05 0.74 6.04 -4.98 -0.03 0.71 16 19 C 0.44 9.65 7.82 -10.99 -0.09 9.56 16 20 O -0.58 -14.93 15.78 5.55 0.09 -14.84 16 21 N -0.56 -13.53 5.29 -10.96 -0.06 -13.58 16 22 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 23 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -23.79 13.05 55.50 0.72 -23.06 16 26 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 27 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.95 7.64 -51.93 -0.40 0.55 16 32 H 0.05 0.49 7.46 -51.93 -0.39 0.11 16 33 H 0.07 0.71 7.84 -51.93 -0.41 0.30 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.73 6.42 -51.93 -0.33 0.40 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.91 7.75 -51.93 -0.40 0.50 16 44 H 0.08 0.65 6.86 -51.93 -0.36 0.30 16 45 H 0.07 0.67 7.39 -51.93 -0.38 0.29 16 46 H 0.35 5.02 7.35 -39.29 -0.29 4.73 16 47 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 48 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.39 9.01 7.90 -40.82 -0.32 8.68 16 50 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 397.80 15.07 5.99 5.99 Total: -1.00 -32.21 397.80 -8.60 -40.82 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -8.27 Total: 11.44 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.67 Total: 6.35 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.44 Total: -53.02 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.20 Total: -27.04 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.21 -8.60 -40.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502698976.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.830 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds